BAC Information

Click to search

BAC

Clone NameB6Ng01-136P08
Chromosome1 (Build37)
Map Location 18,239,018 - 18,240,192
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383495, Rbm6-ps1, Ppia-ps1_125.1, Pi15, Crispld1, LOC665564, LOC100040126, Crisp4, EG574082, EG654460
Downstream geneDefb17, LOC383499, EG435611, LOC100040189, Tcfap2d, LOC100040413, Tcfap2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-136P08.bB6Ng01-136P08.g
ACCDH936597DH936598
length1,1541,165
definitionDH936597|Mus musculus domesticus DNA, BAC clone: B6Ng01-136P08, 5' end.DH936598|Mus musculus domesticus DNA, BAC clone: B6Ng01-136P08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaacggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagattccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgccggggctcagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
atggagagctagagaaagtagccaaggagctaaagggatctgcaacccta
taggtggacacattatgagctacagtaccccggagctcttgactctagct
gcatatatatcaaagatgctagtcggcatcactgaagagaggtcattgac
tgcaaactttatatgccagtaaggggaatacaggcaaagggaaagggtgg
gcag
gaattcttttcctgttactgagttttttcatcagattttaatataaggtt
ttgttcctagacctaatttaaattgttatgccatatttgtttgctgtcca
aaattagggaggcctgatcttttctaaagggaaatggaggagacatggat
gtgaggcagatgggaggtatggagagggcctgggacaagagaaaggagaa
gaatacacagaatggctgtaatatctaagagaaaaaataatggataaata
ataaataggtagataggtaaaaatatgagtcataattcatgcattttcta
gtgaatttagattcagtccttccttggttttacatgttctagcaggtatg
gtgctgacattttatttgaaggccaataagtagttatattaaatgcttcc
aggtgctggtgagatggctcagcgggtaagagcagtgactgctctttcga
acgttctgagttcaaatccctgcaactacatgctggctcacaaccatccg
taacgagatctgatgccctcttctggtgtttcagaagacagctacagtgt
acttatgcataaataataagtctttaaaaatgcttcctcagcaaacatct
tttatgaagtatcattttactctttccacattataaattcagaatttgct
ttaaattccattttgaaatctttgcattgtctatatatgaaaaactttgt
tctatcatccctattacaagatagacaacagaaagtgtattcactgactt
tcacctttattctgcctcaattgttgtattcccttaaatgtacaccatct
gagaggcagcctattgtttgaatgatgcaagaagttttaaaacgtgattt
gattgtgttttctataataatctattaatatttgatagatgaatataaac
accactaatttaacttcacataatttcctttatagttctggttgtatttt
cttcatatatttgaatcactgtacaaagatgaatgaatagcagaaatttc
cctctcttattttgaatggttttaataataatggaattatggtactttgc
tccttcttcccttctttcaacctgctcatccaccttctagacacttctca
tctcatacattcagatcacaggcctctattgtcattgattaattgaaaca
taccatatctgtaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_18239018_18240192
seq2: B6Ng01-136P08.g_69_1233 (reverse)

seq1  TGTACAGATAT-GTATGTTTCAAATGTAATCAATGACAAT-GAGG-CTGT  47
      ||||||||||| |||||||||||   |||||||||||||| |||| ||||
seq2  TGTACAGATATGGTATGTTTCAA--TTAATCAATGACAATAGAGGCCTGT  48

seq1  GAACTTGAATGTATGAGAATGAGAAGGTGCTAGGAAGGGTGGATGAGCAG  97
      || | |||||||||||| ||||||||   ||||  | |||||||||||| 
seq2  GATC-TGAATGTATGAG-ATGAGAAGTGTCTAG--AAGGTGGATGAGCA-  93

seq1  GGTTGAAAGGAGGGAAAGAAGGAGCAAAGGTACATAATTCCATTATAATT  147
      ||||||||| |||| ||||||||||||||   |||||||||||||| |||
seq2  GGTTGAAAGAAGGG-AAGAAGGAGCAAAGTACCATAATTCCATTATTATT  142

seq1  AAAAACATTCAAAATAAGAGGAGGGGAAATTTCTGCCTATTCATTCATCT  197
      |||| |||||||||||||||   |||||||||||| ||||||||||||||
seq2  AAAACCATTCAAAATAAGAG--AGGGAAATTTCTG-CTATTCATTCATCT  189

