BAC Information

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BAC

Clone NameB6Ng01-138E15
Chromosome1 (Build37)
Map Location 174,321,366 - 174,502,857
singlet/doubletdoublet
Overlap geneLOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916
Upstream geneArhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm
Downstream geneSlamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138E15.bB6Ng01-138E15.g
ACCDH937590DH937591
length1,0521,082
definitionDH937590|Mus musculus domesticus DNA, BAC clone: B6Ng01-138E15, 5' end.DH937591|Mus musculus domesticus DNA, BAC clone: B6Ng01-138E15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(174,321,366 - 174,322,429)(174,501,755 - 174,502,857)
sequence
gaattcactgtatcaccaagaattatatatgagtgcactattgctctctt
cagacacaccagaagaagacattggatcccattacagatggttgtgagcc
accatgtggttgctgggaattgaactcaggaccattgcaagagcaggcag
tgctcttacccactgagccatctctccagcctgccaagaatcatcttggc
tcctgacccacgacttacatgtaggtatgtgctccgtgccaggtttacac
atagtgatgactgaacccagggctttgtgcgtgctaggggaacactccac
ccactaagccattgctcctcacctgacctttatgattggttcttccctgt
tctgcttcatctacctcctcccaaccaccttacccaaatttgccgtctct
tcacgctttgaaaacatgtgctgctcctgtggtaaaatgcccttcttgtc
tctctcgccagttcctgtttaagggtgacctttgcaaagcatcctccggt
acagcacttttattttacagtgcaggtcatcttgtcctacagtttcagtg
cgtgactatgccttgagttctataaggactggcattctctcttactccct
tattttccaggggttttacagacccaagcaaagatgggcgagagtagtca
acgccattgagctactaaggtgctccacctactctccctggtttgttgaa
ttgagttatacaggagtacatcaagtgggaggtggggacagttgagttct
tcacagggtgtccatggtgacagctgtgcaagggaaagaaagcactttct
tactgcctgtcatttccaaatgccatcagggtctgcctagttttctaagt
tagaagtttataatcacctcctattcttctcttactaccctgccccgtct
aatcagtcactaaatctgtcggctctacctttaatgtcccagagccgctg
gcatcttgcaacggtcggtggcagttctcaggcgcaggccttcattattc
cgcactaggatcgatagctctggactgtttcgctttcattctcttgcctt
ca
gaattcactcatccgtaatcatcaggggacaggatctaacaaaaacaaat
acgaggagggatgaaaatatattggattggatcatatgaagattaccaca
gatataagaagtacagatgatttcatagaattcaacctagtaatttaaac
gtaagtcagcctaaagaagaaaaatccctcctctgctctgatcctacacc
cagctaggatcataaggatgtgcctctaatcgagcactcttttacattgc
agatctgccaggttccctagatgtgaacttgagatctgaggtttatgaga
taacaagagcatctcccaaagagctttagtcccaaattcatccagaccca
caggattgtttctccgggcccagattttgcctttgcattttcagaacaac
caagaacactcaggacctgaagtcttaatcatgggtggtactggagctgc
ctcaggaactacgaggaaggtacctcaacctcctgtgactgcaaactacc
cacagagactcctgtagcatctggggtcctacatgggacgtctggatggg
attcctgaaaggaccctctccaagcaatgtcagggacaaagtcagacaaa
atcagacacggaagaggatgcttcacctacggcaaagctcctgtttggtt
acatgctatgattggccctcaaaggtatcacacaggccagggcacatgca
ctacagcatcctttcatgggaaggatatcatgaactgctgcctccctcag
gtcagaaactggaaacagagggttcaagatgcccttgcagacatttggga
gctcactgctgactagtgcctggtgcctgcctgctggtggctgacagctg
gccagcagctggctgtgtacagcaaggttaaactagtcaggtcactaaat
gctctgtcacgctgggctggagatgtctcagacacttccaaagcttacag
ctgtttagggaagaggcagctatcaggatatcccaagttgatactatggt
ctatatgtctatttcttgctctgtagccactagtcatcctgtccttccag
tgacatcttatccctcacatactacttctgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_174321366_174322429
seq2: B6Ng01-138E15.b_45_1096

seq1  GAATTCACTGTATCACCAAGAATTATATATGAGTGCACTATTGCTCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTATCACCAAGAATTATATATGAGTGCACTATTGCTCTCTT  50

seq1  CAGACACACCAGAAGAAGACATTGGATCCCATTACAGATGGTTGTGAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACACCAGAAGAAGACATTGGATCCCATTACAGATGGTTGTGAGCC  100

seq1  ACCATGTGGTTGCTGGGAATTGAACTCAGGACCATTGCAAGAGCAGGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTGGTTGCTGGGAATTGAACTCAGGACCATTGCAAGAGCAGGCAG  150

seq1  TGCTCTTACCCACTGAGCCATCTCTCCAGCCTGCCAAGAATCATCTTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTACCCACTGAGCCATCTCTCCAGCCTGCCAAGAATCATCTTGGC  200

