BAC Information

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BAC

Clone NameB6Ng01-136O18
Chromosome1 (Build37)
Map Location 66,090,991 - 66,206,516
singlet/doubletdoublet
Overlap geneLOC667781, EG667786
Upstream geneCryge, Crygd, Crygc, Crygb, LOC654356, Cryga, D630023F18Rik, Idh1, Pip5k3, Pthr2, LOC100042716, EG628894, LOC100043165, LOC383520, EG667775, Crygf
Downstream geneMtap2, C030018G13Rik, Rpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136O18.bB6Ng01-136O18.g
ACCDH936569DH936570
length1,1701,184
definitionDH936569|Mus musculus domesticus DNA, BAC clone: B6Ng01-136O18, 5' end.DH936570|Mus musculus domesticus DNA, BAC clone: B6Ng01-136O18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,090,991 - 66,092,177)(66,205,298 - 66,206,516)
sequence
gaattctctgcaacactgaggaaaggagaagggtacatactgaattccct
ggcaatattatacagtatgaaggagaaggagggttggaaatcatcaaaaa
gaaaacccactcgtggcaaaattttcaacatactcctgctacatgctgac
ttctcaggaagtgatggatggagagacaatgtcattttgctaatgatttg
tttttctgtaacaaacaccagtgcaaaagctataggaaggttaaaaatat
ctctgaatgaacactttgccaagtgactaattacttcaggcctaagtcta
agtgtatattgagtaaagaccagggccatggtgaagccactgttggcatg
gagaatgtctttgcttaggtagaagagtgccacttgaagctaaactcaca
atggatagcttctcttctgaccacagcaggaaagtaattttctttttcac
tgcatgcctgcagagcctttaaactcacattaagttgaggctgagccatt
ttcaatcaatgtatgcctccagcatggcttcactgctcctttttctctct
ctcaagctcatttcctgtgttcatttatgagacagaaagaatctacgtaa
agcactcaaaaaatagtctcctttatttttttccttgctacagattgtag
aagagttggagtcatcattgaatgacgtttcctgtgcaccagtctcatct
ccatataacacagataatgatgtcttatgttaaagggtatgaatcagtta
cctgatgagaggactttagatatacagtcagatgtcaggaaacactcaga
ggaaagcactcttcatcacagagttaaataaaaagcctgttatcaagagc
tatcccaaggtgccccagtaatttcatgggcaagcattgagtagggggca
attcatgggttaaaattctcttcattaatagagttgtgagttttaaagta
ggtgaaatggaaagttaaatctttgtcagtgtttgcagatattgaaaagc
ttgggtgcttagcataaaaaatagataccaacactgaaatgtttcacata
ctttatctcacttataatttttttagaatactgactacaacatcattgta
gtgctctttaacacaaacacaccgctgactgaagtggaacaatgattgga
tctatctctaacattgaatg
gaattcaggcaggttggatccagtacctattctgtgaactaacgttaccc
attgagagaccacacccagcctcgaagactaaggcactacgtggttcttg
aaatctatggtgtggtttaaattctcttggttctgttcctcaggggaatc
ctcactaaaacaatgtatattattaagttttaaaattatgtgcacatgag
tacagatgctctgaggccaaagatttccctggaactggaattaggtggtt
gtcccctcgtaatagcgccaccgaagtttgttccctacaagaatagaaag
tactcaactgtttggctatttctccagccccttatgtgtacatcttgtca
ttgagatgctgtttctatcaaagttacacagtagagcattcaaataatga
gttttagaattgggaaaaagtcctgaaattgaacctgtgttatcttttta
ctagtcattgatgtttttcataaatttacttatgtttgaatgtaaagtcc
ttcttgaagtgcttagaactgtttgaaatcatgtaaatagctaagaggct
ttaactgaactagttctcctagacatgttagaaaagttgtttcctctatt
ttgagtacttttatctcacctttttacatttgatttctcaacttcatttt
atagcattttataggaaaaaaaatcaatattccatccttctctcttttga
ctcaataagccctaaattgtttatttttccctttccctttttggacttta
aatgtttcatttaggtaaaggcaaagtagggggctatgaagtaggggcta
cgtacaacttctgaaatgggatgttgacataaatacttcatacacagatt
ttttttattagttaacccttggtctttttgtttgttttttttttcttgca
cttaaaattttgtatattttacccaactatacaagcaaaggaatcatgta
ttacatctgaagctactcaagaccattttattccctgctatctttctgaa
tgggaggagagaagaaaggagaagagaggtagttgtagtttcctgtctgg
atgactttcgatgcacatgactttattgtttatgcatgagaatctagcag
gaaaatgtttgtcatttcaagacaatatgtaatctcttgccttcaggtat
gttcttacagttcatcatcacatcactgattcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_66090991_66092177
seq2: B6Ng01-136O18.b_49_1218

