BAC Information

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BAC

Clone NameB6Ng01-137F08
Chromosome1 (Build37)
Map Location 155,853,157 - 155,997,174
singlet/doubletdoublet
Overlap geneLOC100043359
Upstream geneNmnat2, Lamc2, Lamc1, EG667795, EG626058, 1700012A16Rik, Dhx9, Npl, LOC626096, Rgs8, Rgs16, Rnasel, LOC100043347, Rgsl1, 5830403L16Rik, EG433365, Teddm1, LOC100043357, Glul
Downstream geneCacna1e, LOC671336, Ier5, Mr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137F08.bB6Ng01-137F08.g
ACCDH936877DH936878
length1,133298
definitionDH936877|Mus musculus domesticus DNA, BAC clone: B6Ng01-137F08, 5' end.DH936878|Mus musculus domesticus DNA, BAC clone: B6Ng01-137F08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(155,853,157 - 155,854,287)(155,996,873 - 155,997,174)
sequence
gaattcttcactagaggtttccctgcttatccagccatctctatgtcggc
gtagatagagtcttggttatttaccgcgcaccttgggttgattgaggctt
ccttactttatggctccgatgcttctagatctccccactgcaggctcttc
acttcatcctgagttcctctggcgtgctcccgtcaattttcttccccctt
ctcttttagttttgagcacttccttattttctggcacccgagatgttttg
aacctttcttgtctatttctggcttgagtcacagtcagccgtttctccac
agcgtttgttccactttttaatactgctgatcgatactgatgttacatga
tgtaccttttctcttctctttcttccctccgccaacgacactgcaggttt
cactggggcaggaagattgttgttttgctgcttataaagtcagtttggtc
aggtcagctctgaggttttggttttgttgtttttagtttcttttgcttat
ttgttttatttttctgagagagggtctcattgtatagcctggaactctct
acatagtccaggctagccccaaacagatccatctgttttgccttcccagt
gctgggactaaaggtgtgcgttctatgcccttctcaataggtattttttt
ctctctgaacttttaatatactcttcagaagctgggaaaaattgccattt
acttgttttatttattttattgatgggttatcaaatatcccaaggtgact
atgaacccattatacagccaagggtaactttaaactcacatcttcctgtc
tctacctcctgagtgttgggatcacagatgcatgctgtcatgcctgattc
atgtggtgatggggactgaagccaggggactttgagcatgctacataagt
actttacaaactgtactacatgcccaaccttttttgggctcttggggagt
ttggccatcatagctaaatttattctaaacttcccttcatctcctgatga
cttacttaatcaaaagtgacccatggccttaagtctggtacttctggaag
ataaaggtaggtgatgtcctgagagtgaaggccagcttggtctacatagt
tacctgggagcatctctagattattagtgagac
aatgtcatgtccatcacaaaaggcaattggggaaggggctctatgtctta
ctaaataatactgcctgccttctcctctatacaggtaccagtctgatcct
gctgagtcctaggcatgtggtggtgagaaggagaacttcagacagtggtg
catcacttggctgaaaacacaaatctgcatctctctctctctctttctct
ctttctctctttctctctttctctctctctctctctctctctctctctct
ctctctctctctctctctctctctctctgtctctctctctctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_155853157_155854287
seq2: B6Ng01-137F08.b_48_1180

seq1  GAATTCTTCACTAGAGGTTTCCCTGCTTATCCAGCCATCTCTATGTCGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCACTAGAGGTTTCCCTGCTTATCCAGCCATCTCTATGTCGGC  50

seq1  GTAGATAGAGTCTTGGTTATTTACCGCGCACCTTGGGTTGATTGAGGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATAGAGTCTTGGTTATTTACCGCGCACCTTGGGTTGATTGAGGCTT  100

seq1  CCTTACTTTATGGCTCCGATGCTTCTAGATCTCCCCACTGCAGGCTCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACTTTATGGCTCCGATGCTTCTAGATCTCCCCACTGCAGGCTCTTC  150

seq1  ACTTCATCCTGAGTTCCTCTGGCGTGCTCCCGTCAATTTTCTTCCCCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATCCTGAGTTCCTCTGGCGTGCTCCCGTCAATTTTCTTCCCCCTT  200

seq1  CTCTTTTAGTTTTGAGCACTTCCTTATTTTCTGGCACCCGAGATGTTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTAGTTTTGAGCACTTCCTTATTTTCTGGCACCCGAGATGTTTTG  250

seq1  AACCTTTCTTGTCTATTTCTGGCTTGAGTCACAGTCAGCCGTTTCTCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTCTTGTCTATTTCTGGCTTGAGTCACAGTCAGCCGTTTCTCCAC  300

seq1  AGCGTTTGTTCCACTTTTTAATACTGCTGATCGATACTGATGTTACATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTTTGTTCCACTTTTTAATACTGCTGATCGATACTGATGTTACATGA  350

seq1  TGTACCTTTTCTCTTCTCTTTCTTCCCTCCGCCAACGACACTGCAGGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTTTTCTCTTCTCTTTCTTCCCTCCGCCAACGACACTGCAGGTTT  400

