BAC Information

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BAC

Clone NameB6Ng01-138C11
Chromosome1 (Build37)
Map Location 37,324,545 - 37,518,157
singlet/doubletdoublet
Overlap geneInpp4a, 6330578E17Rik, Unc50, Mgat4a
Upstream geneLincr, Arid5a, 4632411B12Rik, 4930533C12Rik, Lman2l, Cnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, BC050210, EG623414, Cox5b, Actr1b, 4933424G06Rik, Zap70, Tmem131, EG241053, A230074B11Rik, 4921511C04Rik, Cnga3
Downstream gene2010300C02Rik, Tsga10, EG623661, Mitd1, Mrpl30, Gm776, 2300002O18Rik, Txndc9, EG666434, Eif5b, Rev1, EG329123, Aff3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138C11.bB6Ng01-138C11.g
ACCDH937490DH937491
length1,1031,054
definitionDH937490|Mus musculus domesticus DNA, BAC clone: B6Ng01-138C11, 5' end.DH937491|Mus musculus domesticus DNA, BAC clone: B6Ng01-138C11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,517,049 - 37,518,157)(37,324,545 - 37,325,603)
sequence
gaattcttcctgtgttgttttcttgggagactgagaacaatcagttaaat
ctttaatgttactcagaatttttcagtgaagttctctggtcctggacttg
ctactctgcttgcaaggaagtcacagagggtttatgttggtatcatcatc
ctcgacagtgtcttatgtagcccaggctggccctgagcttagcagatagc
caaggatgatccagaacccacatcctgaatgttggcattgtgggcattga
ctgccacacagctttatgtggtgctggggataaaacccagagtttcatgc
ttgtcagacaagcattctaccaaccaagcaacatcccagaccttcaagaa
gttttttgtttgttcgttttgcttttctttttttctgaagactgtagctg
tcttacgacacacaccagaagagggcatcagatcccattacagatggttt
tgagccaccatgtggttgctgggaattgaactcaggacctctggaagagc
agttactgctctaagccactgagccatctctccagtccctatttgcttga
ttgttatagccacgtggaaacttatttttctgttcttcagtgtgggtgag
ttgcatctttctaggaatgtattttttcttctatggctagttcagatcac
tgtcacataacctgtggtcgcctctcataatgtttaatgcttttactctg
tgacatgagttttaatgttctctcctgtttaattttgagtcctctcttct
cctgtgtgactcataagttttgctcgcatatttacagaaacatattttgt
actactgattttttttaaatactcatgtgtttcaattttctttgtatgat
ttttgtagttacttggaacatagtagggttacagtctgactgcttaccct
caattcaagccaggaagttacctttgctttatctgctcccctaccttgta
ttgatgcaaatcatctctttataaactttttttaaagataattatgtata
ttgtaagtacactgtagctgcttcagacacaccagaagaagggcgtcgaa
ctccattacagagggtgtaaggcacttgttgggtgctgggaattgaaact
cag
gaattccaggagacatctgtgaattatttgatgtagatagagccacattc
acaaatcttaaagccagaactggagccaagtttctgtttttataagatta
aatgtatcagtctttgattttcaccatggttagtatctgtgtcgagtcgg
ggcttttttatttgtgatatatttacccacacatagactgatctaggtgt
atggtttatagaagtaacattttgttatttctgacagtttcatctcataa
caaaatacttggcctacatttttgttcttggtctgtttggagatacttac
aactttgaggtgaaagtggttgagagagagtgagaccacgggattcagag
aatgtttagttgctgtgtgacctctgtacagtgacgcaggtggctcctac
acccagagcttgacagatattcacatgtagacgtgtcctcactacccaga
tcattgtggcacaactctggcactgcagatggttccctgtggactttttc
agacactagcacactctaaagttaaccatatttttattacaatctctaga
gatttagtttcgcccatttttgaaatccatataaatgtcatcataatttt
gttttttagattgatctgtgatgttcaacgtggaggagaagtctatgaga
gtctcatggctgcatattattgagtgttgaacgtagcaggaattattcat
tctggttagggacatgtgtgcaaatttctatttctcagttattctcagtc
acgttgctgtaaacattttataaatgcctttgggggaggttcttttactg
ggcatgtctacctatagaccaaacacttggttattttaactcatgttttc
tcacaaagacattaggagtgtttgtgagcaatacctttcagaatcaggtt
cattatgacgccagaggatttttttttatccctgcttcgaagtgtctctg
agtcagtgaagaggagtccctactctactgtagggactgtggtttatctt
gggaacctggatgagaacacacaatagcttttattagagtccctagttat
cctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_37517049_37518157
seq2: B6Ng01-138C11.b_44_1146 (reverse)

seq1  CTGAG-TTCAAATCCCAGCAACCACACAGTGGCTTACAACCATCTGTAAT  49
      ||||| ||||| |||||||| |||   |||| ||||| ||| ||||||||
seq2  CTGAGTTTCAATTCCCAGCACCCAACAAGTGCCTTAC-ACCCTCTGTAAT  49

