BAC Information

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BAC

Clone NameB6Ng01-138D24
Chromosome1 (Build37)
Map Location 162,902,246 - 163,067,693
singlet/doubletdoublet
Overlap geneSerpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20
Upstream gene4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Rabgap1l, Gpr52, EG620750, Rc3h1
Downstream geneAnkrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650, LOC100039623, LOC269134, Fasl, AI848100, EG665109, Pigc, Dnm3, LOC100039703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138D24.bB6Ng01-138D24.g
ACCDH937563DH937564
length1,1841,043
definitionDH937563|Mus musculus domesticus DNA, BAC clone: B6Ng01-138D24, 5' end.DH937564|Mus musculus domesticus DNA, BAC clone: B6Ng01-138D24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(163,066,518 - 163,067,693)(162,902,246 - 162,903,323)
sequence
gaattccactttgccttcccaactatgatcattcttagcctgatgtccaa
gggatcaatgggaggatcacaccaaatgcagaagtgtgtctgttccaatt
atacagtcagggatggggaaatggtattggaaaactctcatgtatctagt
gaatcctctgaaaaatcagacctcaggcaacattctattgatactttgtt
ccatacagaaaatgatccacaataaataaataaaatcctgagttttcaat
aagtgagtttatttaaatgtagcaagccaaagtaaaagaattaatagcaa
gtagcaggaaaaaaaagtgctagcaggctaaaggctctgaggaaatatgc
ctagatggccatcatcttctagtgtctgcatatcacctctatgtctatgt
ctttgttcagaatccctctgtaagtcaggacagcagtcatgctacgtcag
ggcctgcctccaaacctcatcctgaggtactcaaacccaagatgtcaaca
gagagattgttgagttgtggggacacagttcagttcataataaagattgc
ttcccagagaagccaaggatctagaagactatacattgcatgggtgctgg
attaagagggacaaaatataaaattgaattggagagtttaattaatctgg
aggcattcccttgggatgtgggatctaaccacaatgcaaatattccacta
ggattgcttctgtaagtctgagaaagtgatggtttgtcagtggagtagag
gtaggtgccagggttgctatagttgtagaagaaagcatttaaagactcaa
agaattaagtattctagggctagtgtactatgcaagcagaagacgaatga
gacaaccacattctgcatggtggtccctttaccaaaatagcaaggccact
ttgagagccagaatcactgataagctcagtagtggctcttaatagaccag
ctagatgcttggagatgctgctatggggctgagtttactaaatataatgg
ggatgataggtcatggggtcatactccttgaagggaaatattctgcttgc
tcagaacttgctggttgtttctaagtcatggaggtgagaaggtgttcccg
cttggccactttgctccccaacattcatagttccctcactcaaggctcaa
atggaattactgagacatggaggtgttttggttt
gaattcttcttgaacttgacgcttgtgagaaacagttaacggtagttact
tagtacctgttcgacttaagttcagggacatcttatttttactaaatggg
attcatttgctattgtttttatgtacaaatgatggtagaatgaaatttca
atatatttttcatttgggcttttaaagaatcaagtaaagagttcaatatg
taaaatctttgtgtaaaaaccatccgtaacgatttattacatcctaattt
gttctcaagaggaagtaatgaccttgcaaattaactgcagtattacacta
ttgccctataaaaggttcaagtgtgttaaactcttaattgttaatatatg
cttatagtgttgcaaagggatgtcatccctgaagatagagctcagataca
gcgtcactgagacaacgggcagtctacactgacaccatttcatctgaaac
atatcgatgtctaccttagacagctatggcttttttttttttttttaaca
gctcagctttttaaaatttcctgctgaaatgactggctgggagtttttgg
taaattgtgctaacattctttttaacgttctcaatcagctttcctgagcc
actcacttcaaagagctggttttgttttgttttgttcaaaagatacagga
aataacatttgagattttaagattctatttctgtaattgctagaggtgtt
ttcacaagtaacagattttaattaattagtaattctagtcacactaataa
agaataggaaactgctacccccaggagcaaatgacacctttctaataagt
gttctcagtaggtaggtttcaatactacactgaataagtgggtaaagagc
ccttggaatcccattgtgataaagggacttcccttagcactggaattgtc
tagagctctggatttcagacaacactgatttccctgacttactgagcaga
tactcatttcacagaaagtagcatgtacccagtgaaactaacttagacat
actgtgtcagaaatgtgtattagaagtgacctgtggagtctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_163066518_163067693
seq2: B6Ng01-138D24.b_36_1219 (reverse)

