BAC Information

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BAC

Clone NameB6Ng01-136B23
Chromosome1 (Build37)
Map Location 120,404,009 - 120,523,063
singlet/doubletdoublet
Overlap geneClasp1
Upstream geneB020011L13Rik, LOC100041684, LOC636972, EG666785, EG634762, LOC100042368, LOC637083, Tsn, Mki67ip
Downstream geneTcfcp2l1, LOC100041753, Gli2, LOC666838, LOC100041778, Inhbb, Ralb, Tmem185b, Epb4.1l5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136B23.bB6Ng01-136B23.g
ACCDH935982DH935983
length1,125805
definitionDH935982|Mus musculus domesticus DNA, BAC clone: B6Ng01-136B23, 5' end.DH935983|Mus musculus domesticus DNA, BAC clone: B6Ng01-136B23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,404,009 - 120,405,139)(120,522,257 - 120,523,063)
sequence
gaattcagttcctccctggagatcatttgccaggagactttataggaagt
ttgatgttaagacctactaacttgaagcttggggtgtagcttagtagaag
agagtctgtctagcatgtaagggccttcatttggtcccctgaaccattaa
aaaaaaaaaaaccagttaaaaacaagtaatggtgctgataatgtagccca
gtggtagaatacttgctcatgtccgaggccctgggtccatcccctgctca
gcagctacacagatggaaaagacaatgacttcctcttttgctcctgtagt
ctcttctgtgcagtcacagctgaccagctcttcaagttgacacaggttac
aaactgcttttttaaacttagcactctagtttacttaggtgaaaattaat
tcctggcatttgtttaactgtatgtgtgcccacatgttctcatgttagga
cagtgtgtgtaccaaagcttatctgtggaggtcagagggctcctaccatg
tggatcccagggtttgaactcagatcttcaggcttggcagcaagcgcctt
tacccattgagctatcttctggccttgtttttcttacttctgagctcctc
gtaactctgctcccatcttgggtagttcctacttggtagagttaaataat
gtctagttgctgcaggccgctcagggtcagagtgtcagtggtcctcccct
gctgctgtttccttgtattgtgttctcgtcctctaatcatgatgcaatac
agatttcaagaagctctgagaattttccacttttgttttgtattcttaag
tcggtttcaggtatttcaaactgaggaatgtctagctgcattgataaaag
ttgccactgacgagtccgttctgtactctggggtgtgggttgtggtagct
tgggcctctgtcttcccaagttttcccttggccttgtaagttagaacctt
taaattccggttttatacatgaggccggggtactgagaagttacgtaact
ttcttcagcatccaacagctggtgaggagcaggagggtcagcagtaaagc
aaggtgcctccagcgcgactcagtagcgggacctggggacgctgcgtgaa
ggagagaaccaaccccacagctgac
gaattctgtaaccaacatcctgagcactaagttctccatcagggaccaga
acggggacatgctttcaaaaggagagcaccctaggataatgtcaagaagc
cagcccttccagaggctcctatcattctagccaggcaagtggacaagcag
aagatgacagagggaagtgttactattatgggaaccatgtgtgtgtggtg
gtgagaccaagactgcctttgaaactctccaggtgtgggtggcagtgaag
ctaaagcctagcagaggtgaatgtgggaatgccctcagacacacatcaag
tgctaaggcttgcagaaagggaatccacaaacacaagcacgctccagggg
ctctgccttcactgctgagctgtcagctgtgacctgagtgggggttaatt
gagcccagggtgtttgtaccaagtgtctgtattggtcctcaccccttccc
ttccaagtgggcttgtcacaggcataatgctagacaagaatcagtcagat
tcatagggtaccacgaagactcccactttgtccaagccctaaaataaatc
tgttggagaggaactgctttctggcatcccatcccctcagggctccagca
aagacaaacttcagtggaaactccttccaagctgaggatcccggccctaa
gaacctaaaactaggaataaaaagatttactttctgggtttgttaagagc
tttcggggaagaggaaagtggattcttttgtccagtgtgtggcgggtgac
cacaaacttttttcggatggcaagggcgtcttttgattcctgctggggag
gataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_120404009_120405139
seq2: B6Ng01-136B23.b_47_1171

seq1  GAATTCAGTTCCTCCCTGGAGATCATTTGCCAGGAGACTTTATAGGAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCCTCCCTGGAGATCATTTGCCAGGAGACTTTATAGGAAGT  50

seq1  TTGATGTTAAGACCTACTAACTTGAAGCTTGGGGTGTAGCTTAGTAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTTAAGACCTACTAACTTGAAGCTTGGGGTGTAGCTTAGTAGAAG  100

