BAC Information

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BAC

Clone NameB6Ng01-137O05
Chromosome1 (Build37)
Map Location 105,183,100 - 105,321,300
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041056, LOC100041067
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-137O05.bB6Ng01-137O05.g
ACCDH937286DH937287
length1,1681,135
definitionDH937286|Mus musculus domesticus DNA, BAC clone: B6Ng01-137O05, 5' end.DH937287|Mus musculus domesticus DNA, BAC clone: B6Ng01-137O05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,320,109 - 105,321,300)(105,183,100 - 105,184,244)
sequence
gaattctgctaacctacacataattcctttattggatctttctgaattgt
atggacaggggtaaatcccctgggcatttctcctttttcatggcagctct
tttccttacttttttccagttttcctactgaggaagtagagttaagatgg
cctaaacattttcatggaacaagtttagacttttatttaaattgtgttta
tgctgtcacaatctatacaggtatatatttctttacttctgtacagcaat
cttaggaataacatagctaatatgttctattaaagtgaaaaaggcagttg
gaaagttacaggaggagctacatccttgcagcagtttctggatactatat
ccatactcatgcctcaaaactgcataacaagaagggagcaaagaacttac
tcactattcagtaattcaatatcagcagctactgagactggatgaccaat
gaagtcagaaagttacttatggtgtggacattaaactaacaaataaataa
ctctgcttgcttgttaaatgccacctaaacaatcaggctagaagggtctc
ccttataaacccattacttaaaggaatgatctaacactttttttgtcgtc
tctttctcacacatacccttatctcctctaaagtcataatgcctaccaat
gttgggaaaggacaaatattaaagaggaacaccatagagctaaagactaa
agggatatggcaagaccacctgcctgagaaagtaaagagttaagattaga
aattggattacaaacatagaatgtgcatgtgtgcacatgtgtctctttct
ttttttacagtggtgagctctgtatctccagtggtccttttcacaatgac
agatgttactggactataacagcacagctacctgatctcctgagctgtga
caaggagatcagtgctcttggtggacatgtgtgtgttccaaaagcagtgg
caaatgagagaaagaatgcttaaattaaaagacagagagagagagattat
tctcttctcttagaaagggaactctacaatgaaaaagatcagtgacctgc
agcatctcggatgaagtattcccatttgcacttactggctgtgtttgcaa
tcaatgtcattcgagaactgtcagtttctggtttccctttctctgactga
ctgaatgttgactgcttg
gaattcaaggtcatcttttgttatgtaatgagcttgaagtcaacttgagc
tacatgccatccaatcttactaaaaataaaagatatttatattttctgtc
caataagaatccatataacactcaatcctttctacaaactatacccctca
gcactattgcgagtcagacactgtgtattcgatccttatctgggttttca
aacatattattttactgaggactattagtgaccatataaaattttatcag
cagcagcaccaccaccaccaccacctttattcccaccaccactaccatca
ccaccaccatcatgatcatcatcgataaaataataagttgtgaggtggct
ggcctatttttatagtttctaagttcaggagaccaattacaattctgtct
tctttgaaactttgcatgcaatttatcattcaagcaaaacagagaaagaa
aaaaggcttcagaagagaaagaaatttgcataaagaaatctcagttatac
aaagaacagattcacttgcttctaataccaacttgtatgtaaccttttac
catccattctgctataaaagtaacaaagtgcattcctcttctcctgagct
ctgggacatctagacagggcaatctgatgggtctgtcattcacatatgga
aagttgctgctgagtgttggatctggcctcagccagccttgtgtttcata
tctcagataaatacatgtttcacccatggctgtttcacttataaagttgg
tgagattcatggacaggtgtcttgaagagtagagtcagccaaatggaaat
gtttcatatttattatttagattttaaaatttgcagcattctctatgcct
ctttctgattcctggaagaccatcaacttattggcccacaggtaagagaa
gaaaatatgttgctctattttaattaggacgtggaagaaagatttatata
taccgtgtattactctcattctttttatttagtggactaacttcagaaac
ttcaacaaataaagaccgaaactcagtctcctctacctccagttcaggcc
tttgggatctttgcagtcatgatgagccattataacctctgttgttctcc
ttattgcctttagaatacttaaatagtggagagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_105320109_105321300
seq2: B6Ng01-137O05.b_47_1214 (reverse)

