BAC Information

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BAC

Clone NameB6Ng01-136H12
Chromosome1 (Build37)
Map Location 46,271,296 - 46,394,801
singlet/doubletdoublet
Overlap geneDnahc7b
Upstream geneCol3a1, Col5a2, EG666799, LOC631429, LOC666814, EG666819, Wdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225
Downstream geneLOC666855, Slc39a10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136H12.bB6Ng01-136H12.g
ACCDH936234DH936235
length1,2431,055
definitionDH936234|Mus musculus domesticus DNA, BAC clone: B6Ng01-136H12, 5' end.DH936235|Mus musculus domesticus DNA, BAC clone: B6Ng01-136H12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,393,325 - 46,394,801)(46,271,296 - 46,272,360)
sequence
gaattcacgctccagaagagaaaactggtaatctttatgccccaccccac
ttactaacccagctgatttatactattttcgtgataaatataacatcatt
actgtttaaacatccacagatggctatgtgccaaaatacatgataaaaca
caggctcctaagagaggaactgacatcctaactagctcctaaagcagtta
taatttcctgttataataacttactatttaataggctattgggaactgcc
ttgcaatttattccataagaacagaattagtcataagtccctgctcactg
caccaatacttagaacatgataaagagcataacaggtaaggcccttgctg
tgatgtctgtagtacctcatactggtccaggaacatgtggagttgctgca
cactgattcttagatctgtctcattgaattcgtaaggaatattccaccct
aggggtccgaattttcgtctctcttgtaccaaagcatgaaagaaacagag
gccataaagcaatttcttgaattcctcctgtaatgagaagaaattgtccc
atggcattatttttctgtgaacattgcatccaacttacgaagttttttaa
ttactatagtcatattcctttgcttataaatgatatgaggctcttttctc
cattcctctcccttccatccccccaaaaccctaatacacaagtgtttttc
tgcaggtctcttggacaaaaatctggtcaatcaccctcaagtccaattgg
aacacatggctgtgtatactaagtttgtaggaaacagagcaagcccatct
aatttaaattttacaggatttttttttttgagagtggcgtattctaactg
aagcaacacaacacaaaaattatgaactctatatatagtcccagactact
gtggaagaatttcaaaggaggtaatatgacctaattggcaggtccctaac
ttcaggaatacagaatgctacagcagagatggagtaggactgcataatga
cttcttcagacatgaaactgctatgctagtagtcacttgctcccctcctc
ctggtgagcttatgggaggcagtcatcctccctaagaagagatcatggcc
atcgaggtgaacctcaaaacagctgaaaactgttggaaatgcaactcgaa
tgtgatggacaggttgaatcaaaggtagaacggatcagcagctgctcttg
tgaatcaggagaagatcgtgttagacaacatgtaccatgaatg
gaattcatcagaaggcatacaaaggtaagacaaactggaactttaagatt
taaaaagtgggaaacttgaattaaatgtattaatctcaacatgtttttta
aagctattggaaaacatactttttgttaggtatgattggattttttttcc
attttattcttttttatttcttttccttggtacaaatcttctcaggcctg
gagtccaggctggcctgtacctggagtctggctgcctctgcctaccaagt
gctatgattacaggcatatgtcagcactgcctgctagaacctcagctcag
accaaaataaaaaggcttgaattcataataactattatccaaaaacaggc
aaagtgtagcatcttagaaatggagacagtgttatcagtataattattct
ttcttaaaactgaagacacctgaaaagcctgcctagctttgtgcattaca
atatctagatgttattgttttcttttttaaatctctccctgagtgtcaca
gatgtaggccagattggagcagattaaaagcaggtaaaggcaggtttatt
aggaggcagctctcaggtgggtctactaatctccaaggtggaggtaagtg
aagtcacacatccaggctaaagcgggggagggggtaatagagcttagatg
aggagagggtgtcagctaacacctggcattgtatccacacacagtcaaaa
gcttagcccctgggcgggcactcttgggtgggttgctagaaacttggaga
tgtattgacatgttagcctggagttctctccatgtggatggagaagattt
ttctgtgtgggcagggtttagaggaagaagagcagactgggtttcccaac
ttgtgcatggatgagcagaggctgcagcctagcagttttctcttatttca
ggtgagcaggtgtatattttcatgtgcctgtagtgtttatgtttatgtat
gtttcaaatttcaaaaacaaatgcttgatagaaaataagaaggaaaatat
ggcttcagcaatactgtaaggataaaaccgctatctggggcagtgctgaa
gaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_46393325_46394801
seq2: B6Ng01-136H12.b_48_1290 (reverse)