seq1  AGAGTCTGTCTAGCATGTAAGGGCCTTCATTTGGTCCCCTGAACCATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTGTCTAGCATGTAAGGGCCTTCATTTGGTCCCCTGAACCATTAA  150

seq1  AAAAAAAAAAACCAGTTAAAAACAAGTAATGGTGCTGATAATGTAGCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAACCAGTTAAAAACAAGTAATGGTGCTGATAATGTAGCCCA  200

seq1  GTGGTAGAATACTTGCTCATGTCCGAGGCCCTGGGTCCATCCCCTGCTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGAATACTTGCTCATGTCCGAGGCCCTGGGTCCATCCCCTGCTCA  250

seq1  GCAGCTACACAGATGGAAAAGACAATGACTTCCTCTTTTGCTCCTGTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTACACAGATGGAAAAGACAATGACTTCCTCTTTTGCTCCTGTAGT  300

seq1  CTCTTCTGTGCAGTCACAGCTGACCAGCTCTTCAAGTTGACACAGGTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCTGTGCAGTCACAGCTGACCAGCTCTTCAAGTTGACACAGGTTAC  350

seq1  AAACTGCTTTTTTAAACTTAGCACTCTAGTTTACTTAGGTGAAAATTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCTTTTTTAAACTTAGCACTCTAGTTTACTTAGGTGAAAATTAAT  400

seq1  TCCTGGCATTTGTTTAACTGTATGTGTGCCCACATGTTCTCATGTTAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCATTTGTTTAACTGTATGTGTGCCCACATGTTCTCATGTTAGGA  450

seq1  CAGTGTGTGTACCAAAGCTTATCTGTGGAGGTCAGAGGGCTCCTACCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGTGTACCAAAGCTTATCTGTGGAGGTCAGAGGGCTCCTACCATG  500

seq1  TGGATCCCAGGGTTTGAACTCAGATCTTCAGGCTTGGCAGCAAGCGCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCCAGGGTTTGAACTCAGATCTTCAGGCTTGGCAGCAAGCGCCTT  550

seq1  TACCCATTGAGCTATCTTCTGGCCTTGTTTTTCTTACTTCTGAGCTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATTGAGCTATCTTCTGGCCTTGTTTTTCTTACTTCTGAGCTCCTC  600

seq1  GTAACTCTGCTCCCATCTTGGGTAGTTCCTACTTGGTAGAGTTAAATAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCTGCTCCCATCTTGGGTAGTTCCTACTTGGTAGAGTTAAATAAT  650

seq1  GTCTAGTTGCTGCAGGCCGCTCAGGGTCAGAGTGTCAGTGGTCCTCCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGTTGCTGCAGGCCGCTCAGGGTCAGAGTGTCAGTGGTCCTCCCCT  700

seq1  GCTGCTGTTTCCTTGTATTGTGTTCTCGTCCTCTAATCATGATGCAATAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGTTTCCTTGTATTGTGTTCTCGTCCTCTAATCATGATGCAATAC  750

seq1  AGATTTCAAGAAGCTCTGAGAATTTTCCACTTTTGTTTTGTATTCTTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCAAGAAGCTCTGAGAATTTTCCACTTTTGTTTTGTATTCTTAAG  800

seq1  TCGGTTTCAGGTATTTCAAACTGAGGAATGTCTAGCTGCATTGATAAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTTTCAGGTATTTCAAACTGAGGAATGTCTAGCTGCATTGATAAAAG  850

seq1  TTGCCACTGACGAGTCCGTTCTGTACTCT-GGGTGT-GGTTGTGGTAGCT  898
      ||||||||||||||||||||||||||||| |||||| |||||||||||||
seq2  TTGCCACTGACGAGTCCGTTCTGTACTCTGGGGTGTGGGTTGTGGTAGCT  900

seq1  T-GGCCTCTGTCTTCCCCAAGTTTCCC-TGGCCTTGTAAGTTAGAACCTT  946
      | ||||||||||||||| |  |||||| ||||||||||||||||||||||
seq2  TGGGCCTCTGTCTTCCCAAGTTTTCCCTTGGCCTTGTAAGTTAGAACCTT  950

seq1  TAAATTCCCGTTTTATACATGAGGCCGGGGTACTGAGAAGTTACGTAAC-  995
      |||||||| |||||||||||||||||||||||||||||||||||||||| 
seq2  TAAATTCCGGTTTTATACATGAGGCCGGGGTACTGAGAAGTTACGTAACT  1000

seq1  TTCTCCAGCATCCAACAGCTGGTGAGGAGCAGGAAGGGTCAGCCAGTAAA  1045
      |||| |||||||||||||||||||||||||||| |||||||| |||| ||
seq2  TTCTTCAGCATCCAACAGCTGGTGAGGAGCAGG-AGGGTCAG-CAGT-AA  1047