seq1  -GAGATCTGACGCCC-TCTTCTGGTGTGTCTGAAGACAGCTACAGTGTAC  97
       ||| || ||||||| ||||||||||||||||||| ||||||||||||||
seq2  GGAGTTC-GACGCCCTTCTTCTGGTGTGTCTGAAG-CAGCTACAGTGTAC  97

seq1  TTACATATAACAATAAATTAATCTTAAAAAAAAGTTTATAAAGAGATGAT  147
      ||||| |||   ||||  | ||||| ||||||||||||||||||||||||
seq2  TTACA-ATATACATAA--TTATCTTTAAAAAAAGTTTATAAAGAGATGAT  144

seq1  TTGCATCAATAACAAGGTAGGGGGAGCAGATAAAGCAAAGGTAACTTCCA  197
      |||||||||| |||||||| ||||||||||||||||||||||||||||| 
seq2  TTGCATCAAT-ACAAGGTA-GGGGAGCAGATAAAGCAAAGGTAACTTCC-  191

seq1  TGGCTTGAATTGAGGGTAAGCAGTCAGACTGTAACCCTACTATGTTCCAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGAATTGAGGGTAAGCAGTCAGACTGTAACCCTACTATGTTCCAA  241

seq1  GTAACTACAAAAATCATACAAAGAAAATTGAAACACATGAGTATTTAAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTACAAAAATCATACAAAGAAAATTGAAACACATGAGTATTTAAAA  291

seq1  AAAATCAGTAGTACAAAATATGTTTCTGTAAATATGCGAGCAAAACTTAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAGTAGTACAAAATATGTTTCTGTAAATATGCGAGCAAAACTTAT  341

seq1  GAGTCACACAGGAGAAGAGAGGACTCAAAATTAAACAGGAGAGAACATTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCACACAGGAGAAGAGAGGACTCAAAATTAAACAGGAGAGAACATTA  391

seq1  AAACTCATGTCACAGAGTAAAAGCATTAAACATTATGAGAGGCGACCACA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCATGTCACAGAGTAAAAGCATTAAACATTATGAGAGGCGACCACA  441

seq1  GGTTATGTGACAGTGATCTGAACTAGCCATAGAAGAAAAAATACATTCCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATGTGACAGTGATCTGAACTAGCCATAGAAGAAAAAATACATTCCT  491

seq1  AGAAAGATGCAACTCACCCACACTGAAGAACAGAAAAATAAGTTTCCACG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGATGCAACTCACCCACACTGAAGAACAGAAAAATAAGTTTCCACG  541

seq1  TGGCTATAACAATCAAGCAAATAGGGACTGGAGAGATGGCTCAGTGGCTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATAACAATCAAGCAAATAGGGACTGGAGAGATGGCTCAGTGGCTT  591

seq1  AGAGCAGTAACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGTAACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCA  641

seq1  CATGGTGGCTCAAAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGGCTCAAAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTG  691

seq1  TGTGTCGTAAGACAGCTACAGTCTTCAGAAAAAAAGAAAAGCAAAACGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCGTAAGACAGCTACAGTCTTCAGAAAAAAAGAAAAGCAAAACGAA  741

seq1  CAAACAAAAAACTTCTTGAAGGTCTGGGATGTTGCTTGGTTGGTAGAATG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAAAACTTCTTGAAGGTCTGGGATGTTGCTTGGTTGGTAGAATG  791

seq1  CTTGTCTGACAAGCATGAAACTCTGGGTTTTATCCCCAGCACCACATAAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTGACAAGCATGAAACTCTGGGTTTTATCCCCAGCACCACATAAA  841

seq1  GCTGTGTGGCAGTCAATGCCCACAATGCCAACATTCAGGATGTGGGTTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTGGCAGTCAATGCCCACAATGCCAACATTCAGGATGTGGGTTCT  891

seq1  GGATCATCCTTGGCTATCTGCTAAGCTCAGGGCCAGCCTGGGCTACATAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATCCTTGGCTATCTGCTAAGCTCAGGGCCAGCCTGGGCTACATAA  941

seq1  GACACTGTCGAGGATGATGATACCAACATAAACCCTCTGTGACTTCCTTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGTCGAGGATGATGATACCAACATAAACCCTCTGTGACTTCCTTG  991

seq1  CAAGCAGAGTAGCAAGTCCAGGACCAGAGAACTTCACTGAAAAATTCTGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGAGTAGCAAGTCCAGGACCAGAGAACTTCACTGAAAAATTCTGA  1041

seq1  GTAACATTAAAGATTTAACTGATTGTTCTCAGTCTCCCAAGAAAACAACA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACATTAAAGATTTAACTGATTGTTCTCAGTCTCCCAAGAAAACAACA  1091

seq1  CAGGAAGAATTC  1109
      ||||||||||||
seq2  CAGGAAGAATTC  1103

seq1: chr1_37324545_37325603
seq2: B6Ng01-138C11.g_72_1125

seq1  GAATTCCAGGAGACATCTGTGAATTATTTGATGTAGATAGAGCCACATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGAGACATCTGTGAATTATTTGATGTAGATAGAGCCACATTC  50