seq1  CAAGCAGTCATACCATACCAGTCAGTCAAAGGAGAAGGGATACCCAGAAA  50
      |||||||||  | |||  ||||||||||   ||||| ||  | |||| ||
seq2  CAAGCAGTC--AACAT-TCAGTCAGTCA---GAGAAAGGGAAACCAG-AA  43

seq1  ACTTGGACAGTTCCTTCAGAAATGACATTGATTTGCAAAACACAGCCAGT  100
      |||  ||||||||  ||   ||||||||||| |||| |||||||||||||
seq2  ACT--GACAGTTC--TC--GAATGACATTGA-TTGC-AAACACAGCCAGT  85

seq1  AAGTGCAAATGGGAATACTTCATCTGAGATGCTGCAGGGTCACCTGATCT  150
      |||||||||||||||||||||||| ||||||||||| ||||| |||||||
seq2  AAGTGCAAATGGGAATACTTCATCCGAGATGCTGCA-GGTCA-CTGATCT  133

seq1  TTTTCATTGTAGAGTTTCCCTTTCTAAGAGAAGAGAATAATTCTCTTCTC  200
      |||||||||||||| ||||||||||||||||||||||||| |||| ||||
seq2  TTTTCATTGTAGAG-TTCCCTTTCTAAGAGAAGAGAATAA-TCTC-TCTC  180

seq1  TCTTCTGTCTTTTAATTTAAGCATTCCTTTTCTCTCATTTGCCACTGCTT  250
      || |||||||||||||||||||||||  ||||||||||||||||||||||
seq2  TC-TCTGTCTTTTAATTTAAGCATTC--TTTCTCTCATTTGCCACTGCTT  227

seq1  TTGGAACACACACATGTCCACCAAGAGCACTGATCTCCTTGTCACAGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACACACACATGTCCACCAAGAGCACTGATCTCCTTGTCACAGCTC  277

seq1  AGGAGATCAGGTAGCTGTGCCTGTTATAGTCCAGTAACATCTGTCATTGT  350
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGGAGATCAGGTAGCTGTG-CTGTTATAGTCCAGTAACATCTGTCATTGT  326

seq1  GAAAAGGACCACTGGAGATACAGAGCTCACCACTGTAAAAAAAGAAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGACCACTGGAGATACAGAGCTCACCACTGTAAAAAAAGAAAGAG  376

seq1  ACACATGTGCACACATGCACATTCTATGTTTGTAATCCAATTTCTAATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGTGCACACATGCACATTCTATGTTTGTAATCCAATTTCTAATCT  426

seq1  TAACTCTTTACTTTCTCAGGCAGGTGGTCTTGCCATATCCCTTTAGTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTTTACTTTCTCAGGCAGGTGGTCTTGCCATATCCCTTTAGTCTT  476

seq1  TAGCTCTATGGTGTTCCTCTTTAATATTTGTCCTTTCCCAACATTGGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTATGGTGTTCCTCTTTAATATTTGTCCTTTCCCAACATTGGTAG  526

seq1  GCATTATGACTTTAGAGGAGATAAGGGTATGTGTGAGAAAGAGACGACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTATGACTTTAGAGGAGATAAGGGTATGTGTGAGAAAGAGACGACAA  576

seq1  AAAAAGTGTTAGATCATTCCTTTAAGTAATGGGTTTATAAGGGAGACCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTGTTAGATCATTCCTTTAAGTAATGGGTTTATAAGGGAGACCCT  626

seq1  TCTAGCCTGATTGTTTAGGTGGCATTTAACAAGCAAGCAGAGTTATTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCCTGATTGTTTAGGTGGCATTTAACAAGCAAGCAGAGTTATTTAT  676

