BAC Information

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BAC

Clone NameB6Ng01-136M08
Chromosome1 (Build37)
Map Location 61,231,350 - 61,377,699
singlet/doubletdoublet
Overlap geneLOC100042566
Upstream geneNbeal1, Cyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313
Downstream genePard3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136M08.bB6Ng01-136M08.g
ACCDH936456DH936457
length941936
definitionDH936456|Mus musculus domesticus DNA, BAC clone: B6Ng01-136M08, 5' end.DH936457|Mus musculus domesticus DNA, BAC clone: B6Ng01-136M08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,231,350 - 61,232,298)(61,376,755 - 61,377,699)
sequence
gaattctgaccttaattacaagtaacttcaaatataataaaataggattt
ttatacacacagtgagagacttgcactctcttatgcagacaggacttttg
ctagccaataaaggcagtgaattcccaagatgccggcttcttcctcactc
tccccacttgagaccaaagcttgccagcttaaaacaaaggctctgctgtc
ttttgtcccaacagtgggccctctgctgatggattggctcaataagttca
aggccagatcaggatgtgttggcgcaacagttctggcccaatcaaccatc
ctagctttctttaaactgaccaaccttaagttagggaaggaaatgtcttt
agaagctttaaaacccccaaaatattgagaagagactggatttttggctt
tctgagtcctccctgtgccttgcagagggtctatgtacctgatgtatgtg
tgaattttctcaacctcccccctttcttcagtgcctttcttcaactgctg
atcctgtgggtggtactttaggtttctctgctgctaccgttttactgcat
acctttcctgccttttagttctctaaccagaagaggaaggaaaaaaaaca
acaacataactaaacaacctaaatccttagactgtatcaagaggatcccc
cagttaaaagaaaaaaaaaaaagactaaaacaggtatgaatcgcaccatg
tgtatttctaagggacttgatttatggaaagtacattcacgcttgtgcaa
agaggaagataactgcggtgtgcttggtcttgcatttgcatggctctaga
attcttaggctggatattaccaggcctttgggaagcaccagctgggggtc
atcattcagatttggaatagccctttcttgaatacttctcctgaatttct
gcccctatctcaactctgtctactgagtcacatatggaatc
gaattccctgaatgcttgtggtgtgtgagcatcttgtgaaaaacatgaat
ctattaatgtgtcagtcagacacatattgagagggatggaaaatgggctt
cagcagccagaggcttcgaggaagagcaaaagagattcaatttcactgct
tcttggatactgtcccaaagccatcgctcttttgcaccttctggcatgtc
atgtggacttgctcaagacagggttgggatttttgtaaggaggtacagtt
ttaatccctttcctgtcacaccaagtagataactcaccgtgaaacactca
gggaagggctgtaaacctcattatgacacggaactatgtaaagatgtcca
gatgtgaacattaagatgctgagccatgacgtctgggttactgggttgtt
gtggcagcagaaacataggcatcatctcatatctgttttattcttcatgc
ttggttatcttgtaaactgtaaatcagaggatcctctagaagcaaccatc
taggtgcaaactcggtggcaaatttgcctctcctcagccccaaaggattg
ccaatgctcatcaaagtccaagattacagatgtgcctatccacatctctt
tttaaagagcaggatttggagtgaccaaaacctgagtctttgaaaagtaa
agacatttgtccaaggttatcccgtgggggctagtcagaaatatagacta
gaattaaaaccaattcacctgccttttatttcagtatgtcgatgtttcaa
tctctccttgggacattacttctatacagaactcacatctacccgagatt
cctaaagacctatttttaagggtactttgtagctcactattcaatgtccc
cccctgcgctactgccgcaagaaagaaaacaggggagattttatgcccat
tgaaagctgatccaagcaccaaaggtgaaagtgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_61231350_61232298
seq2: B6Ng01-136M08.b_43_983

seq1  GAATTCAAAACCTTAATTACAAATAAAATAAAATAAAATAAAATAGGATT  50
      ||||||   ||||||||||||| |||  | ||||| ||||||||||||||
seq2  GAATTC-TGACCTTAATTACAAGTAACTTCAAATATAATAAAATAGGATT  49

seq1  TTTATACACACAGTGAGAGACTTGGACTCTCTTATGCAGACAGGACTTTT  100
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTTATACACACAGTGAGAGACTTGCACTCTCTTATGCAGACAGGACTTTT  99

seq1  GCTAGCTAATAAAGGCAGTGAATTCCCAAGATGCCGGCTTCTTCCTCACT  150
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCCAATAAAGGCAGTGAATTCCCAAGATGCCGGCTTCTTCCTCACT  149

seq1  CTCCCCACTTGAGACCAAAGCTTGCCAGCTTAAAACAAAGGCTCTGCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCACTTGAGACCAAAGCTTGCCAGCTTAAAACAAAGGCTCTGCTGT  199