seq1  TTGTACAGTGATTCAAAATATATGAAGAAAAATACAA-CAGAACTATAAA  246
      |||||||||||||| |||||||||||| ||||||||| ||||||||||||
seq2  TTGTACAGTGATTC-AAATATATGAAG-AAAATACAACCAGAACTATAAA  237

seq1  GGAAATAATGTGAAGTTAAAATTAGTGGTGTTAATATTCATCTATCAAAT  296
      |||||| |||||||||| |||||||||||||| |||||||||||||||||
seq2  GGAAATTATGTGAAGTT-AAATTAGTGGTGTTTATATTCATCTATCAAAT  286

seq1  ATTAATAGATTATTATAGAAAACACAATCAAATCACGTTTTAAAACTTCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATAGATTATTATAGAAAACACAATCAAATCACGTTTTAAAACTTCT  336

seq1  TGCATCATTCAAACAATAGGCTGCCTCTCAGATGGTGTACATTTAAGGGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCATTCAAACAATAGGCTGCCTCTCAGATGGTGTACATTTAAGGGA  386

seq1  ATACAACAATTGAGGCAGAATAAAGGTGAAAGTCAGTGAATACACTTTCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAACAATTGAGGCAGAATAAAGGTGAAAGTCAGTGAATACACTTTCT  436

seq1  GTTGTCTATCTTGTAATAGGGATGATAGAACAAAGTTTTTCATATATAGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCTATCTTGTAATAGGGATGATAGAACAAAGTTTTTCATATATAGA  486

seq1  CAATGCAAAGATTTCAAAATGGAATTTAAAGCAAATTCTGAATTTATAAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCAAAGATTTCAAAATGGAATTTAAAGCAAATTCTGAATTTATAAT  536

seq1  GTGGAAAGAGTAAAATGATACTTCATAAAAGATGTTTGCTGAGGAAGCAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAGAGTAAAATGATACTTCATAAAAGATGTTTGCTGAGGAAGCAT  586

seq1  TTTTAAAGACTTATTATTTATGCATAAGTACACTGTAGCTGTCTTCTGAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGACTTATTATTTATGCATAAGTACACTGTAGCTGTCTTCTGAA  636

seq1  ACACCAGAAGAGGGCATCAGATCTCGTTACGGATGGTTGTGAGCCAGCAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGAAGAGGGCATCAGATCTCGTTACGGATGGTTGTGAGCCAGCAT  686

seq1  GTAGTTGCAGGGATTTGAACTCAGAACGTTCGAAAGAGCAGTCACTGCTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTTGCAGGGATTTGAACTCAGAACGTTCGAAAGAGCAGTCACTGCTC  736

seq1  TTACCCGCTGAGCCATCTCACCAGCACCTGGAAGCATTTAATATAACTAC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCCGCTGAGCCATCTCACCAGCACCTGGAAGCATTTAATATAACTAC  786

seq1  TTATTGGCCTTCAAATAAAATGTCAGCACCATACCTGCTAGAACATGTAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGGCCTTCAAATAAAATGTCAGCACCATACCTGCTAGAACATGTAA  836

seq1  AACCAAGGAAGGACTGAATCTAAATTCACTAGAAAATGCATGAATTATGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGGAAGGACTGAATCTAAATTCACTAGAAAATGCATGAATTATGA  886

seq1  CTCATATTTTTACCTATCTACCTATTTATTATTTATCCATTATTTTTTCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATTTTTACCTATCTACCTATTTATTATTTATCCATTATTTTTTCT  936

seq1  CTTAGATATTACAGCCATTCTGTGTATTCTTCTCCTTTCTCTTGTCCCAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATATTACAGCCATTCTGTGTATTCTTCTCCTTTCTCTTGTCCCAG  986

seq1  GCCCTCTCCATACCTCCCATCTGCCTCACATCCATGTCTCCTCCATTTCC  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTCCATACCTCCCATCTGCCTCACATCCATGTCTCCTCCATTTCC  1036

seq1  CTTTAGAAAAGATCAGGCCTCCCTAATTTTGGACAGCAAACAAATATGGC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGAAAAGATCAGGCCTCCCTAATTTTGGACAGCAAACAAATATGGC  1086

seq1  ATAACAATTTAAATTAGGTCTAGGAACAAAACCTTATATTAAAATCTGAT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAATTTAAATTAGGTCTAGGAACAAAACCTTATATTAAAATCTGAT  1136

seq1  GAAAAAACTCAGTAACAGGAAAAGAATTC  1175
      |||||||||||||||||||||||||||||
seq2  GAAAAAACTCAGTAACAGGAAAAGAATTC  1165