BAC Information

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BAC

Clone NameB6Ng01-137N19
Chromosome1 (Build37)
Map Location 133,520,357 - 133,647,663
singlet/doubletdoublet
Overlap geneLOC667238, Ctse, 5430435G22Rik, Slc26a9
Upstream geneZp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19, Il10, Mapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, Srgap2, LOC100042826, LOC100042821, 2700049P18Rik, Avpr1b
Downstream gene4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137N19.bB6Ng01-137N19.g
ACCDH937267DH937268
length1,1191,118
definitionDH937267|Mus musculus domesticus DNA, BAC clone: B6Ng01-137N19, 5' end.DH937268|Mus musculus domesticus DNA, BAC clone: B6Ng01-137N19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,520,357 - 133,521,497)(133,646,515 - 133,647,663)
sequence
gaattctttcaggctaccttcaaaagccaggcctgagataacaatcaaca
ggccaccctttgattgctaaccactcagacctctcacccttgccccaatt
cttcctctagttaaacctgctctgtctgggctctgaaaataacctgaaat
gtttactttgcaatgacctaaaatgatcattttgattaaaatccactcct
gcctttaacccttttgttcgttcgtttgcttgctttgctttctttggggt
ctggtggctgaaccccgaaaattggaacccacctctctagctagaccttt
gacccaagatttgggtcacaacttatagaaacctccatgctgacatgatg
tattttatatcatctatgactttgctctcaatacaaactgaggttcccta
aggcactgggtctcattcttctctgtagtccagctcattcccagtaggct
caagacagatctatgtgtggcctggatcagtaagtataaattacagggac
ccaggatggtgaggtaacctcagccaagactgacaacctgagctcagtcc
cttggactcacatgataaaaggaaagaatggactcctgcctgcaagatgc
cctttggccgccaaaatcaagttgtggcatgtacacacacacacacacac
acacacacacacacacacatttagactgcctggttacatattcatggcat
atgcacacatctcttaaccccttactttgaatgcaagcaatggtccgaga
tgaggagaaggtaattggttctcaaaagggctttcccagctcctgcctgg
aggccaccagggtccttctgcattccccctgtctaagcctgtgagtgttg
tgctttaaactgacaggctccagctccaggctaggaggcagaaattagat
atcaatcctgtgacatcaacaagaagctagcttgacagcttatcgtcctg
tggaggggtttcctgaccctctcactcatctcaacacttggctcagagac
agcagctctctctcagctcagctcccagtcacagcattcccagtgtgtgg
gacagcaagctactctcgcaggaggatctcttatttttaatggattttaa
ttttaagaactaggatttt
gaattctttgaaccagatggaagaagggctatgcaagagagaatgaggcg
tgggaagatggggtaacctttgacacatgacacacaaggcacggggcacg
gaggagaagctcacatgcccatttccactccatgttgtagtacatccaac
cacaggtcatttgaggacccaagagaggtgtgggaggactaggacttcag
ggaacccagggcagggggtagagacaccttacaacgctctgaaacagcta
gcccttctagttcccctctccatcctccctaagggtctaatcttcagggt
tcagaatctcccctcccccagggctttcctaaccccctgggggctggtcc
aggagccacattacctgaaagtgttgcgaagcttctctcccaccgggtag
gcacggtccttcttctcaaactcatcatcgaagagggagagggagtacgc
agctctgtctaccacgtagcggggcctgggctggttcatgtctgggacat
tgacaagctttgggagaagcagagtgtggaaaggtgaggggcatcccttc
tcagggccagctggggcctcctctctccggtcctcactgcaacagagatt
tattcccgtcttcccgcccctatttagcaaggtgcctcccttcctctgtc
aagtctttccgccagactcacttctttcgatggccttccttctcaggtac
tgatgatacacacactcgccctggctgttttgcttggcacccagcacgtg
gctggcactccacacctgtgacatcactgtcactcccgctgaacaccagg
cagagagaaggtgggagtacaaggacaaaagtcacagctggtttccaata
cgttacccctattcccctcagcccaggatggctccacagactgcttctgc
cccaggcctctgtttccctgccagaaggctcgtatcattcagccagttag
ctagaacaatgggacacagcctgcctagagcaggggatggccaatgtgac
ctcagagacctctgtgatagactgtctgctacgacttcaccacagtttcc
agaggacatggtgtgctggagtctgcatggtcgcttggctcctcccagct
cctgtgccagccttctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_133520357_133521497
seq2: B6Ng01-137N19.b_47_1165