seq1  GAATTCTCTGCAACACTGAGGAAAGGAGAAGGGTACATACTGAATTCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCAACACTGAGGAAAGGAGAAGGGTACATACTGAATTCCCT  50

seq1  GGCAATATTATACAGTATGAAGGAGAAGGAGGGTTGGAAATCATCAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATATTATACAGTATGAAGGAGAAGGAGGGTTGGAAATCATCAAAAA  100

seq1  GAAAACCCACTCGTGGCAAAATTTTCAACATACTCCTGCTACATGCTGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCCACTCGTGGCAAAATTTTCAACATACTCCTGCTACATGCTGAC  150

seq1  TTCTCAGGAAGTGATGGATGGAGAGACAATGTCATTTTGCTAATGATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGGAAGTGATGGATGGAGAGACAATGTCATTTTGCTAATGATTTG  200

seq1  TTTTTCTGTAACAAACACCAGTGCAAAAGCTATAGGAAGGTTAAAAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGTAACAAACACCAGTGCAAAAGCTATAGGAAGGTTAAAAATAT  250

seq1  CTCTGAATGAACACTTTGCCAAGTGACTAATTACTTCAGGCCTAAGTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAATGAACACTTTGCCAAGTGACTAATTACTTCAGGCCTAAGTCTA  300

seq1  AGTGTATATTGAGTAAAGACCAGGGCCATGGTGAAGCCACTGTTGGCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTATATTGAGTAAAGACCAGGGCCATGGTGAAGCCACTGTTGGCATG  350

seq1  GAGAATGTCTTTGCTTAGGTAGAAGAGTGCCACTTGAAGCTAAACTCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATGTCTTTGCTTAGGTAGAAGAGTGCCACTTGAAGCTAAACTCACA  400

seq1  ATGGATAGCTTCTCTTCTGACCACAGCAGGAAAGTAATTTTCTTTTTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATAGCTTCTCTTCTGACCACAGCAGGAAAGTAATTTTCTTTTTCAC  450

seq1  TGCATGCCTGCAGAGCCTTTAAACTCACATTAAGTTGAGGCTGAGCCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGCCTGCAGAGCCTTTAAACTCACATTAAGTTGAGGCTGAGCCATT  500

seq1  TTCAATCAATGTATGCCTCCAGCATGGCTTCACTGCTCCTTTTTCTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCAATGTATGCCTCCAGCATGGCTTCACTGCTCCTTTTTCTCTCT  550

seq1  CTCAAGCTCATTTCCTGTGTTCATTTATGAGACAGAAAGAATCTACGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGCTCATTTCCTGTGTTCATTTATGAGACAGAAAGAATCTACGTAA  600

seq1  AGCACTCAAAAAATAGTCTCCTTTATTTTTTTCCTTGCTACAGATTGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTCAAAAAATAGTCTCCTTTATTTTTTTCCTTGCTACAGATTGTAG  650

seq1  AAGAGTTGGAGTCATCATTGAATGACGTTTCCTGTGCACCAGTCTCATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTGGAGTCATCATTGAATGACGTTTCCTGTGCACCAGTCTCATCT  700

seq1  CCATATAACACAGATAATGATGTCTTATGTTAAAGGGTATGAATCAGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATAACACAGATAATGATGTCTTATGTTAAAGGGTATGAATCAGTTA  750

seq1  CCTGATGAGAGGACTTTAGATATACAGTCAGATGTCAGGAAACACTCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATGAGAGGACTTTAGATATACAGTCAGATGTCAGGAAACACTCAGA  800