seq1  TCCTGACCCACGACTTACATGTAGGTATGTGCTCCGTGCCAGGTTTACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGACCCACGACTTACATGTAGGTATGTGCTCCGTGCCAGGTTTACAC  250

seq1  ATAGTGATGACTGAACCCAGGGCTTTGTGCGTGCTAGGGGAACACTCCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGATGACTGAACCCAGGGCTTTGTGCGTGCTAGGGGAACACTCCAC  300

seq1  CCACTAAGCCATTGCTCCTCACCTGACCTTTATGATTGGTTCTTCCCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAAGCCATTGCTCCTCACCTGACCTTTATGATTGGTTCTTCCCTGT  350

seq1  TCTGCTTCATCTACCTCCTCCCAACCACCTTACCCAAATTTGCCGTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTCATCTACCTCCTCCCAACCACCTTACCCAAATTTGCCGTCTCT  400

seq1  TCACGCTTTGAAAACATGTGCTGCTCCTGTGGTAAAATGCCCTTCTTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGCTTTGAAAACATGTGCTGCTCCTGTGGTAAAATGCCCTTCTTGTC  450

seq1  TCTCTCGCCAGTTCCTGTTTAAGGGTGACCTTTGCAAAGCATCCTCCGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCGCCAGTTCCTGTTTAAGGGTGACCTTTGCAAAGCATCCTCCGGT  500

seq1  ACAGCACTTTTATTTTACAGTGCAGGTCATCTTGTCCTACAGTTTCAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACTTTTATTTTACAGTGCAGGTCATCTTGTCCTACAGTTTCAGTG  550

seq1  CGTGACTATGCCTTGAGTTCTATAAGGACTGGCATTCTCTCTTACTCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGACTATGCCTTGAGTTCTATAAGGACTGGCATTCTCTCTTACTCCCT  600

seq1  TATTTTCCAGGGGTTTTACAGACCCAAGCAAAGATGGGCGAGAGTAGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCCAGGGGTTTTACAGACCCAAGCAAAGATGGGCGAGAGTAGTCA  650

seq1  ACGCCATTGAGCTACTAAGGTGCTCCACCTACTCTCCCTGGTTTGTTGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCATTGAGCTACTAAGGTGCTCCACCTACTCTCCCTGGTTTGTTGAA  700

seq1  TTGAGTTATACAGGAGTACATCAAGTGGGAGGTGGGGACAGTTGAGTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTATACAGGAGTACATCAAGTGGGAGGTGGGGACAGTTGAGTTCT  750

seq1  TCACAGGGTGTCCATGGTGACAGCTGTGCAAAGGGAAAGAAAGCACTTTC  800
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCACAGGGTGTCCATGGTGACAGCTGTGC-AAGGGAAAGAAAGCACTTTC  799

seq1  TTACTGCCTGTCATTTCCAAATGCCATCAGGGTCTGCCTAGTTTTCTAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGCCTGTCATTTCCAAATGCCATCAGGGTCTGCCTAGTTTTCTAAG  849

seq1  TTAGAAGTTTATAATCACCTCCTATTCCTTCTCTTACTACCCTGCCCCCG  900
      |||||||||||||||||||||||||| ||||||||||||||||| |||||
seq2  TTAGAAGTTTATAATCACCTCCTATT-CTTCTCTTACTACCCTG-CCCCG  897

seq1  TCTAATCAGTCACTAAATCCTGTCGGCTCTACCCTTTAATGTCCCCAGAG  950
      |||||||||||||||||| |||||||||||| |||||||||| |||||||
seq2  TCTAATCAGTCACTAAAT-CTGTCGGCTCTA-CCTTTAATGT-CCCAGAG  944

seq1  CCCGCTGGCATCTTGCCATCGCCCGTTGCCAGTTCTCCAGCGCAGGCCCT  1000
       |||||||||||||| || ||  || || ||||||||  ||||||||| |
seq2  -CCGCTGGCATCTTG-CAACGGTCGGTGGCAGTTCTCAGGCGCAGGCCTT  992

seq1  CATTATCCCGCACCTAGAATCGATAGCTCT-GACTGGTCTCGCTTTCCAT  1049
      |||||| ||||| |||| |||||||||||| |||| || ||||||| |||
seq2  CATTATTCCGCA-CTAGGATCGATAGCTCTGGACT-GTTTCGCTTT-CAT  1039

seq1  CTCTCTTGCCCTTCA  1064
       ||||||| ||||||
seq2  -TCTCTTG-CCTTCA  1052

seq1: chr1_174501755_174502857
seq2: B6Ng01-138E15.g_67_1148 (reverse)

seq1  AACAGGAAGTAGTATGGTGAGGGGATAAGATGTCCACTGGGAGGGACAGT  50
      |||| |||||||||| |||| |||||||||||| |||| ||| |||||| 
seq2  AACA-GAAGTAGTAT-GTGA-GGGATAAGATGT-CACT-GGAAGGACAG-  44

seq1  GATGACTGAGTGGCTACAGGGGCAAGGAATAGGACATAATAGACCATAGT  100
      ||||||| |||||||||| | ||||| |||| ||||| ||||||||||||
seq2  GATGACT-AGTGGCTACA-GAGCAAGAAATA-GACAT-ATAGACCATAGT  90

