BAC Information

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BAC

Clone NameB6Ng01-136M13
Chromosome1 (Build37)
Map Location 35,902,349 - 35,903,430
singlet/doubletsinglet
Overlap genenone
Upstream genePlekhb2, LOC666261, LOC100041544
Downstream geneLOC666283, LOC100041091, EG666290, Hs6st1, Ugcgl1, LOC100041123, Lincr, Arid5a, 4632411B12Rik, 4930533C12Rik, Lman2l, Cnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, BC050210, EG623414, Cox5b, Actr1b, 4933424G06Rik, Zap70, Tmem131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136M13.bB6Ng01-136M13.g
ACCDH936466DH936467
length1,0781,227
definitionDH936466|Mus musculus domesticus DNA, BAC clone: B6Ng01-136M13, 5' end.DH936467|Mus musculus domesticus DNA, BAC clone: B6Ng01-136M13, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaaaagcttgcaacaaccagggatcaagagaaaagtgaatttcc
tgttctgtttgcagatcaacagtggcacacaacctattcctctcagttca
ctctgacgggcaaccatttatctagataatgcatttattatcacagttcc
actgtttcctgttgagatagatgtgcaaaaaccgaagcgccgatgacttg
cttgcacacattaactgtagggaaggaatacaaaattggacatattagat
tattttggcgttaattcaatgtttgcagcctcccgttgttctccatcacc
ccctctcctacaaatcaatttacaagggtttcgttggaaataatacttag
tagcaagagctgtgggcgaacccagctgcagcgaatactctgttactaga
agacagggaggctgaggggaccgatctccctggctcctgacagagcagct
gtgctgaatgggtctcctacctcctactcttaaaatttggtggcctaggg
caagaacacagataatgtaccacacatgagcaacactctagtattgattt
acatgcaagcatgtgtatatgttcatgtatatgcaggtacacatgtgtgt
tccatgtatgtgaggaccaatggccaacctcaggtgttctgtaggagtta
tgcaccttggtctttgagactggccctctcatgaggacctgaggcttggc
atttatttaagctggactggcaggccagtgagctccaagaatccacttgt
ctctgcctcccttctcagtaggagagttaccaagcagacattattattat
gtccagttttggggcgtgaattagcatgtgaagttttcaagttctgtgtg
ggccgcatgccactgagtttcagtttccatatctgtacaatgggatgact
gttgctctgctcacttaacatggagtaatttcccacatatcatcgttaga
tgtggggctgtggtatctgggccttgttccggtttgctagcttggtgact
tggggaaagctgttcagcctctgtaacttggcattctcatctataacact
tctttaaaggaattcttcttgtagactc
gaattccttgctcagatccaaagccctttttaaaaaaaaataagccatta
attcttgacttgttttgagtttgttaatattctggatattaatactatag
cagatgcatagccaatattatctccaactgtggggagctcaatgcttcca
tcactctccaggcccttctcagttttacgaggtcccatttgtcagcattg
gccttaattcctggccaaatggatttttatttggtaggtgcttttatacc
cctatgccctgcagggtgatacttaagttttttttttctagcaattctgg
aatttctgttttgacaatgagattgttgatccatttggagagtatttctg
tgcagaatgaaaatatgtctcatttaattctgctacatgtggacatctat
tttttttccagcaccatttgttaaagaggcggtactttctctagtgtata
tctctattttggcatctttgtcaaatctcagatggctgtagttacatgta
ttcatgttttgttccactgatctacatgtctgttttagcaccatgctgtc
tttgttactatgtatatgtaataaacaggaaattctggccatccctccaa
cattgttctttttattcaatattgctttggctctctgacatcttttatga
ttccatataaattttaggatttttttttctatttctataaaaaataaaaa
cactgtgagaattttgattgggatttcatgaaatctacaggttggttttg
ccagaattgttatttttaaaatattaattctaccaatctatgagcatggg
aggtcttctagtgtctataccatatctttgcttagatatttgaagtttct
attgttgaggtcttctgtctcctcagtcaggtttatgttcagatatatat
attttttaagctatgggaatgggactgttttcattactcctttctcagag
tatctgtcatttgcttatggaacggctactgatctcataagtcattatta
ttctgccacgttgctgaaattttgttcattctccaagtttctggaggaat
ttgggtttcatgttaacgaaaaatcatctacatattggaaaaattatact
ttctcttcataccctaatttcctagcccttatgctcaggtagcgttgaga
ccaattgtaaacgtggatggatttaagagatgtgtacagtgactctccct
aaagtgctggtgcatagaagctgttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_35902349_35903430
seq2: B6Ng01-136M13.b_48_1125 (reverse)

seq1  GAGTCTACAAG-AGGATTCCTCTAAAGGAAGTGTTATAGATGAGAAATGC  49
      ||||||||||| || |||||| |||| ||||||||||||||||| |||||
seq2  GAGTCTACAAGAAGAATTCCTTTAAA-GAAGTGTTATAGATGAG-AATGC  48

