BAC Information

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BAC

Clone NameB6Ng01-137J24
Chromosome1 (Build37)
Map Location 9,568,034 - 9,663,988
singlet/doubletdoublet
Overlap geneAdhfe1, 3110035E14Rik, Mybl1
Upstream geneSntg1, LOC100039474, LOC620444, EG665007, LOC665103, LOC100039464, EG620853, LOC665138, Rrs1, LOC620542
Downstream geneVcpip1, LOC100039536, LOC665173, Sgk3, EG620986, LOC100039643, 6030422M02Rik, LOC100039596, 4930418G15Rik, Cops5, Cspp1, Arfgef1, Cpa6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137J24.bB6Ng01-137J24.g
ACCDH937097DH937098
length1,1571,068
definitionDH937097|Mus musculus domesticus DNA, BAC clone: B6Ng01-137J24, 5' end.DH937098|Mus musculus domesticus DNA, BAC clone: B6Ng01-137J24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,662,805 - 9,663,988)(9,568,034 - 9,569,129)
sequence
gaattcacttcctcatttagttttttaacacatgtcctggaaatgaacaa
cttaatatagaaaacccttcctttacatcaaccccaatttgtgggcagaa
agttctcattacaactcctcttcagaaggaagcaacccccaaagatcaaa
aagaaaatgtagggtaagtctgtattaaataattatgttaggaaaaactg
gaagcatgttagaagtatgtcagcattttattcaaatgaatggtgtatcc
ataatctttagttctataggatttagaagtttgtaattgttgtttttaaa
gtcacatcctcttgtttctgtagaatactggaaactggctaaatttagca
taaaaattttattgcaagcaaaatattcttagtacttttttctaagtcat
tttttctttaaaattatacgagtataaccgactctagacaaccatacttt
agatagctctgtgtgatgcattaaaaatcatatgtctggtctacagagtg
agttccaggacagccagggctacacagagaaaccctgtcttggaaaaaaa
aaacccaaaaaacaaacaaacaaacaacaacaacaaatcatgtctatata
aaaatatagcttatgctttttatggctttgcttttgttaacatttatgac
ctcacatgtgacaataatataaatatctgaatgactgactagattcagaa
ctcctactattagaagatctatactgggcaccacaccaagaactcctact
ccttttaagaatgcacttgctgctcaggaaaaaaaatatggacctcttaa
aattgtggtatgtatactctttattctcaagcacttttctagttttaatt
taaaaaactgggttttatcattttgaaatttttagtattaaaaaagtgta
cattgaaatggaaacattttgtttctaatttataaatatgagtttgttaa
tcttccttggtctttagatacccttactggctatttaaatttttatgttc
tcgtgtactagaagaaaacagtgtagtggcatgctatgttaaacacgtat
gtagtagtttagtagttcactgtagtagaatatattttgactatttaatc
ttctaaatatgtggctagaactaatgggtcagggaatttctgagtcagtt
tttcttc
gaattctttatccttcaagtatttgatgcttttcctaacagtagccagat
gtctagatgtgactcaccagaaatgtctggcattcatcttgacaatgact
ctgcaaaggaaaatgtaaaggccatgcattaagaaacagattttggaagc
ctttttttttttttaatcttgaaactcaccattttgatctttacaatttg
acagcatgtaaaaagaagtgttttgtaaattgcccactattttaagtatg
agagcggaaacaaggccagtgtctgtaaatcaagcactttcatgttagaa
gtaacaagtgcatttttctcattttaaatcctatttttttctattgattt
tcttttaaaaaccatttctagagttacaggtttgtttacttggttttctt
ggcaagggagggagaatgaaaagaatgacattgaagagtccatatgctct
tctcatgctccgcgcatggagttatgacagacgacaatgctttcacttac
gtcacacatctctaatttacttatgagctaaacactaattcattctaagt
tgagccacgtcactgtgatttattgtcacatgccacaataagcatgtttt
gctctcttgtcccttctgcaggaagggctgtgttgagttgggcattgttt
gtatagtgctggacacagctgcagggtgtttttacgtgttcaatgaagta
attctgttctcagaaagctcagacaagtacagtatcaaaacagaaagtgt
gtgcccaaacactgctttcctggcccctgcaaccccgaaggaagattaat
ggttgtttggattggaagttgtaccctaatgaagcatgttacccctgggg
aaaggggtctgagtaggataactgttcacctccaggtcacactgcacagg
ctatgattcctgatgctgcaacccaaccagacagctgccattaagtgctg
gtctctggagcatggcacacagcattcccatcaaatggctgggaagaagt
ctctaagcacagcacagtgaatggaggataggtcttgagcccagctgaat
gatgcactgcttgggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_9662805_9663988
seq2: B6Ng01-137J24.b_47_1203 (reverse)