seq1  GAATTCTTTCAGGCTACCTTCAAAAGCCAGGCCTGAGATAACAATCAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAGGCTACCTTCAAAAGCCAGGCCTGAGATAACAATCAACA  50

seq1  GGCCACCCTTTGATTGCTAACCACTCAGACCTCTCACCCTTGCCCCAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACCCTTTGATTGCTAACCACTCAGACCTCTCACCCTTGCCCCAATT  100

seq1  CTTCCTCTAGTTAAACCTGCTCTGTCTGGGCTCTGAAAATAACCTGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTAGTTAAACCTGCTCTGTCTGGGCTCTGAAAATAACCTGAAAT  150

seq1  GTTTACTTTGCAATGACCTAAAATGATCATTTTGATTAAAATCCACTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACTTTGCAATGACCTAAAATGATCATTTTGATTAAAATCCACTCCT  200

seq1  GCCTTTAACCCTTTTGTTCGTTCGTTTGCTTGCTTTGCTTTCTTTGGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAACCCTTTTGTTCGTTCGTTTGCTTGCTTTGCTTTCTTTGGGGT  250

seq1  CTGGTGGCTGAACCCCGAAAATTGGAACCCACCTCTCTAGCTAGACCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGCTGAACCCCGAAAATTGGAACCCACCTCTCTAGCTAGACCTTT  300

seq1  GACCCAAGATTTGGGTCACAACTTATAGAAACCTCCATGCTGACATGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAAGATTTGGGTCACAACTTATAGAAACCTCCATGCTGACATGATG  350

seq1  TATTTTATATCATCTATGACTTTGCTCTCAATACAAACTGAGGTTCCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATATCATCTATGACTTTGCTCTCAATACAAACTGAGGTTCCCTA  400

seq1  AGGCACTGGGTCTCATTCTTCTCTGTAGTCCAGCTCATTCCCAGTAGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTGGGTCTCATTCTTCTCTGTAGTCCAGCTCATTCCCAGTAGGCT  450

seq1  CAAGACAGATCTATGTGTGGCCTGGATCAGTAAGTATAAATTACAGGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACAGATCTATGTGTGGCCTGGATCAGTAAGTATAAATTACAGGGAC  500

seq1  CCAGGATGGTGAGGTAACCTCAGCCAAGACTGACAACCTGAGCTCAGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATGGTGAGGTAACCTCAGCCAAGACTGACAACCTGAGCTCAGTCC  550

seq1  CTTGGACTCACATGATAAAAGGAAAGAATGGACTCCTGCCTGCAAGATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGACTCACATGATAAAAGGAAAGAATGGACTCCTGCCTGCAAGATGC  600

seq1  CCTTTGGCCGCCAAAATCAAGTTGTGGCATGTACACACACACACACACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGCCGCCAAAATCAAGTTGTGGCATGTACACACACACACACACAC  650

seq1  ACACACACACACACACACATTTAGACTGCCTGGTTACATATTCATGGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACATTTAGACTGCCTGGTTACATATTCATGGCAT  700

seq1  ATGCACACATCTCTTAACCCCTTACTTTGAATGCAAGCAATGGTCCGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACACATCTCTTAACCCCTTACTTTGAATGCAAGCAATGGTCCGAGA  750

seq1  TGAGGAGAAGGTAATTGGTTCTCAAAAGGGCTTTCCCAGCTCCTGCCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGAAGGTAATTGGTTCTCAAAAGGGCTTTCCCAGCTCCTGCCTGG  800