seq1  TTGTTAGTTTAATGTCCACACCATAAGTAACTTTCTGACTTCATTGGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAGTTTAATGTCCACACCATAAGTAACTTTCTGACTTCATTGGTCA  726

seq1  TCCAGTCTCAGTAGCTGCTGATATTGAATTACTGAATAGTGAGTAAGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTCTCAGTAGCTGCTGATATTGAATTACTGAATAGTGAGTAAGTTC  776

seq1  TTTGCTCCCTTCTTGTTATGCAGTTTTGAGGCATGAGTATGGATATAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCCCTTCTTGTTATGCAGTTTTGAGGCATGAGTATGGATATAGTA  826

seq1  TCCAGAAACTGCTGCAAGGATGTAGCTCCTCCTGTAACTTTCCAACTGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAAACTGCTGCAAGGATGTAGCTCCTCCTGTAACTTTCCAACTGCC  876

seq1  TTTTTCACTTTAATAGAACATATTAGCTATGTTATTCCTAAGATTGCTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCACTTTAATAGAACATATTAGCTATGTTATTCCTAAGATTGCTGT  926

seq1  ACAGAAGTAAAGAAATATATACCTGTATAGATTGTGACAGCATAAACACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGTAAAGAAATATATACCTGTATAGATTGTGACAGCATAAACACA  976

seq1  ATTTAAATAAAAGTCTAAACTTGTTCCATGAAAATGTTTAGGCCATCTTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATAAAAGTCTAAACTTGTTCCATGAAAATGTTTAGGCCATCTTA  1026

seq1  ACTCTACTTCCTCAGTAGGAAAACTGGAAAAAAGTAAGGAAAAGAGCTGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACTTCCTCAGTAGGAAAACTGGAAAAAAGTAAGGAAAAGAGCTGC  1076

seq1  CATGAAAAAGGAGAAATGCCCAGGGGATTTACCCCTGTCCATACAATTCA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAAAGGAGAAATGCCCAGGGGATTTACCCCTGTCCATACAATTCA  1126

seq1  GAAAGATCCAATAAAGGAATTATGTGTAGGTTAGCAGAATTC  1192
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATCCAATAAAGGAATTATGTGTAGGTTAGCAGAATTC  1168

seq1: chr1_105183100_105184244
seq2: B6Ng01-137O05.g_67_1201

seq1  GAATTCAAGGTCATCTTTTGTTATGTAATGAGCTTGAAGTCAACTTGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGTCATCTTTTGTTATGTAATGAGCTTGAAGTCAACTTGAGC  50

seq1  TACATGCCATCCAATCTTACTAAAAATAAAAGATATTTATATTTTCTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGCCATCCAATCTTACTAAAAATAAAAGATATTTATATTTTCTGTC  100

seq1  CAATAAGAATCCATATAACACTCAATCCTTTCTACAAACTATACCCCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAGAATCCATATAACACTCAATCCTTTCTACAAACTATACCCCTCA  150

seq1  GCACTATTGCGAGTCAGACACTGTGTATTCGATCCTTATCTGGGTTTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTATTGCGAGTCAGACACTGTGTATTCGATCCTTATCTGGGTTTTCA  200

seq1  AACATATTATTTTACTGAGGACTATTAGTGACCATATAAAATTTTATCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATTATTTTACTGAGGACTATTAGTGACCATATAAAATTTTATCAG  250

seq1  CAGCAGCACCACCACCACCACCACCTTTATTCCCACCACCACTACCATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCACCACCACCACCACCACCTTTATTCCCACCACCACTACCATCA  300

seq1  CCACCACCATCATGATCATCATCGATAAAATAATAAGTTGTGAGGTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACCATCATGATCATCATCGATAAAATAATAAGTTGTGAGGTGGCT  350

seq1  GGCCTATTTTTATAGTTTCTAAGTTCAGGAGACCAATTACAATTCTGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTATTTTTATAGTTTCTAAGTTCAGGAGACCAATTACAATTCTGTCT  400

