BAC Information

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BAC

Clone NameB6Ng01-138F03
Chromosome1 (Build37)
Map Location 84,840,407 - 84,988,485
singlet/doubletdoublet
Overlap geneFbxo36, Slc16a14
Upstream gene5033414K04Rik, LOC100039638, Dner, Trip12
Downstream geneLOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378, C130026I21Rik, LOC100040135, LOC639868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138F03.bB6Ng01-138F03.g
ACCDH937614DH937615
length1,0361,019
definitionDH937614|Mus musculus domesticus DNA, BAC clone: B6Ng01-138F03, 5' end.DH937615|Mus musculus domesticus DNA, BAC clone: B6Ng01-138F03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,840,407 - 84,841,444)(84,987,463 - 84,988,485)
sequence
gaattcacagaaagccacctccctctacctctgagtgctagggttaccag
gcccacgggcagccaatgtttttttttttttttttaaatcaacgattcat
ctatttaacttcactccagttttaatattgtgtttattgaatttttttta
atgatttatttttattttatgtgcattggtatttttgcctgcccatatat
ctggctagaaacacatcttaaatattacttaagccagggatatttttata
tgtgccgtctaagaaaatctcaattatttttctgaatacaaagattttcc
ttaatcaacaacttagcacttacttatagggacaaagaaatgtaagattc
ctgcttccaaagaaagtcacattcatccaacatgttatatatgccaggta
ctattccagaaactgggaaatattagtgacaaccacttcctttcatgaaa
catccagtctattaggaacaataaagttagtgttataaacttagtttttt
ttaagtctcactacttaccccaggctggccttgaactcaagatcctcctg
ctccagactcctgagtgggaaagttacaagcatgagctcttcttcccact
tagtatagtgcccagtgcatacttcattcagttaacagtatagatacttt
aaaaatctgtgactccaaagaaggcctagaaaattgtgtggttgaggtta
atgctgttaaaaatattttgtcttctggaactgaaggtgggtgtagctca
tcctctccaacactcaaaattgcacaaaaattctgtttttgttgttgttt
tgtatttgttttctaaaacctgcacctccagggactagaaaaatggcctg
ctcttgcagaggtccagggttctgttctgcacccacatcctggctaacaa
ccttctgtgacttcaatctcaggggatctgatgccttcttgtgactcctc
aaacaataggcacacccacatgcacgtatatacatgtggacacagtcata
cacataatattaggatggggggtggagggggtgggt
gaattccttgtgtcctcagtctgataagactttattgaaagcctggttca
tatggaacgtgtgagatattttcagccacttcaactgtagcaatctccct
tctacaccttgtgacactctctttctaacttgtaacagttgcagaaggca
tgagtcattgcaattcctagacatagcctccccataatatgcaaaccatt
atcacaaggtgccgcccagtgttcgtttcctcctctgggtatccaggctc
attaaacaccaactaaacgggggcaggtgggtgcaatacaggatcttagt
tgatggtgagagcacaagaaacaaacagccttctcaggagacagctcctt
taattggagcagaagaaaggccatttatatctttggggaatgggtagagg
cttttgaggggaatagacatcattgaccagagccagggttctgggaatac
cttatttgcatgaagaggaatcccaggtgcttgccaaatgtgaccttata
aggagagaggaagttgaacctgtaacctggctgccaggctaaagggccac
ctcagggttggcagaggttgggagtgtaaggctacgtggacctggacgtg
caggcccagggcaggaaaggaacagtcctattcctgctggtctcaaaatg
agattttgggggtttggatataccttgacttctgtcttgacacacacaca
cacctgccccagttgcatggctccccagctccacaataggggcaccagca
atatggcacggaggcaagcttcaaacctgagtttgatcaccagaacccaa
gtaaatgtggaaggagaaaactgactgcacagagttgacctctgacctcc
atgtatgactggtggcgagtgcttattcccatagtaataaataaaagggt
ttgtttgtttgttttttctaatacacaccaaacatcacagggatgaccat
gtatgggttttacctggagaggatgatggaaaaagaaatggggagggacg
aggaaggatacttgggcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_84840407_84841444
seq2: B6Ng01-138F03.b_41_1076

seq1  GAATTCACAGAAAGCCACCTCCCTCTACCTCTGAGTGCTAGGGTTACCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAAAGCCACCTCCCTCTACCTCTGAGTGCTAGGGTTACCAG  50

seq1  GCCCACGGGCAGCCAATGTTTTTTTTTTTTTTTTTAAATCAACGATTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACGGGCAGCCAATGTTTTTTTTTTTTTTTTTAAATCAACGATTCAT  100