seq1  GAAGAAAAAACTGAACTTCAAGAAGATTCCCTGACCCATTAGTTTCCTAT  50
      |||| |||||||| |||   |||| |||||||||||||||||||  ||| 
seq2  GAAG-AAAAACTG-ACT--CAGAA-ATTCCCTGACCCATTAGTT--CTA-  42

seq1  GCAACATTATTTAAGAGATTAGATATGTCAAAATATTAATTCTACTACAG  100
      || ||| ||||||  |||||| ||| ||||||||||  ||||||||||||
seq2  GCCACA-TATTTAGAAGATTAAATA-GTCAAAATAT--ATTCTACTACAG  88

seq1  TGAAACTACTAAACTACTACATACGTGTTTTAACATTAAGCATGCCACTA  150
      || |||||||||||||||||||||||| ||||||||  ||||||||||||
seq2  TG-AACTACTAAACTACTACATACGTG-TTTAACAT--AGCATGCCACTA  134

seq1  ACAACTGTTTTCTTCTAGTTAACACGAGAACATAAAAATTTAAAATAAGC  200
         ||||||||||||||||  |||||||||||||||||||||||   |||
seq2  --CACTGTTTTCTTCTAGT--ACACGAGAACATAAAAATTTAAA--TAGC  178

seq1  CAAGTAAAGGGTTATCTAAAGACCAAGGAAGATTAAACAAACTCATATTT  250
      | |||||  || |||||||||||||||||||||| |||||||||||||||
seq2  C-AGTAA--GGGTATCTAAAGACCAAGGAAGATT-AACAAACTCATATTT  224

seq1  ATAAATTAAGAAACAAAATGTTTCCATTTCAATGTACACTTTTTTAATAC  300
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATT-AGAAACAAAATGTTTCCATTTCAATGTACACTTTTTTAATAC  273

seq1  TAAAAATTTCAAAATGATAAAACCCAGTTTTTTAAATTAAAACTAGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTTCAAAATGATAAAACCCAGTTTTTTAAATTAAAACTAGAAAA  323

seq1  GTGCTTGAGAATAAAGAGTATACATACCACAATTTTAAGAGGTCCATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGAGAATAAAGAGTATACATACCACAATTTTAAGAGGTCCATATT  373

seq1  TTTTTTCCTGAGCAGCAAGTGCATTCTTAAAAGGAGTAGGAGTTCTTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCTGAGCAGCAAGTGCATTCTTAAAAGGAGTAGGAGTTCTTGGT  423

seq1  GTGGTGCCCAGTATAGATCTTCTAATAGTAGGAGTTCTGAATCTAGTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGCCCAGTATAGATCTTCTAATAGTAGGAGTTCTGAATCTAGTCAG  473

seq1  TCATTCAGATATTTATATTATTGTCACATGTGAGGTCATAAATGTTAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCAGATATTTATATTATTGTCACATGTGAGGTCATAAATGTTAACA  523

seq1  AAAGCAAAGCCATAAAAAGCATAAGCTATATTTTTATATAGACATGATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAAGCCATAAAAAGCATAAGCTATATTTTTATATAGACATGATTT  573