seq1  CACTGGGGCAGGAAGATTGTTGTTTTGCTGCTTATAAAGTCAGTTTGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGGCAGGAAGATTGTTGTTTTGCTGCTTATAAAGTCAGTTTGGTC  450

seq1  AGGTCAGCTCTGAGGTTTTGGTTTTGTTGTTTTTAGTTTCTTTTGCTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGCTCTGAGGTTTTGGTTTTGTTGTTTTTAGTTTCTTTTGCTTAT  500

seq1  TTGTTTTATTTTTCTGAGAGAGGGTCTCATTGTATAGCCTGGAACTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTATTTTTCTGAGAGAGGGTCTCATTGTATAGCCTGGAACTCTCT  550

seq1  ACATAGTCCAGGCTAGCCCCAAACAGATCCATCTGTTTTGCCTTCCCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTCCAGGCTAGCCCCAAACAGATCCATCTGTTTTGCCTTCCCAGT  600

seq1  GCTGGGACTAAAGGTGTGCGTTCTATGCCCTTCTCAATAGGTATTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGACTAAAGGTGTGCGTTCTATGCCCTTCTCAATAGGTATTTTTTT  650

seq1  CTCTCTGAACTTTTAATATACTCTTCAGAAGCTGGGAAAAATTGCCATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGAACTTTTAATATACTCTTCAGAAGCTGGGAAAAATTGCCATTT  700

seq1  ACTTGTTTTATTTATTTTATTGATGGGTTATCAAATATCCCAAGGTGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTTTATTTATTTTATTGATGGGTTATCAAATATCCCAAGGTGACT  750

seq1  ATGAACCCATTATACAGCCAAGGGTAACTTTAAACTCACATCTTCCTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACCCATTATACAGCCAAGGGTAACTTTAAACTCACATCTTCCTGTC  800

seq1  TCTACCTCCTGAGTGTTGGGATCACAGATGCATGCTGTCATGCCTGATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTCCTGAGTGTTGGGATCACAGATGCATGCTGTCATGCCTGATTC  850

seq1  ATGTGGTGATGGGGACTGAAGCCAGGGGACTTTGAGCATGCTACATAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTGATGGGGACTGAAGCCAGGGGACTTTGAGCATGCTACATAAGT  900

seq1  ACTCTACAAACTGTACTACATGCCCAACCTTTGTTGGGCTCTT-GGGAGT  949
      ||| |||||||||||||||||||||||||||| |||||||||| ||||||
seq2  ACTTTACAAACTGTACTACATGCCCAACCTTTTTTGGGCTCTTGGGGAGT  950

seq1  TTGGCCAATCATAGCT-AATTTATTCTAAACTTCCCTTCATCTCCTGATG  998
      |||||| ||||||||| |||||||||||||||||||||||||||||||||
seq2  TTGGCC-ATCATAGCTAAATTTATTCTAAACTTCCCTTCATCTCCTGATG  999

seq1  ACTTTACTTAATCAAAAGTGACACAT-GCCTTTAGTCCTGGTAC-TCTGG  1046
      || ||||||||||||||||||| ||| ||||| ||| ||||||| |||||
seq2  AC-TTACTTAATCAAAAGTGACCCATGGCCTTAAGT-CTGGTACTTCTGG  1047

seq1  AAG-TAGAGGTAGGTGGATGT-CTGAG-GTGAAGGCCAGCCTGGTCTACA  1093
      ||| || |||||||| ||||| ||||| |||||||||||| |||||||||
seq2  AAGATAAAGGTAGGT-GATGTCCTGAGAGTGAAGGCCAGCTTGGTCTACA  1096

seq1  TAGTTACTTGGAGGCCATCCAAAGCTATTTAGTGAGAC  1131
      ||||||| ||| |  ||||   || |  ||||||||||
seq2  TAGTTACCTGG-GAGCATCTCTAGATTATTAGTGAGAC  1133

seq1: chr1_155996873_155997174
seq2: B6Ng01-137F08.g_68_371 (reverse)

seq1  --AGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAG  48
        ||||||||||||||||| | ||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAAAGAGAGAAAGAG  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAAAGAGAGAAAGAG  100

seq1  AGAAAGAGAGAGAGAGAGATGCAGATTTGTGTTTTCAGCCAAGTGATGCA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGAGAGAGAGAGATGCAGATTTGTGTTTTCAGCCAAGTGATGCA  150

seq1  CCACTGTCTGAAGTTCTCCTTCTCACCACCACATGCCTAGGACTCAGCAG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGTCTGAAGTTCTCCTTCTCACCACCACATGCCTAGGACTCAGCAG  200

seq1  GATCAGACTGGTACCTGTATAGAGGAGAAGGCAGGCAGTATTATTTAGTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGACTGGTACCTGTATAGAGGAGAAGGCAGGCAGTATTATTTAGTA  250

seq1  AGACATAGAGCCCCTTCCCCAATTGCCTTTTGTGATGGACATGACATTGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAGAGCCCCTTCCCCAATTGCCTTTTGTGATGGACATGACATTGA  300

seq1  ATTC  302
      ||||
seq2  ATTC  304