seq1  ACAAATCTTAAAGCCAGAACTGGAGCCAAGTTTCTGTTTTTATAAGATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCTTAAAGCCAGAACTGGAGCCAAGTTTCTGTTTTTATAAGATTA  100

seq1  AATGTATCAGTCTTTGATTTTCACCATGGTTAGTATCTGTGTCGAGTCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATCAGTCTTTGATTTTCACCATGGTTAGTATCTGTGTCGAGTCGG  150

seq1  GGCTTTTTTATTTGTGATATATTTACCCACACATAGACTGATCTAGGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTTTATTTGTGATATATTTACCCACACATAGACTGATCTAGGTGT  200

seq1  ATGGTTTATAGAAGTAACATTTTGTTATTTCTGACAGTTTCATCTCATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTATAGAAGTAACATTTTGTTATTTCTGACAGTTTCATCTCATAA  250

seq1  CAAAATACTTGGCCTACATTTTTGTTCTTGGTCTGTTTGGAGATACTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATACTTGGCCTACATTTTTGTTCTTGGTCTGTTTGGAGATACTTAC  300

seq1  AACTTTGAGGTGAAAGTGGTTGAGAGAGAGTGAGACCACGGGATTCAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGAGGTGAAAGTGGTTGAGAGAGAGTGAGACCACGGGATTCAGAG  350

seq1  AATGTTTAGTTGCTGTGTGACCTCTGTACAGTGACGCAGGTGGCTCCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTAGTTGCTGTGTGACCTCTGTACAGTGACGCAGGTGGCTCCTAC  400

seq1  ACCCAGAGCTTGACAGATATTCACATGTAGACGTGTCCTCACTACCCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAGCTTGACAGATATTCACATGTAGACGTGTCCTCACTACCCAGA  450

seq1  TCATTGTGGCACAACTCTGGCACTGCAGATGGTTCCCTGTGGACTTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGTGGCACAACTCTGGCACTGCAGATGGTTCCCTGTGGACTTTTTC  500

seq1  AGACACTAGCACACTCTAAAGTTAACCATATTTTTATTACAATCTCTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTAGCACACTCTAAAGTTAACCATATTTTTATTACAATCTCTAGA  550

seq1  GATTTAGTTTCGCCCATTTTTGAAATCCATATAAATGTCATCATAATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAGTTTCGCCCATTTTTGAAATCCATATAAATGTCATCATAATTTT  600

seq1  GTTTTTTAGATTGATCTGTGATGTTCAACGTGGAGGAGAAGTCTATGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTAGATTGATCTGTGATGTTCAACGTGGAGGAGAAGTCTATGAGA  650

seq1  GTCTCATGGCTGCATATTATTGAGTGTTGAACGTAGCAGGAATTATTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCATGGCTGCATATTATTGAGTGTTGAACGTAGCAGGAATTATTCAT  700

seq1  TCTGGTTAGGGACATGTGTGCAAATTTCTA-TTCTCAGTTATTCTCAGTC  749
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCTGGTTAGGGACATGTGTGCAAATTTCTATTTCTCAGTTATTCTCAGTC  750

seq1  ACGTTGCTGTAAACATTTTATAAATGCCTTTGGGGGAGGTCATTTTACTG  799
      ||||||||||||||||||||||||||||||||||||||||  ||||||||
seq2  ACGTTGCTGTAAACATTTTATAAATGCCTTTGGGGGAGGTTCTTTTACTG  800

seq1  GGCATGTCTACCTATAGACCAAACACTTGGTTATTTTAACTCATGTTTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTCTACCTATAGACCAAACACTTGGTTATTTTAACTCATGTTTTC  850

seq1  TCACAAAGACATTA-GAGTGTTTGTGAGCAATACCTTTCAGAATCAGGTT  898
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCACAAAGACATTAGGAGTGTTTGTGAGCAATACCTTTCAGAATCAGGTT  900

seq1  CATTATGACGCCAGAGGA-TTTTTTTTATCACTGCTTCGAAGTGTCTCTG  947
      |||||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  CATTATGACGCCAGAGGATTTTTTTTTATCCCTGCTTCGAAGTGTCTCTG  950

seq1  AGTCAGTGAAGAGGAGTCCCTACTCTACTGTAGGGACTGTGGGTTTTACT  997
      ||||||||||||||||||||||||||||||||||||||||||  |||| |
seq2  AGTCAGTGAAGAGGAGTCCCTACTCTACTGTAGGGACTGTGG--TTTA-T  997

seq1  CTGGGACACTGGGATGAGGAAACACACAAATGCTTTTATCAGAGCTCCCC  1047
      || ||  ||  |||||||  |||||||||  |||||||| |||| |||| 
seq2  CTTGGGAACCTGGATGAG--AACACACAATAGCTTTTATTAGAG-TCCC-  1043

seq1  ATAGTTATCCTG  1059
       |||||||||||
seq2  -TAGTTATCCTG  1054