seq1  CTATTTAACTTCACTCCAGTTTTAATATTGTGTTTATTGAATTTTTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTAACTTCACTCCAGTTTTAATATTGTGTTTATTGAATTTTTTTTA  150

seq1  ATGATTTATTTTTATTTTATGTGCATTGGTATTTTTGCCTGCCCATATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTATTTTTATTTTATGTGCATTGGTATTTTTGCCTGCCCATATAT  200

seq1  CTGGCTAGAAACACATCTTAAATATTACTTAAGCCAGGGATATTTTTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTAGAAACACATCTTAAATATTACTTAAGCCAGGGATATTTTTATA  250

seq1  TGTGCCGTCTAAGAAAATCTCAATTATTTTTCTGAATACAAAGATTTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCGTCTAAGAAAATCTCAATTATTTTTCTGAATACAAAGATTTTCC  300

seq1  TTAATCAACAACTTAGCACTTACTTATAGGGACAAAGAAATGTAAGATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCAACAACTTAGCACTTACTTATAGGGACAAAGAAATGTAAGATTC  350

seq1  CTGCTTCCAAAGAAAGTCACATTCATCCAACATGTTATATATGCCAGGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCCAAAGAAAGTCACATTCATCCAACATGTTATATATGCCAGGTA  400

seq1  CTATTCCAGAAACTGGGAAATATTAGTGACAACCACTTCCTTTCATGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCCAGAAACTGGGAAATATTAGTGACAACCACTTCCTTTCATGAAA  450

seq1  CATCCAGTCTATTAGGAACAATAAAGTTAGTGTTATAAACTTAGTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGTCTATTAGGAACAATAAAGTTAGTGTTATAAACTTAGTTTTTT  500

seq1  TTAAGTCTCACTACTTACCCCAGGCTGGCCTTGAACTCAAGATCCTCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTCTCACTACTTACCCCAGGCTGGCCTTGAACTCAAGATCCTCCTG  550

seq1  CTCCAGACTCCTGAGTGGGAAAGTTACAAGCATGAGCTCTTCTTCCCACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGACTCCTGAGTGGGAAAGTTACAAGCATGAGCTCTTCTTCCCACT  600

seq1  TAGTATAGTGCCCAGTGCATACTTCATTCAGTTAACAGTATAGATACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATAGTGCCCAGTGCATACTTCATTCAGTTAACAGTATAGATACTTT  650

seq1  AAAAATCTGTGACTCCAAAGAAGGCCTAGAAAATTGTGTGGTTGAGGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTGTGACTCCAAAGAAGGCCTAGAAAATTGTGTGGTTGAGGTTA  700

seq1  ATGCTGTTAAAAATATTTTGTCTTCTGGAACTGAAGGTGGGTGTAGCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTTAAAAATATTTTGTCTTCTGGAACTGAAGGTGGGTGTAGCTCA  750

seq1  TCCTCTCCAACACTCAAAATTGCACAAAAATTCTGTTTTTGTTGTTGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCCAACACTCAAAATTGCACAAAAATTCTGTTTTTGTTGTTGTTT  800

seq1  TGTATTTGTTTTCTAAAACCTGCACCTCCAGGGACTAGAAAAATGGCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTGTTTTCTAAAACCTGCACCTCCAGGGACTAGAAAAATGGCCTG  850

seq1  CTCTTGCAGAGGTCCAGGGTTCTGTTCTGCACCCACATCCTGGCTAACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGCAGAGGTCCAGGGTTCTGTTCTGCACCCACATCCTGGCTAACAA  900

seq1  CCTTCTGTGACTTCAATCTCAGGGGATCTGATGCCTTCTTGTGACTCCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGTGACTTCAATCTCAGGGGATCTGATGCCTTCTTGTGACTCCTC  950

seq1  AAACAATAGGCACACCCACAATGCACGTATATACATGTGGACACAGTCAT  1000
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAACAATAGGCACACCCAC-ATGCACGTATATACATGTGGACACAGTCAT  999

seq1  ACACATAAAATAAATAGAAAGGGGGGTG--AGGGGTGGGT  1038
      |||||||| ||   ||| | ||||||||   |||||||||
seq2  ACACATAATAT---TAGGATGGGGGGTGGAGGGGGTGGGT  1036

seq1: chr1_84987463_84988485
seq2: B6Ng01-138F03.g_69_1087 (reverse)

seq1  AGGCCCAAGCTCTCCTTCCTCAGTCCCTTCCCCATTTTCTTTTTCCATTC  50
      ||||||||| | ||||||||| ||||| |||||| |||||||||||| ||
seq2  AGGCCCAAG-TATCCTTCCTC-GTCCC-TCCCCA-TTTCTTTTTCCA-TC  45