seq1  AAACC-AAACACCTCCATG-CTCAGTTAATCTCATTTTGGAGCCTGGGGT  48
      ||||| ||||||||||||| ||||| ||||  |||||  |||||| | ||
seq2  AAACCAAAACACCTCCATGTCTCAG-TAATTCCATTT--GAGCCTTGAGT  47

seq1  GAGGGAACCTATGATGGT--GGGAGC-AAGTG--CCAGCGTG-ACA-CTT  91
      ||||||| ||||||  ||  |||||| |||||  | |||| | ||| |||
seq2  GAGGGAA-CTATGAATGTTGGGGAGCAAAGTGGCCAAGCGGGAACACCTT  96

seq1  CTCACCT-CATGACTTAGAAACAACCAGCAAG-TCTGAGCAGGCAGAATA  139
      ||||||| |||||||||||||||||||||||| |||||||| ||||||||
seq2  CTCACCTCCATGACTTAGAAACAACCAGCAAGTTCTGAGCAAGCAGAATA  146

seq1  -TTCCCTTC-AGGAGTATGACCCCATGACCTAATCATCCCCATTATAATT  187
       |||||||| ||||||||||||||||||||| ||||||||||||||| ||
seq2  TTTCCCTTCAAGGAGTATGACCCCATGACCT-ATCATCCCCATTATATTT  195

seq1  AGTAAACTCAGCCCCATAGCAGCATCTCCAAGCATCTAGCTGGTCTATTA  237
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAACTCAGCCCCATAGCAGCATCTCCAAGCATCTAGCTGGTCTATTA  245

seq1  AGAGCCACTACTGAGCTTATCAGTGATTCTGGCTCTCAAAGTGGCCTTGC  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCACTACTGAGCTTATCAGTGATTCTGGCTCTCAAAGTGGCCTTGC  295

seq1  TATTTTGGTAAAGGGACCACCATGCAGAATGTGGTTGTCTCATTCGTCTT  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGGTAAAGGGACCACCATGCAGAATGTGGTTGTCTCATTCGTCTT  345

seq1  CTGCTTGCATAGTACACTAGCCCTAGAATACTTAATTCTTTGAGTCTTTA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGCATAGTACACTAGCCCTAGAATACTTAATTCTTTGAGTCTTTA  395

seq1  AATGCTTTCTTCTACAACTATAGCAACCCTGGCACCTACCTCTACTCCAC  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTTCTTCTACAACTATAGCAACCCTGGCACCTACCTCTACTCCAC  445

seq1  TGACAAACCATCACTTTCTCAGACTTACAGAAGCAATCCTAGTGGAATAT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAACCATCACTTTCTCAGACTTACAGAAGCAATCCTAGTGGAATAT  495

seq1  TTGCATTGTGGTTAGATCCCACATCCCAAGGGAATGCCTCCAGATTAATT  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTGTGGTTAGATCCCACATCCCAAGGGAATGCCTCCAGATTAATT  545

seq1  AAACTCTCCAATTCAATTTTATATTTTGTCCCTCTTAATCCAGCACCCAT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTCCAATTCAATTTTATATTTTGTCCCTCTTAATCCAGCACCCAT  595

seq1  GCAATGTATAGTCTTCTAGATCCTTGGCTTCTCTGGGAAGCAATCTTTAT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTATAGTCTTCTAGATCCTTGGCTTCTCTGGGAAGCAATCTTTAT  645