seq1  CTTTTGTCCCAACAGTGGGCCCTCTGCTGATGGATTGGCTCAATAAGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTCCCAACAGTGGGCCCTCTGCTGATGGATTGGCTCAATAAGTTC  249

seq1  AAGGCCAGATCAGGATGTGTTGGCGCAACAGTTCTGGCCCAATCAACCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAGATCAGGATGTGTTGGCGCAACAGTTCTGGCCCAATCAACCAT  299

seq1  CCTAGCTTTCTTTAAACTGACCAACCTTAAGTTAGGGAAGGAAATGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCTTTCTTTAAACTGACCAACCTTAAGTTAGGGAAGGAAATGTCTT  349

seq1  TAGAAGCTTTAAAACCCCCAAAATATTGAGAAGAGACTGGATTTTTGGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCTTTAAAACCCCCAAAATATTGAGAAGAGACTGGATTTTTGGCT  399

seq1  TTCTGAGTCCTCCCTGTGCCTTGCAGAGGGTCTATGTACCTGATGTATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTCCTCCCTGTGCCTTGCAGAGGGTCTATGTACCTGATGTATGT  449

seq1  GTGAATTTTCTCAACCTCCCCCCTTTCTTCAATGCCTTTCTTCAACTGCT  500
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTGAATTTTCTCAACCTCCCCCCTTTCTTCAGTGCCTTTCTTCAACTGCT  499

seq1  GATCCTGTGGGTGGTACTTTAGGTTTCTCTGCTGCTACCGTTTTACTGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGTGGGTGGTACTTTAGGTTTCTCTGCTGCTACCGTTTTACTGCA  549

seq1  GACATTTCCTGCCTTTTAGTTCTCTAACCAGAAGAGGAAGGAAAAAAAAC  600
       || ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTCCTGCCTTTTAGTTCTCTAACCAGAAGAGGAAGGAAAAAAAAC  599

seq1  AACAACAAAACAAAACAACAAAAATCCTTAGACTGTATCAAGAGGATCCC  650
      ||||||| ||| |||||||  |||||||||||||||||||||||||||||
seq2  AACAACATAACTAAACAACCTAAATCCTTAGACTGTATCAAGAGGATCCC  649

seq1  CCAGTTTAAAAAGAAAAAAAAAAAGACTTAAACAGGTATGAATCACACCA  700
      |||| ||||||  ||||||||||||||| ||||||||||||||| |||||
seq2  CCAG-TTAAAAGAAAAAAAAAAAAGACTAAAACAGGTATGAATCGCACCA  698

seq1  TGTGTATTTCAAAGGGGACTTGATTTATGGAAAGTACATTCACGCATGTG  750
      |||||||||| || ||||||||||||||||||||||||||||||| ||||
seq2  TGTGTATTTCTAA-GGGACTTGATTTATGGAAAGTACATTCACGCTTGTG  747

seq1  CAAAGAGGAAGTATAACTGTGGTGTGCTTGGTTCTTGCATTTCAGTGGCT  800
      ||||||||||| ||||||| ||||||||||| ||||||||||   |||||
seq2  CAAAGAGGAAG-ATAACTGCGGTGTGCTTGG-TCTTGCATTTGCATGGCT  795

seq1  CTAGAACTCTTAGGCTGGATAGTTACCAGGCCTTTGGCAAGCACCAGCTG  850
      |||||| |||||||||||||| ||||||||||||||| ||||||||||||
seq2  CTAGAATTCTTAGGCTGGATA-TTACCAGGCCTTTGGGAAGCACCAGCTG  844

seq1  TGGTTCATCGCTCAGATTTGGATCAG-CCTTTCTTAAATACTTCTACTGG  899
       || |||||  |||||||||||  || |||||||| ||||||||| ||| 
seq2  GGGGTCATCATTCAGATTTGGAATAGCCCTTTCTTGAATACTTCTCCTGA  894

seq1  AATTCTGCCCTCACCTCACACTCTGTCTACTGAGTCACAATATTGGAATC  949
      | ||||||||  | |||| ||||||||||||||||||| ||| |||||||
seq2  ATTTCTGCCCCTATCTCA-ACTCTGTCTACTGAGTCAC-ATA-TGGAATC  941

seq1: chr1_61376755_61377699
seq2: B6Ng01-136M08.g_69_1003 (reverse)

seq1  CACACTTTCACCTTTGCGTGCTCTGAATCAGCTTTCAATGGGCATTAAAT  50
      |||||||||||||||| ||||| || |||||||||||||||||| |||| 
seq2  CACACTTTCACCTTTG-GTGCT-TGGATCAGCTTTCAATGGGCA-TAAAA  47