seq1  AGGCCACCAGGGTCCTTCTGCATTCCCCCTGTCTAAGCCTGTGAGTGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCACCAGGGTCCTTCTGCATTCCCCCTGTCTAAGCCTGTGAGTGTTG  850

seq1  TGCTTTAAACTGACAGGCTCCAGCTCCAGGCTAGGAGGCAGAAATTAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAAACTGACAGGCTCCAGCTCCAGGCTAGGAGGCAGAAATTAGAT  900

seq1  ATCAATCCTGTGACATCAACAAGAAGCTAGCTTTGACAGCTTATCGTCCT  950
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATCAATCCTGTGACATCAACAAGAAGCTAGC-TTGACAGCTTATCGTCCT  949

seq1  GTGGAGGGGTTTCCTGACCCCTCTCCACTCATCTCAACACTTGGCTCAGA  1000
      ||||||||||||||||| |||||| |||||||||||||||||||||||| 
seq2  GTGGAGGGGTTTCCTGA-CCCTCT-CACTCATCTCAACACTTGGCTCAG-  996

seq1  AGACAGCAGCCCCTCT-TCTCAGCCTCAGGCTCCCCAGTCACAGCATTCC  1049
      |||||||||   |||| |||||| |||| ||| ||||||||||||||| |
seq2  AGACAGCAG---CTCTCTCTCAG-CTCA-GCT-CCCAGTCACAGCATT-C  1039

seq1  CCAGTGTGTGGGACAGCAAAGCTACTCTCGGCAGGAGGGTTCTCTTTATT  1099
      ||||||||||||||||| ||||||||||| |||||| || ||||||  ||
seq2  CCAGTGTGTGGGACAGC-AAGCTACTCTC-GCAGGA-GGATCTCTTATTT  1086

seq1  TTCTAAATGGATATTTTATATTTTAAGAAACTAAAGGATTTT  1141
      ||   |||||  |||||| |||||||| ||||  ||||||||
seq2  TT---AATGG--ATTTTA-ATTTTAAG-AACT--AGGATTTT  1119

seq1: chr1_133646515_133647663
seq2: B6Ng01-137N19.g_71_1188 (reverse)

seq1  GGAG-AGGCTGGGCACAGGAAGCTGTGGGAGAGAGCCAAAGCCGACCATG  49
      |||| ||||| |||||||| |||  |||||| |||||||   ||||||||
seq2  GGAGAAGGCT-GGCACAGG-AGC--TGGGAG-GAGCCAA--GCGACCATG  43

seq1  CAGACTTCCCCAAGCACACCATTGTCCTTCCTGGGGAAACCTGTTGGTGA  99
      ||||||    | ||||||||| ||||||  ||||   || ||| ||||||
seq2  CAGACT----CCAGCACACCA-TGTCCT--CTGG---AAACTG-TGGTGA  82

seq1  AGTCGTAGGCAGACAGTCTTATCCAACAGAGGTCCTCCTGAGGTCACATT  149
      ||||||| |||||||||| ||||  |||||||||   |||||||||||||
seq2  AGTCGTA-GCAGACAGTC-TATC--ACAGAGGTC--TCTGAGGTCACATT  126

seq1  GGCCATCCCCCTGCCTCTAGGCAGGCTGTTGTCCCATTTGTTCTAAGCTA  199
      |||||| |||||| |||||||||||||| ||||||| ||||||| |||||
seq2  GGCCAT-CCCCTG-CTCTAGGCAGGCTG-TGTCCCA-TTGTTCT-AGCTA  171

seq1  ACTGGCTGAATGATACGAGCCCTTCTGGCAGGGAAACAGAGGCCTGGGGG  249
      ||||||||||||||||||| ||||||||||||||||||||||||||||| 
seq2  ACTGGCTGAATGATACGAG-CCTTCTGGCAGGGAAACAGAGGCCTGGGG-  219

seq1  CAAGAAGCAGTCTGTGGAGCCATCCTGGGCTGAGGGGAATAGGGGTAACG  299
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CAGAAGCAGTCTGTGGAGCCATCCTGGGCTGAGGGGAATAGGGGTAACG  268