seq1  CATTCACTTCAGAGTGGTTTTGAAACAGAAAGGGGCAAATATTCCTGATC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTAGCTGGGAATTTTTTGATCTGGGCATGGGTTTGAGGTAATACTCCCCC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TCACCCCCAACCCACCACACTTCTGATCTAGTCTGTTCCAGGCTCTCCAG  150
                                                        
seq2  --------------------------------------------------  0

seq1  TGTACCCTTCAGACTGGCTCTGACTGGGAGGCTTCCTCAATCAATGGTAC  200
                                           || || |||||||
seq2  -------------------------------------CATTC-ATGGTAC  12

seq1  ATGTTGTCTTTACCAGCATCCCTTCCTCCTCTGGATTCCCACTAGGAGGG  250
      ||||||||  || ||  |||   | |||||   ||||| ||  || ||  
seq2  ATGTTGTC--TAACACGATC---TTCTCCT---GATTCACAAGAGCAG--  52

seq1  CCCACTGCTTGGCTGAGTACCTGGTCTTTCCCTCTGATATTCTAACCTCT  300
          |||||  | |  ||        | | ||| ||  |||| ||||| |
seq2  ----CTGCT--GATCCGT--------TCTACCTTTG--ATTC-AACCTGT  85

seq1  GCTCCTTTTTCACATCTGAGTTTTGCATTTTCCCACAGTTTTCAGCTGTT  350
       |       ||||||  |||  ||||| ||||| ||||||||||||||||
seq2  CC------ATCACATTCGAG--TTGCA-TTTCCAACAGTTTTCAGCTGTT  126

seq1  ATGAGTGTCAACTCTGATGGCCCATTGATCTCTTCTTAGTGAGGATGACT  400
       ||||  ||| ||| |||||||   |||||||||||||| ||||||||||
seq2  TTGAGGTTCACCTC-GATGGCC--ATGATCTCTTCTTAGGGAGGATGACT  173

seq1  GCCTCCCATAGCCTTCACCAGGGAGGAGGGGAGCAAGTTGACTACTAGCA  450
      ||||||||||  | |||||| |||||||||||||||| ||||||||||||
seq2  GCCTCCCATAAGC-TCACCA-GGAGGAGGGGAGCAAG-TGACTACTAGCA  220

seq1  TAGCAGTTTCAATGTCTGAAGAAGTCATTATGCAGTCCTACCTCCATCTC  500
      |||||||||| ||||||||||||||||||||||||||||| |||||||||
seq2  TAGCAGTTTC-ATGTCTGAAGAAGTCATTATGCAGTCCTA-CTCCATCTC  268

seq1  TGCTGTTAGCATTCTGTATTCTTGAAGTTAGGGACCTGCCAATTTAGGTC  550
      ||||| ||||||||||||||| |||||||||||||||||||| |||||||
seq2  TGCTG-TAGCATTCTGTATTCCTGAAGTTAGGGACCTGCCAA-TTAGGTC  316

seq1  ATATTACCTCCTTTGAAATTCTTCCACAGTAGTCTGGGACTATATATAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACCTCCTTTGAAATTCTTCCACAGTAGTCTGGGACTATATATAGA  366

seq1  GTTCATAATTTTTGTGTTGTGTTGCTTCAGTTAGAATACGCCACTCTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATAATTTTTGTGTTGTGTTGCTTCAGTTAGAATACGCCACTCTCAA  416

seq1  AAAAAAAAATCCTGTAAAATTTAAATTAGATGGGCTTGCTCTGTTTCCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAATCCTGTAAAATTTAAATTAGATGGGCTTGCTCTGTTTCCTA  466

seq1  CAAACTTAGTATACACAGCCATGTGTTCCAATTGGACTTGAGGGTGATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTAGTATACACAGCCATGTGTTCCAATTGGACTTGAGGGTGATTG  516

seq1  ACCAGATTTTTGTCCAAGAGACCTGCAGAAAAACACTTGTGTATTAGGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATTTTTGTCCAAGAGACCTGCAGAAAAACACTTGTGTATTAGGGT  566