seq1  GGAAAGCACTCTTCATCACAGAGTTAAATAAAAAGCCTGTTATCAAGAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCACTCTTCATCACAGAGTTAAATAAAAAGCCTGTTATCAAGAGC  850

seq1  TATCCCAAGGTGCCCCAGTAATTTCATGGGCAAGCATTGAGTAGGGGGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCCAAGGTGCCCCAGTAATTTCATGGGCAAGCATTGAGTAGGGGGCA  900

seq1  ATTCATGGGTTAAAATTCTCTTCATTAATAGAGTTGTGAGTTTTAAAGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGGGTTAAAATTCTCTTCATTAATAGAGTTGTGAGTTTTAAAGTA  950

seq1  GGTGAAATGGAAAGTTAAAATCTTTGTCAGTGTTTGCAAGATATTGAAAA  1000
      |||||||||||||||| |||||||||||||||||||| |||||||| |||
seq2  GGTGAAATGGAAAGTT-AAATCTTTGTCAGTGTTTGC-AGATATTG-AAA  997

seq1  AGCTTGGGTTGCTTAAGCATAAAAAATAAGATAACCAACACTGAAATGTT  1050
      |||||||| ||||| |||||||||||| |||| |||||||||||||||||
seq2  AGCTTGGG-TGCTT-AGCATAAAAAAT-AGAT-ACCAACACTGAAATGTT  1043

seq1  TCACATACTTTATCTCACTTAATAATTTTTTTAAAGAATAACTTGACTAC  1100
      |||||||||||||||||||| |||||||||||  ||||||   |||||||
seq2  TCACATACTTTATCTCACTT-ATAATTTTTTT--AGAATA--CTGACTAC  1088

seq1  AACATCATTGTAGTGCTCATTAACACAAAACCACACCGCTGACTGAAAGT  1150
      |||||||||||||||||| ||||||||||  |||||||||||||| ||||
seq2  AACATCATTGTAGTGCTCTTTAACACAAA--CACACCGCTGACTG-AAGT  1135

seq1  GGAACAATGATTGGAATCTATCTCTAACATTGTAATG  1187
      |||||||||||||| ||||||||||||||||| ||||
seq2  GGAACAATGATTGG-ATCTATCTCTAACATTG-AATG  1170

seq1: chr1_66205298_66206516
seq2: B6Ng01-136O18.g_66_1249 (reverse)

seq1  TGGAATCAGTGTGATGTGTGTTTGATGGAAGCTGGGTAAAGAACAGTAGC  50
      ||||||||  ||||||||    |||||  | |||    ||||||| || |
seq2  TGGAATCA--GTGATGTG---ATGATG--AACTG---TAAGAACA-TA-C  38

seq1  CTGAAAAGCAAAGAGATTTAACATATTTGGTCCCTTGGAATGACACACAT  100
      |||  |||  ||||||||  |||||||  ||  |||| ||||||| ||||
seq2  CTG--AAGGCAAGAGATT--ACATATT--GT--CTTGAAATGACAAACAT  80

seq1  TTCTCCTTGCTAGGATGTCTCCATTGCAT-AACAGTAAAGTCATGTTGCC  149
      || ||| ||||| ||| ||||   ||||| |||| |||||||||||   |
seq2  TT-TCC-TGCTA-GAT-TCTC--ATGCATAAACAATAAAGTCATGT--GC  122

seq1  ATCGAAAATGTCATCCAAGACAGGAAACTACAACTACCCTCTCTGTCTTC  199
      |||||||  ||||||| ||||||||||||||||||| ||||||| || ||
seq2  ATCGAAA--GTCATCC-AGACAGGAAACTACAACTA-CCTCTCT-TC-TC  166

seq1  CTTTCTTCTCTTCCTCCCATTCAGAAAGATAGCAGGGAATAAAATGGTCT  249
      |||||||||| |||||||||||||||||||||||||||||||||||||| 
seq2  CTTTCTTCTC-TCCTCCCATTCAGAAAGATAGCAGGGAATAAAATGGTC-  214

seq1  TTGAGTAGCTTCAGATGTAATACATGATTCCTTTGCTTGTATAGTTGGGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTAGCTTCAGATGTAATACATGATTCCTTTGCTTGTATAGTTGGGT  264