seq1  TATTGGAAACCAGCTGTGACTTTTGTCCTTGTACTCCCACCTTCTCTCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGAAACCAGCTGTGACTTTTGTCCTTGTACTCCCACCTTCTCTCTG  318

seq1  CCTGGTGTTCAGCGGGAGTGACAGTGATGTCACAGGTGTGGAGTGCCAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGTTCAGCGGGAGTGACAGTGATGTCACAGGTGTGGAGTGCCAGC  368

seq1  CACGTGCTGGGTGCCAAGCAAAACAGCCAGGGCGAGTGTGTGTATCATCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGCTGGGTGCCAAGCAAAACAGCCAGGGCGAGTGTGTGTATCATCA  418

seq1  GTACCTGAGAAGGAAGGCCATCGAAAGAAGTGAGTCTGGCGGAAAGACTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTGAGAAGGAAGGCCATCGAAAGAAGTGAGTCTGGCGGAAAGACTT  468

seq1  GACAGAGGAAGGGAGGCACCTTGCTAAATAGGGGCGGGAAGACGGGAATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGGAAGGGAGGCACCTTGCTAAATAGGGGCGGGAAGACGGGAATA  518

seq1  AATCTCTGTTGCAGTGAGGACCGGAGAGAGGAGGCCCCAGCTGGCCCTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTGTTGCAGTGAGGACCGGAGAGAGGAGGCCCCAGCTGGCCCTGA  568

seq1  GAAGGGATGCCCCTCACCTTTCCACACTCTGCTTCTCCCAAAGCTTGTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGATGCCCCTCACCTTTCCACACTCTGCTTCTCCCAAAGCTTGTCA  618

seq1  ATGTCCCAGACATGAACCAGCCCAGGCCCCGCTACGTGGTAGACAGAGCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCCAGACATGAACCAGCCCAGGCCCCGCTACGTGGTAGACAGAGCT  668

seq1  GCGTACTCCCTCTCCCTCTTCGATGATGAGTTTGAGAAGAAGGACCGTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTACTCCCTCTCCCTCTTCGATGATGAGTTTGAGAAGAAGGACCGTGC  718

seq1  CTACCCGGTGGGAGAGAAGCTTCGCAACACTTTCAGGTAATGTGGCTCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCGGTGGGAGAGAAGCTTCGCAACACTTTCAGGTAATGTGGCTCCT  768

seq1  GGACCAGCCCCCAGGGGGTTAGGAAAGCCCTGGGGGAGGGGAGATTCTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGCCCCCAGGGGGTTAGGAAAGCCCTGGGGGAGGGGAGATTCTGA  818

seq1  ACCCTGAAGATTAGACCCTTAGGGAGGATGGAGAGGGGAACTAGAAGGGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGAAGATTAGACCCTTAGGGAGGATGGAGAGGGGAACTAGAAGGGC  868

seq1  TAGCTGTTTCAGAGCGTTGTAAGGTGTCTCTACCCCCTGCCCTGGGTTCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTTTCAGAGCGTTGTAAGGTGTCTCTACCCCCTGCCCTGGGTTCC  918

seq1  CTGAAGTCCTAGTCCTCCCACACCTCTCTTGGGTCCTCAAATGACCTGTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGTCCTAGTCCTCCCACACCTCTCTTGGGTCCTCAAATGACCTGTG  968

seq1  GTTGGATGTACTACAACATGGAGTGGAAATGGGCATGTGAGCTTCTCCTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGATGTACTACAACATGGAGTGGAAATGGGCATGTGAGCTTCTCCTC  1018

seq1  CGTGCCCCGTGCCTTGTGTGTCATGTGTCAAAGGTTACCCCATCTTCCCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCCCCGTGCCTTGTGTGTCATGTGTCAAAGGTTACCCCATCTTCCCA  1068

seq1  CGCCTCATTCTCTCTTGCATAGCCCTTCTTCCATCTGGTTCAAAGAATTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTCATTCTCTCTTGCATAGCCCTTCTTCCATCTGGTTCAAAGAATTC  1118