seq1  CAAGTTTACAGAGGCTGAACAGCTTTCCCCAAGTCACCAAGCTAGCAAAC  99
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAG-TTACAGAGGCTGAACAGCTTTCCCCAAGTCACCAAGCTAGCAAAC  97

seq1  CGGGACAAGGCCCAGATACCACAAGCCCCACATCTAACGATGATATGTGG  149
      ||| |||||||||||||||||| |||||||||||||||||||||||||||
seq2  CGGAACAAGGCCCAGATACCAC-AGCCCCACATCTAACGATGATATGTGG  146

seq1  GAAATTAACTCCATGTTAAGTGAGCAGAGCAACAGTCATCCCATTGTACA  199
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATT-ACTCCATGTTAAGTGAGCAGAGCAACAGTCATCCCATTGTACA  195

seq1  GATATGGAAACTGAAACTCAGTGGCATGCGGCCCACACAGAACTTGAAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGGAAACTGAAACTCAGTGGCATGCGGCCCACACAGAACTTGAAAA  245

seq1  CTTCACATGCTAATTCACGCCCCAAAACTGGACATAATAATAATGTCTGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACATGCTAATTCACGCCCCAAAACTGGACATAATAATAATGTCTGC  295

seq1  TTGGTAACTCTCCTACTGAGAAGGGAGGCAGAGACAAGTGGATTCTTGGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAACTCTCCTACTGAGAAGGGAGGCAGAGACAAGTGGATTCTTGGA  345

seq1  GCTCACTGGCCTGCCAGTCCAGCTTAAATAAATGCCAAGCCTCAGGTCCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACTGGCCTGCCAGTCCAGCTTAAATAAATGCCAAGCCTCAGGTCCT  395

seq1  CATGAGAGGGCCAGTCTCAAAGACCAAGGTGCATAACTCCTACAGAACAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGAGGGCCAGTCTCAAAGACCAAGGTGCATAACTCCTACAGAACAC  445

seq1  CTGAGGTTGGCCATTGGTCCTCACATACATGGAACACACATGTGTACCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTTGGCCATTGGTCCTCACATACATGGAACACACATGTGTACCTG  495

seq1  CATATACATGAACATATACACATGCTTGCATGTAAATCAATACTAGAGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACATGAACATATACACATGCTTGCATGTAAATCAATACTAGAGTG  545

seq1  TTGCTCATGTGTGGTACATTATCTGTGTTCTTGCCCTAGGCCACCAAATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCATGTGTGGTACATTATCTGTGTTCTTGCCCTAGGCCACCAAATT  595

seq1  TTAAGAGTAGGAGGTAGGAGACCCATTCAGCACAGCTGCTCTGTCAGGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGTAGGAGGTAGGAGACCCATTCAGCACAGCTGCTCTGTCAGGAG  645

seq1  CCAGGGAGATCGGTCCCCTCAGCCTCCCTGTCTTCTAGTAACAGAGTATT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAGATCGGTCCCCTCAGCCTCCCTGTCTTCTAGTAACAGAGTATT  695

seq1  CGCTGCAGCTGGGTTCGCCCACAGCTCTTGCTACTAAGTATTATTTCCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCAGCTGGGTTCGCCCACAGCTCTTGCTACTAAGTATTATTTCCAA  745

seq1  CGAAACCCTTGTAAATTGATTTGTAGGAGAGGGGGTGATGGAGAACAACG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAACCCTTGTAAATTGATTTGTAGGAGAGGGGGTGATGGAGAACAACG  795

seq1  GGAGGCTGCAAACATTGAATTAACGCCAAAATAATCTAATATGTCCAATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTGCAAACATTGAATTAACGCCAAAATAATCTAATATGTCCAATT  845

seq1  TTGTATTCCTTCCCTACAGTTAATGTGTGCAAGCAAGTCATCGGCGCTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTCCTTCCCTACAGTTAATGTGTGCAAGCAAGTCATCGGCGCTTC  895

seq1  GGTTTTTGCACATCTATCTCAACAGGAAACAGTGGAACTGTGATAATAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTGCACATCTATCTCAACAGGAAACAGTGGAACTGTGATAATAAA  945

seq1  TGCATTATCTAGATAAATGGTTGCCCGTCAGAGTGAACTGAGAGGAATAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTATCTAGATAAATGGTTGCCCGTCAGAGTGAACTGAGAGGAATAG  995

seq1  GTTGTGTGCCACTGTTGATCTGCAAACAGAACAGGAAATTCACTTTTCTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTGCCACTGTTGATCTGCAAACAGAACAGGAAATTCACTTTTCTC  1045

seq1  TTGATCCCTGGTTGTTGCAAGCTTTTGGAATTC  1082
      |||||||||||||||||||||||||||||||||
seq2  TTGATCCCTGGTTGTTGCAAGCTTTTGGAATTC  1078