seq1  AAAATATACAAAATTTTAAGTGCAAGAAAAAAAAAACAAACAAAAAGACC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATACAAAATTTTAAGTGCAAGAAAAAAAAAACAAACAAAAAGACC  314

seq1  AAGGGTTAACTAATAAAAAAAATCTGTGTATGAAGTATTTATGTCAACAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTAACTAATAAAAAAAATCTGTGTATGAAGTATTTATGTCAACAT  364

seq1  CCCATTTCAGAAGTTGTACGTAGCCCCTACTTCATAGCCCCCTACTTTGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTTCAGAAGTTGTACGTAGCCCCTACTTCATAGCCCCCTACTTTGC  414

seq1  CTTTACCTAAATGAAACATTTAAAGTCCAAAAAGGGAAAGGGAAAAATAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCTAAATGAAACATTTAAAGTCCAAAAAGGGAAAGGGAAAAATAA  464

seq1  ACAATTTAGGGCTTATTGAGTCAAAAGAGAGAAGGATGGAATATTGATTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTAGGGCTTATTGAGTCAAAAGAGAGAAGGATGGAATATTGATTT  514

seq1  TTTTTCCTATAAAATGCTATAAAATGAAGTTGAGAAATCAAATGTAAAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTATAAAATGCTATAAAATGAAGTTGAGAAATCAAATGTAAAAA  564

seq1  GGTGAGATAAAAGTACTCAAAATAGAGGAAACAACTTTTCTAACATGTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGATAAAAGTACTCAAAATAGAGGAAACAACTTTTCTAACATGTCT  614

seq1  AGGAGAACTAGTTCAGTTAAAGCCTCTTAGCTATTTACATGATTTCAAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAACTAGTTCAGTTAAAGCCTCTTAGCTATTTACATGATTTCAAAC  664

seq1  AGTTCTAAGCACTTCAAGAAGGACTTTACATTCAAACATAAGTAAATTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTAAGCACTTCAAGAAGGACTTTACATTCAAACATAAGTAAATTTA  714

seq1  TGAAAAACATCAATGACTAGTAAAAAGATAACACAGGTTCAATTTCAGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAACATCAATGACTAGTAAAAAGATAACACAGGTTCAATTTCAGGA  764

seq1  CTTTTTCCCAATTCTAAAACTCATTATTTGAATGCTCTACTGTGTAACTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCCCAATTCTAAAACTCATTATTTGAATGCTCTACTGTGTAACTT  814

seq1  TGATAGAAACAGCATCTCAATGACAAGATGTACACATAAGGGGCTGGAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGAAACAGCATCTCAATGACAAGATGTACACATAAGGGGCTGGAGA  864

seq1  AATAGCCAAACAGTTGAGTACTTTCTATTCTTGTAGGGAACAAACTTCGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCCAAACAGTTGAGTACTTTCTATTCTTGTAGGGAACAAACTTCGG  914

seq1  TGGCGCTATTACGAGGGGACAACCACCTAATTCCAGTTCCAGGGAAATCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGCTATTACGAGGGGACAACCACCTAATTCCAGTTCCAGGGAAATCT  964

seq1  TTGGCCTCAGAGCATCTGTACTCATGTGCACATAATTTTAAAACTTAATA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTCAGAGCATCTGTACTCATGTGCACATAATTTTAAAACTTAATA  1014

seq1  ATATACATTGTTTTAGTGAGGATTCCCCTGAGGAACAGAACCAAGAGAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACATTGTTTTAGTGAGGATTCCCCTGAGGAACAGAACCAAGAGAAT  1064

seq1  TTAAACCACACCATAGATTTCAAGAACCACGTAGTGCCTTAGTCTTCGAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACCACACCATAGATTTCAAGAACCACGTAGTGCCTTAGTCTTCGAG  1114

seq1  GCTGGGTGTGGTCTCTCAATGGGTAACGTTAGTTCACAGAATAGGTACTG  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTGTGGTCTCTCAATGGGTAACGTTAGTTCACAGAATAGGTACTG  1164

seq1  GATCCAACCTGCCTGAATTC  1219
      ||||||||||||||||||||
seq2  GATCCAACCTGCCTGAATTC  1184