seq1  ATCCAAACTTGGGATATTCTTGAATAGCTGCCCTTCCTTCCCTAAACAGC  150
      |||  |||||||||||| ||   |||||||||    ||||||||||||| 
seq2  ATC--AACTTGGGATATCCT--GATAGCTGCC---TCTTCCCTAAACAG-  132

seq1  CTGTTAGCCTTTGGAAGTGTCTGGGACATCTCCAGCCCAGCGTGACAGAG  200
      |||| || ||||||||||||||| ||||||||||||||||||||||||||
seq2  CTGTAAG-CTTTGGAAGTGTCTGAGACATCTCCAGCCCAGCGTGACAGAG  181

seq1  CATTTAGTGACCTGACTAGTTTAACCTTGCTGTACACAGCCAGCTGCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAGTGACCTGACTAGTTTAACCTTGCTGTACACAGCCAGCTGCTGG  231

seq1  CCAGCTGTCAGCCACCAGCAGGCAGGCACCAGGCACTAGTCAGCAGTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGTCAGCCACCAGCAGGCAGGCACCAGGCACTAGTCAGCAGTGAG  281

seq1  CTCCCAAATGTCCTGCAAGGGCATCTTGAACCCTCTGTTTCCAGTTTCCT  350
      ||||||||||| ||||||||||||||||||||||||||||||||||| ||
seq2  CTCCCAAATGT-CTGCAAGGGCATCTTGAACCCTCTGTTTCCAGTTT-CT  329

seq1  GACCTGAGGGAGGCAGCAGTTCCTGATATCCTTCCCATGAAAGGATGCTG  400
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GACCTGAGGGAGGCAGCAGTTCATGATATCCTTCCCATGAAAGGATGCTG  379

seq1  TAGTGCATGTGCCCTGGCCTGTGTGATACCTTTGAGGGCCAATCATAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCATGTGCCCTGGCCTGTGTGATACCTTTGAGGGCCAATCATAGCA  429

seq1  TGTAACCAAACAGGAGCTTTGCCGTAGGTGAAGCATCCTCTTCCGTGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACCAAACAGGAGCTTTGCCGTAGGTGAAGCATCCTCTTCCGTGTCT  479

seq1  GATTTTGTCTGACTTTGTCCCTGACATTGCTTGGAGAGGGTCCTTTCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGTCTGACTTTGTCCCTGACATTGCTTGGAGAGGGTCCTTTCAGG  529

seq1  AATCCCATCCAGACGTCCCATGTAGGACCCCAGATGCTACAGGAGTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCATCCAGACGTCCCATGTAGGACCCCAGATGCTACAGGAGTCTCT  579

seq1  GTGGGTAGTTTGCAGTCACAGGAGGTTGAGGTACCTTCCTCGTAGTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTAGTTTGCAGTCACAGGAGGTTGAGGTACCTTCCTCGTAGTTCCT  629

seq1  GAGGCAGCTCCAGTACCACCCATGATTAAGACTTCAGGTCCTGAGTGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGCTCCAGTACCACCCATGATTAAGACTTCAGGTCCTGAGTGTTC  679

seq1  TTGGTTGTTCTGAAAATGCAAAGGCAAAATCTGGGCCCGGAGAAACAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGTTCTGAAAATGCAAAGGCAAAATCTGGGCCCGGAGAAACAATC  729

seq1  CTGTGGGTCTGGATGAATTTGGGACTAAAGCTCTTTGGGAGATGCTCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGTCTGGATGAATTTGGGACTAAAGCTCTTTGGGAGATGCTCTTG  779

seq1  TTATCTCATAAACCTCAGATCTCAAGTTCACATCTAGGGAACCTGGCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCATAAACCTCAGATCTCAAGTTCACATCTAGGGAACCTGGCAGA  829

seq1  TCTGCAATGTAAAAGAGTGCTCGATTAGAGGCACATCCTTATGATCCTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAATGTAAAAGAGTGCTCGATTAGAGGCACATCCTTATGATCCTAG  879

seq1  CTGGGTGTAGGATCAGAGCAGAGGAGGGATTTTTCTTCTTTAGGCTGACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGTAGGATCAGAGCAGAGGAGGGATTTTTCTTCTTTAGGCTGACT  929

seq1  TACGTTTAAATTACTAGGTTGAATTCTATGAAATCATCTGTACTTCTTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTTTAAATTACTAGGTTGAATTCTATGAAATCATCTGTACTTCTTAT  979

seq1  ATCTGTGGTAATCTTCATATGATCCAATCCAATATATTTTCATCCCTCCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTGGTAATCTTCATATGATCCAATCCAATATATTTTCATCCCTCCT  1029

seq1  CGTATTTGTTTTTGTTAGATCCTGTCCCCTGATGATTACGGATGAGTGAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATTTGTTTTTGTTAGATCCTGTCCCCTGATGATTACGGATGAGTGAA  1079

seq1  TTC  1103
      |||
seq2  TTC  1082