seq1  TATGAACTGAACTGTGTCCCCACAACTCAACAATCTCTCTGTTGACATCT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAACTGAACTGTGTCCCCACAACTCAACAATCTCTCTGTTGACATCT  695

seq1  TGGGTTTGAGTACCTCAGGATGAGGTTTGGAGGCAGGCCCTGACGTAGCA  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTGAGTACCTCAGGATGAGGTTTGGAGGCAGGCCCTGACGTAGCA  745

seq1  TGACTGCTGTCCTGACTTACAGAGGGATTCTGAACAAAGACATAGACATA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGCTGTCCTGACTTACAGAGGGATTCTGAACAAAGACATAGACATA  795

seq1  GAGGTGATATGCAGACACTAGAAGATGATGGCCATCTAGGCATATTTCCT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGATATGCAGACACTAGAAGATGATGGCCATCTAGGCATATTTCCT  845

seq1  CAGAGCCTTTAGCCTGCTAGCACTTTTTTTTCCTGCTACTTGCTATTAAT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCTTTAGCCTGCTAGCACTTTTTTTTCCTGCTACTTGCTATTAAT  895

seq1  TCTTTTACTTTGGCTTGCTACATTTAAATAAACTCACTTATTGAAAACTC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTACTTTGGCTTGCTACATTTAAATAAACTCACTTATTGAAAACTC  945

seq1  AGGATTTTATTTATTTATTGTGGATCATTTTCTGTATGGAACAAAGTATC  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTTATTTATTTATTGTGGATCATTTTCTGTATGGAACAAAGTATC  995

seq1  AATAGAATGTTGCCTGAGGTCTGATTTTTCAGAGGATTCACTAGATACAT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAATGTTGCCTGAGGTCTGATTTTTCAGAGGATTCACTAGATACAT  1045

seq1  GAGAGTTTTCCAATACCATTTCCCCATCCCTGACTGTATAATTGGAACAG  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTTTCCAATACCATTTCCCCATCCCTGACTGTATAATTGGAACAG  1095

seq1  ACACACTTCTGCATTTGGTGTGATCCTCCCATTGATCCCTTGGACATCAG  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTTCTGCATTTGGTGTGATCCTCCCATTGATCCCTTGGACATCAG  1145

seq1  GCTAAGAATGATCATAGTTGGGAAGGCAAAGTGGAATTC  1176
      |||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGAATGATCATAGTTGGGAAGGCAAAGTGGAATTC  1184

seq1: chr1_162902246_162903323
seq2: B6Ng01-138D24.g_67_1109

seq1  GAATTCTTCTTGAACTTGACGCTTGTGAGAAACAGTTAACGGTAGTTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTGAACTTGACGCTTGTGAGAAACAGTTAACGGTAGTTACT  50

seq1  TAGTACCTGTTCGACTTAAGTTCAGGGACATCTTATTTTTACTAAATGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACCTGTTCGACTTAAGTTCAGGGACATCTTATTTTTACTAAATGGG  100

seq1  ATTCATTTGCTATTGTTTTTATGTACAAATGATGGTAGAATGAAATTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTGCTATTGTTTTTATGTACAAATGATGGTAGAATGAAATTTCA  150

seq1  ATATATTTTTCATTTGGGCTTTTAAAGAATCAAGTAAAGAGTTCAATATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTTTCATTTGGGCTTTTAAAGAATCAAGTAAAGAGTTCAATATG  200

seq1  TAAAATCTTTGTGTAAAAACCATCCGTAACGATTTATTACATCCTAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCTTTGTGTAAAAACCATCCGTAACGATTTATTACATCCTAATTT  250

seq1  GTTCTCAAGAGGAAGTAATGACCTTGCAAATTAACTGCAGTATTACACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCAAGAGGAAGTAATGACCTTGCAAATTAACTGCAGTATTACACTA  300