seq1  GTTGTTGTTGTTTGTTTGTTTGTTTTTTGGGTTTTTTTTTTCCAAGACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTGTTTGTTTGTTTGTTTTTTGGGTTTTTTTTTTCCAAGACAG  623

seq1  GGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGA  673

seq1  CATATGATTTTTAATGCATCACACAGAGCTATCTAAAGTATGGTTGTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGATTTTTAATGCATCACACAGAGCTATCTAAAGTATGGTTGTCTA  723

seq1  GAGTCGGTTATACTCGTATAATTTTAAAGAAAAAATGACTTAGAAAAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCGGTTATACTCGTATAATTTTAAAGAAAAAATGACTTAGAAAAAAG  773

seq1  TACTAAGAATATTTTGCTTGCAATAAAATTTTTATGCTAAATTTAGCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAGAATATTTTGCTTGCAATAAAATTTTTATGCTAAATTTAGCCAG  823

seq1  TTTCCAGTATTCTACAGAAACAAGAGGATGTGACTTTAAAAACAACAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGTATTCTACAGAAACAAGAGGATGTGACTTTAAAAACAACAATT  873

seq1  ACAAACTTCTAAATCCTATAGAACTAAAGATTATGGATACACCATTCATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTTCTAAATCCTATAGAACTAAAGATTATGGATACACCATTCATT  923

seq1  TGAATAAAATGCTGACATACTTCTAACATGCTTCCAGTTTTTCCTAACAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAAATGCTGACATACTTCTAACATGCTTCCAGTTTTTCCTAACAT  973

seq1  AATTATTTAATACAGACTTACCCTACATTTTCTTTTTGATCTTTGGGGGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTAATACAGACTTACCCTACATTTTCTTTTTGATCTTTGGGGGT  1023

seq1  TGCTTCCTTCTGAAGAGGAGTTGTAATGAGAACTTTCTGCCCACAAATTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCCTTCTGAAGAGGAGTTGTAATGAGAACTTTCTGCCCACAAATTG  1073

seq1  GGGTTGATGTAAAGGAAGGGTTTTCTATATTAAGTTGTTCATTTCCAGGA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGATGTAAAGGAAGGGTTTTCTATATTAAGTTGTTCATTTCCAGGA  1123

seq1  CATGTGTTAAAAAACTAAATGAGGAAGTGAATTC  1184
      ||||||||||||||||||||||||||||||||||
seq2  CATGTGTTAAAAAACTAAATGAGGAAGTGAATTC  1157

seq1: chr1_9568034_9569129
seq2: B6Ng01-137J24.g_68_1135

seq1  GAATTCTTTATCCTTCAAGTATTTGATGCTTTTCCTAACAGTAGCCAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATCCTTCAAGTATTTGATGCTTTTCCTAACAGTAGCCAGAT  50

seq1  GTCTAGATGTGACTCACCAGAAATGTCTGGCATTCATCTTGACAATGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAGATGTGACTCACCAGAAATGTCTGGCATTCATCTTGACAATGACT  100

seq1  CTGCAAAGGAAAATGTAAAGGCCATGCATTAAGAAACAGATTTTGGAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAAGGAAAATGTAAAGGCCATGCATTAAGAAACAGATTTTGGAAGC  150

seq1  CTTTTTTTTTTTTTAATCTTGAAACTCACCATTTTGATCTTTACAATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTTTTTTAATCTTGAAACTCACCATTTTGATCTTTACAATTTG  200

seq1  ACAGCATGTAAAAAGAAGTGTTTTGTAAATTGCCCACTATTTTAAGTATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATGTAAAAAGAAGTGTTTTGTAAATTGCCCACTATTTTAAGTATG  250

seq1  AGAGCGGAAACAAGGCCAGTGTCTGTAAATCAAGCACTTTCATGTTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCGGAAACAAGGCCAGTGTCTGTAAATCAAGCACTTTCATGTTAGAA  300