seq1  TCTTTGAAACTTTGCATGCAATTTATCATTCAAGCAAAACAGAGAAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAAACTTTGCATGCAATTTATCATTCAAGCAAAACAGAGAAAGAA  450

seq1  AAAAGGCTTCAGAAGAGAAAGAAATTTGCATAAAGAAATCTCAGTTATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCTTCAGAAGAGAAAGAAATTTGCATAAAGAAATCTCAGTTATAC  500

seq1  AAAGAACAGATTCACTTGCTTCTAATACCAACTTGTATGTAACCTTTTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACAGATTCACTTGCTTCTAATACCAACTTGTATGTAACCTTTTAC  550

seq1  CATCCATTCTGCTATAAAAGTAACAAAGTGCATTCCTCTTCTCCTGAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATTCTGCTATAAAAGTAACAAAGTGCATTCCTCTTCTCCTGAGCT  600

seq1  CTGGGACATCTAGACAGGGCAATCTGATGGGTCTGTCATTCACATATGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACATCTAGACAGGGCAATCTGATGGGTCTGTCATTCACATATGGA  650

seq1  AAGTTGCTGCTGAGTGTTGGATCTGGCCTCAGCCAGCCTTGTGTTTCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGCTGCTGAGTGTTGGATCTGGCCTCAGCCAGCCTTGTGTTTCATA  700

seq1  TCTCAGATAAATACATGTTTCACCCATGGCTGTTTCACTTATAAAGTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGATAAATACATGTTTCACCCATGGCTGTTTCACTTATAAAGTTGG  750

seq1  TGAGATTCATGGACAGGTGTCTTGAAGAGTAGAGTCAGCCAAATGGAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTCATGGACAGGTGTCTTGAAGAGTAGAGTCAGCCAAATGGAAAT  800

seq1  GTTTCATATTTATTATTTAGATTTTAAAATTTGCAGCATTCTCTATGCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATATTTATTATTTAGATTTTAAAATTTGCAGCATTCTCTATGCCT  850

seq1  CTTTCTGATTCCTGGAAGACCATCAACTTATTGGCCCACAGGTAAGAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGATTCCTGGAAGACCATCAACTTATTGGCCCACAGGTAAGAGAA  900

seq1  GAAAAATATGTTGCTCTATTTTAATTAGGAACGTGGAAGAAAGATTTTAT  950
      | ||||||||||||||||||||||||||| |||||||||||||| |||||
seq2  G-AAAATATGTTGCTCTATTTTAATTAGG-ACGTGGAAGAAAGA-TTTAT  947

seq1  ATATACCGTGTATTACTCTCATTCTTTTTTAATTTAGTGGACTAACTTCA  1000
      |||||||||||||||||||||||||||||  |||||||||||||||||||
seq2  ATATACCGTGTATTACTCTCATTCTTTTT--ATTTAGTGGACTAACTTCA  995

seq1  GAAACTTCAACAAATAAAGGACCGAAACTCCAGTTCTCTCTTACTCCAGT  1050
      |||||||||||||||||| |||||||||| ||||   ||||  |||||||
seq2  GAAACTTCAACAAATAAA-GACCGAAACT-CAGTCTCCTCTACCTCCAGT  1043

seq1  TCAAGCCTTTGGAATCTTTGCAGTCATTGATGAGCCAATTATAA-CTCTG  1099
      ||| |||||||| ||||||||||||| ||||||||| ||||||| |||||
seq2  TCAGGCCTTTGGGATCTTTGCAGTCA-TGATGAGCC-ATTATAACCTCTG  1091

seq1  TCTGTTTCTCCTTATGTCTTTTTAAGATACTAAAATAGTGGA-AGTT  1145
      | || |||||||||| |   ||||  ||||| |||||||||| ||||
seq2  T-TG-TTCTCCTTAT-TGCCTTTAGAATACTTAAATAGTGGAGAGTT  1135