seq1  TTTGGGGGGATGGAAGGGAGAGGAATGGAGAAAAGAGCCTCATATCATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGGGATGGAAGGGAGAGGAATGGAGAAAAGAGCCTCATATCATTT  616

seq1  ATAAGCAAAGGAATATGACTATAGTAATTAAAAAACTTCGTAAGTTGGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCAAAGGAATATGACTATAGTAATTAAAAAACTTCGTAAGTTGGAT  666

seq1  GCAATGTTCACAGAAAAATAATGCCATGGGACAATTTCTTCTCATTACAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTTCACAGAAAAATAATGCCATGGGACAATTTCTTCTCATTACAG  716

seq1  GAGGAATTCAAGAAATTGCTTTATGGCCTCTGTTTCTTTCATGCTTTGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAATTCAAGAAATTGCTTTATGGCCTCTGTTTCTTTCATGCTTTGGT  766

seq1  ACAAGAGAGACGAAAATTCGGACCCCTAGGGTGGAATATTCCTTACGAAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGAGACGAAAATTCGGACCCCTAGGGTGGAATATTCCTTACGAAT  816

seq1  TCAATGAGACAGATCTAAGAATCAGTGTGCAGCAACTCCACATGTTCCTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGAGACAGATCTAAGAATCAGTGTGCAGCAACTCCACATGTTCCTG  866

seq1  GACCAGTATGAGGTACTACAGACATCACAGCAAGGGCCTTACCTGTTATG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGTATGAGGTACTACAGACATCACAGCAAGGGCCTTACCTGTTATG  916

seq1  CTCTTTATCATGTTCTAAGTATTGGTGCAGTGAGCAGGGACTTATGACTA  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTATCATGTTCTAAGTATTGGTGCAGTGAGCAGGGACTTATGACTA  966

seq1  ATTCTGTTCTTATGGAATAAATTGCAAGGCAGTTCCCAATAGCCTATTAA  1250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTTCTTATGGAATAAATTGCAAGGCAGTTCCCAATAGCCTATTAA  1016

seq1  ATAGTAAGTTATTATAACAGGAAATTATAACTGCTTTAGGAGCTAGTTAG  1300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAAGTTATTATAACAGGAAATTATAACTGCTTTAGGAGCTAGTTAG  1066

seq1  GATGTCAGTTCCTCTCTTAGGAGCCTGTGTTTTATCATGTATTTTGGCAC  1350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCAGTTCCTCTCTTAGGAGCCTGTGTTTTATCATGTATTTTGGCAC  1116

seq1  ATAGCCATCTGTGGATGTTTAAACAGTAATGATGTTATATTTATCACGAA  1400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCATCTGTGGATGTTTAAACAGTAATGATGTTATATTTATCACGAA  1166

seq1  AATAGTATAAATCAGCTGGGTTAGTAAGTGGGGTGGGGCATAAAGATTAC  1450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTATAAATCAGCTGGGTTAGTAAGTGGGGTGGGGCATAAAGATTAC  1216

seq1  CAGTTTTCTCTTCTGGAGCGTGAATTC  1477
      |||||||||||||||||||||||||||
seq2  CAGTTTTCTCTTCTGGAGCGTGAATTC  1243

seq1: chr1_46271296_46272360
seq2: B6Ng01-136H12.g_65_1119

seq1  GAATTCATCAGAAGGCATACAAAGGTAAGACAAACTGGAACTTTAAGATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCAGAAGGCATACAAAGGTAAGACAAACTGGAACTTTAAGATT  50

seq1  TAAAAAGTGGGAAACTTGAATTAAATGTATTAATCTCAACATGTTTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGTGGGAAACTTGAATTAAATGTATTAATCTCAACATGTTTTTTA  100

seq1  AAGCTATTGGAAAACATACTTTTTGTTAGGTATGATTGGATTTTTTTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATTGGAAAACATACTTTTTGTTAGGTATGATTGGATTTTTTTTCC  150

seq1  ATTTTATTCTTTTTTATTTCTTTTCCTTGGTACAAATCTTCTCAGGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTCTTTTTTATTTCTTTTCCTTGGTACAAATCTTCTCAGGCCTG  200