seq1  GTAACAAGTGCATTTTTCTCATTTTAAATCCTATTTTTTTCTATTGATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAAGTGCATTTTTCTCATTTTAAATCCTATTTTTTTCTATTGATTT  350

seq1  TCTTTTAAAAACCATTTCTAGAGTTACAGGTTTGTTTACTTGGTTTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAAAAACCATTTCTAGAGTTACAGGTTTGTTTACTTGGTTTTCTT  400

seq1  GGCAAGGGAGGGAGAATGAAAAGAATGACATTGAAGAGTCCATATGCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGGGAGGGAGAATGAAAAGAATGACATTGAAGAGTCCATATGCTCT  450

seq1  TCTCATGCTCCGCGCATGGAGTTATGACAGACGACAATGCTTTCACTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGCTCCGCGCATGGAGTTATGACAGACGACAATGCTTTCACTTAC  500

seq1  GTCACACATCTCTAATTTACTTATGAGCTAAACACTAATTCATTCTAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACACATCTCTAATTTACTTATGAGCTAAACACTAATTCATTCTAAGT  550

seq1  TGAGCCACGTCACTGTGATTTATTGTCACATGCCACAATAAGCATGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCCACGTCACTGTGATTTATTGTCACATGCCACAATAAGCATGTTTT  600

seq1  GCTCTCTTGTCCCTTCTGCAGGAAGGGCTGTGTTGAGTTGGGCATTGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTTGTCCCTTCTGCAGGAAGGGCTGTGTTGAGTTGGGCATTGTTT  650

seq1  GTATAGTGCTGGACACAGCTGCAGGGTGTTTTTACGTGTTCAATGAAGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGTGCTGGACACAGCTGCAGGGTGTTTTTACGTGTTCAATGAAGTA  700

seq1  ATTCTGTTCTCAGAAAGCTCAGACAAGTACAGTATCAAAACAGAAAGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTTCTCAGAAAGCTCAGACAAGTACAGTATCAAAACAGAAAGTGT  750

seq1  GTGCCCAAACACTGCTTTCCTGGCCCCTGCAACCCCGAAGGAAGATTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCAAACACTGCTTTCCTGGCCCCTGCAACCCCGAAGGAAGATTAAT  800

seq1  GGTTGTTTGGATTGGAAGTTGTACCCTAATGAAGCATGTTACCCCTGGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTTTGGATTGGAAGTTGTACCCTAATGAAGCATGTTACCCCTGGGG  850

seq1  AAAGGGGTCTGAGTAGGATAACTGTTCACCTCCAGGTCAACACTGCACAG  900
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAAGGGGTCTGAGTAGGATAACTGTTCACCTCCAGGTC-ACACTGCACAG  899

seq1  GCTATGATTCCTGATGCCTGCAACCCCAACCCAGACAGCTGCCATTAAGT  950
      |||||||||||||||| |||||||||  | ||||||||||||||||||||
seq2  GCTATGATTCCTGATG-CTGCAACCC--AACCAGACAGCTGCCATTAAGT  946

seq1  GCCTGGTCCTCTGGGAGCCATTGGCACACAAGGCCATTCCCATCAAAATG  1000
      | ||||| |||| |||||   |||||||||    |||||||||| |||||
seq2  G-CTGGT-CTCT-GGAGC--ATGGCACACA---GCATTCCCATC-AAATG  987

seq1  GCCTGGGGAAGAAGGTCTCCTAAGCACAGCCACAGTGAATGGAGGGGAAT  1050
      ||   |||||||| |||| |||||||||| |||||||||||||||     
seq2  GC--TGGGAAGAA-GTCT-CTAAGCACAG-CACAGTGAATGGAGG----A  1028

seq1  TAGGTCTTGAGGCCCCAGCTGAATTGATGGCAGCTGCTTTGGGAGG  1096
      |||||||||||  |||||||||| |||| ||| |||| ||||||||
seq2  TAGGTCTTGAG--CCCAGCTGAA-TGAT-GCA-CTGC-TTGGGAGG  1068