BAC Information

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BAC

Clone NameB6Ng01-136I22
Chromosome11 (Build37)1 (Build37)
Map Location 54,778,801 - 54,779,98264,367,175 - 64,367,354
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSlc22a21, Slc22a4, Pdlim4, P4ha2, LOC623647, Dbi-ps, Csf2, Il3, Acsl6, 4930404A10Rik, LOC100041400, LOC100041411, Fnip1, Rapgef6, Cdc42se2, LOC677786, LOC100041463, Lyrm7, Hint1, Gpx3, Tnip1, LOC667826
Downstream geneAnxa6, Ccdc69, Gm2a, LOC667832, Slc36a3, Slc36a2, Slc36a1, Fat2, Sparc, Atox1, G3bp, Glra1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136I22.bB6Ng01-136I22.g
ACCDH936300DH936301
length1,172516
definitionDH936300|Mus musculus domesticus DNA, BAC clone: B6Ng01-136I22, 5' end.DH936301|Mus musculus domesticus DNA, BAC clone: B6Ng01-136I22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(54,778,801 - 54,779,982)(64,367,175 - 64,367,354)
sequence
gaattcttttctcagtggcttctgtgcgcttgaggtcgggattgcccagg
gaaggatgggagagcctctgactattgcatcacttcacttccattgcagc
aggaagtgaaggccagacagaggaagtgacttctccctgagtaacttggg
gccttccagactcttagtccagtgctcaatcccacatcatactctcttcc
tcaaggcactgggcactgtcaagaacagggctgggtggtgcgaatctgta
aacccagcatgggggaggctgaggcagaagtgagtttgaggtcagtctgg
ctacatagtgagatcctatctcaaaaaataaacaagggagctggagagat
agctcagcagttaagagtacagcctgctcttccagaggtcctgagttcaa
attccagcaaccacatggtggctcacaaccatctgtaatgagatctgatg
ccctcttctggtgtgtctgaagacaactacagtgtacttatttataataa
taaataaatctttaaaaaataaataaacaaagggacgagagaaggctcag
cagttagagcatccattgctgttgtagaagacaagagcttagttcccatc
ttccttgttggtggaagcttacaattgtgtgtaactccagccctgtgcag
attcgacagccctggcctccaaagacatgtgtgaacatgtatgaatgcaa
acacacatgcacacgcgcacacacatttaaaaataaagtaaaatcttttt
taaaaaatcaaacagggggctggtgagatggctcagtgggtaagagcact
cgactgctcttccgaaggtccggagttcaaatcccagcaccacatggtgg
ctcacaaccatctgtaacgagagctgacgccctcttctggagcgtctgaa
gacagctacagtgtacttacatataatggaataaataaatctttaaaaca
aacaaacaaacaaagagcaacacacaacaacaaaaaatcccctcaaacag
cacagaaggttcacatagaagcagctacttataatagcctgtcaagataa
tttaacatcccaagaaagtccgggcagagaaacaggtgatttctggcata
aacttctcatcaacaggattaaaacatgtgtacttggcctctaggatctt
gtagaatccggcacataatgag
ctgatttaattcgaataattttaggaagaaagtttaaggaaatggtttca
gttgttttaccagaaagatgtaataaaatcagaatcaaaaatagaacgtg
cccccctcctcatagaatagtaagtaaaatctatgcaataaagaatgcaa
tgagctttcctaagttacagtaaggagagaaatagacttgggacagattt
gtgatcaaggaaaaacatacattctaggtcagctccaaggatgaggccac
aggggtgcactatgataaagcaaggccatgtaacactgttgctttgaact
tacaagaaggatcttacggaataaaccactgctttgaacttgctatcaac
atccttctgtaactccccctttgtgtaacatttcatccatgaggtaattt
tataaagaatttctgtctaagagggtataaaagagtctgagagaagaaat
aagaaataaagtgtggcttttggagctctgtgtgtgtgtgtgtgtgagtg
tgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_54778801_54779982
seq2: B6Ng01-136I22.b_46_1217

seq1  GAATTCTTTTCTCAGTGGCTTCTGTGCGCTTGAGGTCGGGATTGCCCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCTCAGTGGCTTCTGTGCGCTTGAGGTCGGGATTGCCCAGG  50

seq1  GAAGGATGGGAGAGCCTCTGACTATTGCATCACTTCACTTCCATTGCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATGGGAGAGCCTCTGACTATTGCATCACTTCACTTCCATTGCAGC  100

seq1  AGGAAGTGAAGGCCAGACAGAGGAAGTGACTTCTCCCTGAGTAACTTGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTGAAGGCCAGACAGAGGAAGTGACTTCTCCCTGAGTAACTTGGG  150

seq1  GCCTTCCAGACTCTTAGTCCAGTGCTCAATCCCACATCATACTCTCTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCAGACTCTTAGTCCAGTGCTCAATCCCACATCATACTCTCTTCC  200

seq1  TCAAGGCACTGGGCACTGTCAAGAACAGGGCTGGGTGGTGCGAATCTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCACTGGGCACTGTCAAGAACAGGGCTGGGTGGTGCGAATCTGTA  250

seq1  AACCCAGCATGGGGGAGGCTGAGGCAGAAGTGAGTTTGAGGTCAGTCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGCATGGGGGAGGCTGAGGCAGAAGTGAGTTTGAGGTCAGTCTGG  300