seq1  TCTCCCCCTGTTTTCTTTCTCTGCGGCAGTAGCTGCA-GTGGGGACATTT  99
      ||| |||||||||||||||| |||||||||||| ||| | ||||||| ||
seq2  TCT-CCCCTGTTTTCTTTCT-TGCGGCAGTAGC-GCAGGGGGGGACA-TT  93

seq1  GAATAGCTGAGCTACTAAGTACCCTTAAATATAGGTCTTTTAAGAAATCT  149
      |||||| |||||||| ||||||||||||| ||||||||||  || |||||
seq2  GAATAG-TGAGCTACAAAGTACCCTTAAAAATAGGTCTTT--AGGAATCT  140

seq1  CTGTGTAGATGTGAGTTCTGTATAGAAGTAATGTCCAAGGGAGAGATTGA  199
      | | |||||||||||||||||||||||||||||||| | |||||||||||
seq2  C-GGGTAGATGTGAGTTCTGTATAGAAGTAATGTCCCAAGGAGAGATTGA  189

seq1  AACATCGACATACTGAAATAAAAGGCAGGTGAATTGGTTTTAATTCTAGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCGACATACTGAAATAAAAGGCAGGTGAATTGGTTTTAATTCTAGT  239

seq1  CTATTATTTCTGACTAG-CCCCACGGGATAACCTTGGACAAATGTCTTTA  298
      ||| ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTA-TATTTCTGACTAGCCCCCACGGGATAACCTTGGACAAATGTCTTTA  288

seq1  CTTTTCAAAGACTCAGGTTTTGGTCACTCCAAATCCTGCTCTTTAAAAAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAAAGACTCAGGTTTTGGTCACTCCAAATCCTGCTCTTTAAAAAG  338

seq1  AGATGTGGATAGGCACATCTGTAATCTTGGACTTTGATGAGCATTGGCAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGGATAGGCACATCTGTAATCTTGGACTTTGATGAGCATTGGCAA  388

seq1  TCCTTTGGGGCTGAGGAGAGGCAAATTTGCCACCGAGTTTGCACCTAGAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGGGGCTGAGGAGAGGCAAATTTGCCACCGAGTTTGCACCTAGAT  438

seq1  GGTTGCTTCTAGAGGATCCTCTGATTTACAGTTTAAAAGATAACCAAGCA  498
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGTTGCTTCTAGAGGATCCTCTGATTTACAGTTTACAAGATAACCAAGCA  488

seq1  TGAAGAATAAAACAGATATGAGATGATGCCTATGTTTCTGCTGCCACAAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAATAAAACAGATATGAGATGATGCCTATGTTTCTGCTGCCACAAC  538

seq1  AACCCAGTAACCCAGACCTCATGGCTCAGCATCTTAATGTTCACATCTGG  598
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AACCCAGTAACCCAGACGTCATGGCTCAGCATCTTAATGTTCACATCTGG  588

seq1  ACATCTTTACATAGCTCCGTGTCATACTGAGGTTTACAGCCCTTCCCTGA  648
      |||||||||||||| ||||||||||| |||||||||||||||||||||||
seq2  ACATCTTTACATAGTTCCGTGTCATAATGAGGTTTACAGCCCTTCCCTGA  638

seq1  GTGTTTCACGGTGAGTTATCTACTTGGTGTGACAGGAAAGGGATTAAAAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCACGGTGAGTTATCTACTTGGTGTGACAGGAAAGGGATTAAAAC  688

seq1  TGTACCTCCTTACAAAAATCCCAACCCTGTCTTCTGCAAGTCCACATGAC  748
      |||||||||||||||||||||||||||||||||  |||||||||||||||
seq2  TGTACCTCCTTACAAAAATCCCAACCCTGTCTTGAGCAAGTCCACATGAC  738

seq1  ATGCCAGAAGGTGCAAAAGAGCGATGGCTCTGGGACAGTATCCAAGAAGC  798
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATGCCAGAAGGTGCAAAAGAGCGATGGCTTTGGGACAGTATCCAAGAAGC  788

seq1  AGTGAAATTGAATCTCTTTTGCTCTTCCTCGAAGCCTCTGGCTGCTGAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAATTGAATCTCTTTTGCTCTTCCTCGAAGCCTCTGGCTGCTGAAG  838

seq1  CCCATTTTCCATCCCTCTCAATATGTGTCTGACTGATACATTAATAGATT  898
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCCATTTTCCATCCCTCTCAATATGTGTCTGACTGACACATTAATAGATT  888

seq1  CATGTTTTTCACAAGATGCTCACACACCACAAGCATTCAGGGAATTC  945
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTTTCACAAGATGCTCACACACCACAAGCATTCAGGGAATTC  935