seq1  GAGTCCAGGCTGGCCTGTACCTGGAGTCTGGCTGCCTCTGCCTACCAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCAGGCTGGCCTGTACCTGGAGTCTGGCTGCCTCTGCCTACCAAGT  250

seq1  GCTATGATTACAGGCATATGTCAGCACTGCCTGCTAGAACCTCAGCTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGATTACAGGCATATGTCAGCACTGCCTGCTAGAACCTCAGCTCAG  300

seq1  ACCAAAATAAAAAGGCTTGAATTCATAATAACTATTATCCAAAAACAGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAATAAAAAGGCTTGAATTCATAATAACTATTATCCAAAAACAGGC  350

seq1  AAAGTGTAGCATCTTAGAAATGGAGACAGTGTTATCAGTATAATTATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGTAGCATCTTAGAAATGGAGACAGTGTTATCAGTATAATTATTCT  400

seq1  TTCTTAAAACTGAAGACACCTGAAAAGCCTGCCTAGCTTTGTGCATTACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAAACTGAAGACACCTGAAAAGCCTGCCTAGCTTTGTGCATTACA  450

seq1  ATATCTAGATGTTATTGTTTTCTTTTTTAAATCTCTCCCTGAGTGTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTAGATGTTATTGTTTTCTTTTTTAAATCTCTCCCTGAGTGTCACA  500

seq1  GATGTAGGCCAGATTGGAGCAGATTAAAAGCAGGTAAAGGCAGGTTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAGGCCAGATTGGAGCAGATTAAAAGCAGGTAAAGGCAGGTTTATT  550

seq1  AGGAGGCAGCTCTCAGGTGGGTCTACTAATCTCCAAGGTGGAGGTAAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCAGCTCTCAGGTGGGTCTACTAATCTCCAAGGTGGAGGTAAGTG  600

seq1  AAGTCACACATCCAGGCTAAAGCGGGGGAGGGGGTAATAGAGCTTAGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACACATCCAGGCTAAAGCGGGGGAGGGGGTAATAGAGCTTAGATG  650

seq1  AGGAGAGGGTGTCAGCTAACACCTGGCATTGTATCCACACACAGTCAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGGGTGTCAGCTAACACCTGGCATTGTATCCACACACAGTCAAAA  700

seq1  GCTTAGCCCCTGGGCGGGCACTCTTGGGTGGGTTGCTAGAAACTTGGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGCCCCTGGGCGGGCACTCTTGGGTGGGTTGCTAGAAACTTGGAGA  750

seq1  TGTATTGACATGTTAGCCTGGAGTTCTCTCCATGTGGATGGAGAAGATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTGACATGTTAGCCTGGAGTTCTCTCCATGTGGATGGAGAAGATTT  800

seq1  TTCTGTGTGGGCA-GGTTTAGAGGAAGAAGAGCAGACTGGGTTTCCCAAC  849
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGTGGGCAGGGTTTAGAGGAAGAAGAGCAGACTGGGTTTCCCAAC  850

seq1  TTGTGCATGGATGAGCAGAGGCTGCAGCCTAGCAGTTTTCTCTTATTTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCATGGATGAGCAGAGGCTGCAGCCTAGCAGTTTTCTCTTATTTCA  900

seq1  GGTGAGCAGTTGTATATTTTCATGTGCCTGTAGTGTTTATGTTTATGTAT  949
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGCAGGTGTATATTTTCATGTGCCTGTAGTGTTTATGTTTATGTAT  950

seq1  GTTTCAAATTTTCTAAAACAAATGCTTGATAGAAAGATAAGAAGGAAAAT  999
      |||||||| |||| ||||||||||||||||||||| ||||||||||||||
seq2  GTTTCAAA-TTTCAAAAACAAATGCTTGATAGAAA-ATAAGAAGGAAAAT  998

seq1  ATGGGCTTCCAGGCAAATACATGTGAGGATAGAGACCTGCGTATCTGGGG  1049
      || ||||| |||   ||||| ||| |||||| | ||| || |||||||||
seq2  AT-GGCTT-CAG--CAATAC-TGTAAGGATA-AAACC-GC-TATCTGGGG  1040

seq1  CAGTGGCTGAGGAATG  1065
      |||| ||||| |||||
seq2  CAGT-GCTGAAGAATG  1055