seq1  CTACATAGTGAGATCCTATCTCAAAAAATAAACAAGGGAGCTGGAGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATAGTGAGATCCTATCTCAAAAAATAAACAAGGGAGCTGGAGAGAT  350

seq1  AGCTCAGCAGTTAAGAGTACAGCCTGCTCTTCCAGAGGTCCTGAGTTCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGCAGTTAAGAGTACAGCCTGCTCTTCCAGAGGTCCTGAGTTCAA  400

seq1  ATTCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGATG  450

seq1  CCCTCTTCTGGTGTGTCTGAAGACAACTACAGTGTACTTATTTATAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTCTGGTGTGTCTGAAGACAACTACAGTGTACTTATTTATAATAA  500

seq1  TAAATAAATCTTTAAAAAATAAATAAACAAAGGGACGAGAGAAGGCTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATCTTTAAAAAATAAATAAACAAAGGGACGAGAGAAGGCTCAG  550

seq1  CAGTTAGAGCATCCATTGCTGTTGTAGAAGACAAGAGCTTAGTTCCCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAGAGCATCCATTGCTGTTGTAGAAGACAAGAGCTTAGTTCCCATC  600

seq1  TTCCTTGTTGGTGGAAGCTTACAATTGTGTGTAACTCCAGCCCTGTGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTGTTGGTGGAAGCTTACAATTGTGTGTAACTCCAGCCCTGTGCAG  650

seq1  ATTCGACAGCCCTGGCCTCCAAAGACATGTGTGAACATGTATGAATGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGACAGCCCTGGCCTCCAAAGACATGTGTGAACATGTATGAATGCAA  700

seq1  ACACACATGCACACGCGCACACACATTTAAAAATAAAGTAAAATCTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATGCACACGCGCACACACATTTAAAAATAAAGTAAAATCTTTTT  750

seq1  TAAAAAATCAAACAGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATCAAACAGGGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACT  800

seq1  CGACTGCTCTTCCGAAGGTCCGGAGTTCAAATCCCAGCAACCACATGGTG  850
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CGACTGCTCTTCCGAAGGTCCGGAGTTCAAATCCCAGC-ACCACATGGTG  849

seq1  GCTCACAACCATCTGTAACGAGAGCTGACGCCCTCTTCTGGAGCGTCTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACAACCATCTGTAACGAGAGCTGACGCCCTCTTCTGGAGCGTCTGA  899

seq1  AGACAGCTACAGTGTACTTACATATAAT-GAATAAATAAATCTTTAAAAC  949
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGACAGCTACAGTGTACTTACATATAATGGAATAAATAAATCTTTAAAAC  949

seq1  AAACAAACAAACAAAGAGCAACA-ACAACAACAACAAAAATCCCCTCAAA  998
      ||||||||||||||||||||||| |||||||||  |||||||||||| ||
seq2  AAACAAACAAACAAAGAGCAACACACAACAACA--AAAAATCCCCTC-AA  996

seq1  ACAGCAACAAGAAGGTTCACATAGAAGCAGCTAC-TATAATAGGCTGTCC  1047
      ||||||   ||||||||||||||||||||||||| |||||||| ||||| 
seq2  ACAGCA--CAGAAGGTTCACATAGAAGCAGCTACTTATAATAGCCTGTCA  1044

seq1  AGATAATTTTAACATCCCAAG-AAGTCCGGCCAGAG-AACAGTAGATTTC  1095
      |||||| |||||||||||||| |||||||| ||||| |||||  ||||||
seq2  AGATAA-TTTAACATCCCAAGAAAGTCCGGGCAGAGAAACAGGTGATTTC  1093

seq1  CCTGGGCATAGAACTTCTCATCAACAGGGAATAAAAACATGTGTCACCTG  1145
          |||||| |||||||||||||||||  || ||||||||||| || ||
seq2  ---TGGCATA-AACTTCTCATCAACAGG--ATTAAAACATGTGT-ACTTG  1136

seq1  GCCTCAGTGTTCTGGTAAGACACGGCCACATAATGAG  1182
      |||||   | ||| || |||  | | |||||||||||
seq2  GCCTCTAGGATCTTGT-AGAATCCGGCACATAATGAG  1172

seq1: chr1_64367175_64367354
seq2: B6Ng01-136I22.g_510_586 (reverse)

seq1  CTCACACACACACACACACACACACACACACACACACAGACATGGTTATA  50
      | ||||||||||||||||| ||||||||||||||||||||          
seq2  CACACACACACACACACACTCACACACACACACACACAGA----------  40

seq1  TTCTCTTGGTTATATTCAAGGACTGGGGCAAGGAGAAAGTTACCATCAAT  100
        |||                       ||     ||||           
seq2  -GCTC-----------------------CA-----AAAG-----------  50

seq1  GTAGTTAGAGAGAATGACAACCAGATGGAGCCCTGGGGACCCACACTTTA  150
                                              ||||||||||
seq2  ----------------------------------------CCACACTTTA  60

seq1  TTAGATAAAAATCCCAATTCTTTCTTCTCT  180
      ||         ||    || ||||||||||
seq2  TT---------TC----TTATTTCTTCTCT  77