seq1  TTGCCCTATAAAAGGTTCAAGTGTGTTAAACTCTTAATTGTTAATATATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCTATAAAAGGTTCAAGTGTGTTAAACTCTTAATTGTTAATATATG  350

seq1  CTTATAGTGTTGCAAAGGGATGTCATCCCTGAAGATAGAGCTCAGATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAGTGTTGCAAAGGGATGTCATCCCTGAAGATAGAGCTCAGATACA  400

seq1  GCGTCACTGAGACAACGGGCAGTCTACACTGACACCATTTCATCTGAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCACTGAGACAACGGGCAGTCTACACTGACACCATTTCATCTGAAAC  450

seq1  ATATCGATGTCTACCTTAGACAGCTATGGCTTTTTTTTTTTTTTTTAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCGATGTCTACCTTAGACAGCTATGGCTTTTTTTTTTTTTTTTAACA  500

seq1  GCTCAGCTTTTTAAAATTTCCTGCTGAAATGACTGGCTGGGAGTTTTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCTTTTTAAAATTTCCTGCTGAAATGACTGGCTGGGAGTTTTTGG  550

seq1  TAAATTGTGCTAACATTCTTTTTAACGTTCTCAATCAGCTTTCCTGAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGTGCTAACATTCTTTTTAACGTTCTCAATCAGCTTTCCTGAGCC  600

seq1  ACTCACTTCAAAGAGCTGGTTTTGTTTTGTTTTGTTCAAAAGATACAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACTTCAAAGAGCTGGTTTTGTTTTGTTTTGTTCAAAAGATACAGGA  650

seq1  AATAACATTTGAGATTTTAAGATTCTATTTCTGTAATTGCTAGAGGTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACATTTGAGATTTTAAGATTCTATTTCTGTAATTGCTAGAGGTGTT  700

seq1  TTCACAAGTAACAGATTTTAATTAATTAGTAATTCTAGTCACACTAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAAGTAACAGATTTTAATTAATTAGTAATTCTAGTCACACTAATAA  750

seq1  AGAATAGGAAACTGCTACCCCCAGGAGCAAATGACACC-TTCTAATAAGT  799
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGAATAGGAAACTGCTACCCCCAGGAGCAAATGACACCTTTCTAATAAGT  800

seq1  GTTCTCAGTAGGTAGGTTTCAATACTACACTGAATAAGTGGGTAAAGAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCAGTAGGTAGGTTTCAATACTACACTGAATAAGTGGGTAAAGAGC  850

seq1  CCTTGGAATCCCATTGTGATAAAGGGACTTCCCTTAGCACTGGAATTGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CCTTGGAATCCCATTGTGATAAAGGGACTTCCCTTAGCACTGGAATTGT-  899

seq1  CTTAGAGCCTCTGGATTTCAGACAAACACTGAATTTCCCTGAACTTAACC  949
        ||||| ||||||||||||||| ||||||| ||||||||| |||||   
seq2  -CTAGAG-CTCTGGATTTCAGAC-AACACTG-ATTTCCCTG-ACTTA---  941

seq1  TTGAGCAGAATAACCTTCATTTTCACAAGAAAGTAAGGCATTGTAACCCA  999
       ||||||| |||    ||| |||||| ||||||||  ||| ||| |||||
seq2  CTGAGCAG-ATA---CTCA-TTTCAC-AGAAAGTA--GCA-TGT-ACCCA  981

seq1  AGGTGGAAAACTTAAACTTTAAGACAATACTGTGTCAGAAAAATGTGTAT  1049
        |||  |||||  |||||  |||| ||||||||||||  ||||||||| 
seq2  --GTG--AAACT--AACTT--AGAC-ATACTGTGTCAG--AAATGTGTA-  1019

seq1  TTAGAAGAGTGAAACCCTGTGGAGTCTGT  1078
      |||||  |||||   ||||||||||||||
seq2  TTAGA--AGTGA---CCTGTGGAGTCTGT  1043