seq1  AGCAA-GTGCCTCCCAGCCGCCGACTCAGTTAGCGGGACCCTGGGACCGC  1094
      ||||| |||||| |||||   |||||||| |||||||| ||||||  |||
seq2  AGCAAGGTGCCT-CCAGC--GCGACTCAG-TAGCGGGA-CCTGGGGACGC  1092

seq1  TGCAGTGGAAGGAGAGAACCAACCCCCACAGGCTGAC  1131
      ||| || ||||||||||||||| ||||||| ||||||
seq2  TGC-GT-GAAGGAGAGAACCAA-CCCCACA-GCTGAC  1125

seq1: chr1_120522257_120523063
seq2: B6Ng01-136B23.g_69_873 (reverse)

seq1  TTATCCT-CCCAGCAGGAATCAAAAGGCTGCCCTTGCCCTCCGGAGAGAG  49
      ||||||| |||||||||||||||||| | ||||||||| |||| | | ||
seq2  TTATCCTCCCCAGCAGGAATCAAAAGAC-GCCCTTGCCATCCGAAAAAAG  49

seq1  TTTTGTGGTCACCCGCCACACACTTGGACAAAAGAATCCACTTTCCTCTT  99
       |||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  -TTTGTGGTCACCCGCCACACAC-TGGACAAAAGAATCCACTTTCCTCTT  97

seq1  CCCCGAAAGCTCTTAACAAACCCAGAAAGTAAATCTTTTTATTCCTAGTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGAAAGCTCTTAACAAACCCAGAAAGTAAATCTTTTTATTCCTAGTT  147

seq1  TTAGGTTCTTAGGGCCGGGATCCTCAGCTTGGAAGGAGTTTCCACTGAAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTCTTAGGGCCGGGATCCTCAGCTTGGAAGGAGTTTCCACTGAAG  197

seq1  TTTGTCTTTGCTGGAGCCCTGAGGGGATGGGATGCCAGAAAGCAGTTCCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTTGCTGGAGCCCTGAGGGGATGGGATGCCAGAAAGCAGTTCCT  247

seq1  CTCCAACAGATTTATTTTAGGGCTTGGACAAAGTGGGAGTCTTCGTGGTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACAGATTTATTTTAGGGCTTGGACAAAGTGGGAGTCTTCGTGGTA  297

seq1  CCCTATGAATCTGACTGATTCTTGTCTAGCATTATGCCTGTGACAAGCCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATGAATCTGACTGATTCTTGTCTAGCATTATGCCTGTGACAAGCCC  347

seq1  ACTTGGAAGGGAAGGGGTGAGGACCAATACAGACACTTGGTACAAACACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAAGGGAAGGGGTGAGGACCAATACAGACACTTGGTACAAACACC  397

seq1  CTGGGCTCAATTAACCCCCACTCAGGTCACAGCTGACAGCTCAGCAGTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTCAATTAACCCCCACTCAGGTCACAGCTGACAGCTCAGCAGTGA  447

seq1  AGGCAGAGCCCCTGGAGCGTGCTTGTGTTTGTGGATTCCCTTTCTGCAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGCCCCTGGAGCGTGCTTGTGTTTGTGGATTCCCTTTCTGCAAG  497

seq1  CCTTAGCACTTGATGTGTGTCTGAGGGCATTCCCACATTCACCTCTGCTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGCACTTGATGTGTGTCTGAGGGCATTCCCACATTCACCTCTGCTA  547

seq1  GGCTTTAGCTTCACTGCCACCCACACCTGGAGAGTTTCAAAGGCAGTCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTAGCTTCACTGCCACCCACACCTGGAGAGTTTCAAAGGCAGTCTT  597

seq1  GGTCTCACCACCACACACACATGGTTCCCATAATAGTAACACTTCCCTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCACCACCACACACACATGGTTCCCATAATAGTAACACTTCCCTCT  647

seq1  GTCATCTTCTGCTTGTCCACTTGCCTGGCTAGAATGATAGGAGCCTCTGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTTCTGCTTGTCCACTTGCCTGGCTAGAATGATAGGAGCCTCTGG  697

seq1  AAGGGCTGGCTTCTTGACATTATCCTAGGGTGCTCTCCTTTTGAAAGCAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCTGGCTTCTTGACATTATCCTAGGGTGCTCTCCTTTTGAAAGCAT  747

seq1  GTCCCCGTTCTGGTCCCTGATGGAGAACTTAGTGCTCAGGATGTTGGTTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCGTTCTGGTCCCTGATGGAGAACTTAGTGCTCAGGATGTTGGTTA  797

seq1  CAGAATTC  807
      ||||||||
seq2  CAGAATTC  805