seq1  ATCCTCTCCAGGTAAAACCCATACATGGTCATCCCTGTGATGTTTGGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTCCAGGTAAAACCCATACATGGTCATCCCTGTGATGTTTGGTGT  95

seq1  GTATTTAGAAAAAACAAACAAACAAACCC-TTTATTTATTACTATGGGAA  149
      ||| ||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTA-TTAGAAAAAACAAACAAACAAACCCTTTTATTTATTACTATGGGAA  144

seq1  TGAGCACTCGCCA-CAGTCATACATGGAGGTCAGAGGTCAACTCTGTGCA  198
      | ||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAAGCACTCGCCACCAGTCATACATGGAGGTCAGAGGTCAACTCTGTGCA  194

seq1  GTCAGTTTTCTCCTTCCACATTTACTTGGGTTCTGGTGATCAAACTCAGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTTTCTCCTTCCACATTTACTTGGGTTCTGGTGATCAAACTCAGG  244

seq1  TTTGAAGCTTGCCTCCGTGCCATATTGCTGGTGCCCCTATTGTGGAGCTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGCTTGCCTCCGTGCCATATTGCTGGTGCCCCTATTGTGGAGCTG  294

seq1  GGGAGCCATGCAACTGGGGCAGGTGTGTGTGTGTGTCAAGACAGAAGTCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCATGCAACTGGGGCAGGTGTGTGTGTGTGTCAAGACAGAAGTCA  344

seq1  AGGTATATCCAAACCCCCAAAATCTCATTTTGAGACCAGCAGGAATAGGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATATCCAAACCCCCAAAATCTCATTTTGAGACCAGCAGGAATAGGA  394

seq1  CTGTTCCTTTCCTGCCCTGGGCCTGCACGTCCAGGTCCACGTAGCCTTAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCTTTCCTGCCCTGGGCCTGCACGTCCAGGTCCACGTAGCCTTAC  444

seq1  ACTCCCAACCTCTGCCAACCCTGAGGTGGCCCTTTAGCCTGGCAGCCAGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCAACCTCTGCCAACCCTGAGGTGGCCCTTTAGCCTGGCAGCCAGG  494

seq1  TTACAGGTTCAACTTCCTCTCTCCTTATAAGGTCACATTTGGCAAGCACC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGGTTCAACTTCCTCTCTCCTTATAAGGTCACATTTGGCAAGCACC  544

seq1  TGGGATTCCTCTTCATGCAAATAAGGTATTCCCAGAACCCTGGCTCTGGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTCCTCTTCATGCAAATAAGGTATTCCCAGAACCCTGGCTCTGGT  594

seq1  CAATGATGTCTATTCCCCTCAAAAGCCTCTACCCATTCCCCAAAGATATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATGTCTATTCCCCTCAAAAGCCTCTACCCATTCCCCAAAGATATA  644

seq1  AATGGCCTTTCTTCTGCTCCAATTAAAGGAGCTGTCTCCTGAGAAGGCTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCCTTTCTTCTGCTCCAATTAAAGGAGCTGTCTCCTGAGAAGGCTG  694

seq1  TTTGTTTCTTGTGCTCTCACCATCAACTAAGATCCTGTATTGCACCCACC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCTTGTGCTCTCACCATCAACTAAGATCCTGTATTGCACCCACC  744

seq1  TGCCCCCGTTTAGTTGGTGTTTAATGAGCCTGGATACCCAGAGGAGGAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCCGTTTAGTTGGTGTTTAATGAGCCTGGATACCCAGAGGAGGAAA  794

seq1  CGAACACTGGGCGGCACCTTGTGATAATGGTTTGCATATTATGGGGAGGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACACTGGGCGGCACCTTGTGATAATGGTTTGCATATTATGGGGAGGC  844

seq1  TATGTCTAGGAATTGCAATGACTCATGCCTTCTGCAACTGTTACAAGTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTAGGAATTGCAATGACTCATGCCTTCTGCAACTGTTACAAGTTA  894

seq1  GAAAGAGAGTGTCACAAGGTGTAGAAGGGAGATTGCTACAGTTGAAGTGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGAGTGTCACAAGGTGTAGAAGGGAGATTGCTACAGTTGAAGTGG  944

seq1  CTGAAAATATCTCACACGTTCCATATGAACCAGGCTTTCAATAAAGTCTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAATATCTCACACGTTCCATATGAACCAGGCTTTCAATAAAGTCTT  994

seq1  ATCAGACTGAGGACACAAGGAATTC  1023
      |||||||||||||||||||||||||
seq2  ATCAGACTGAGGACACAAGGAATTC  1019