BAC Information

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BAC

Clone NameB6Ng01-138G09
Chromosome1 (Build37)
Map Location 144,011,460 - 144,143,760
singlet/doubletdoublet
Overlap geneLOC639376
Upstream geneEG226472
Downstream geneLOC545369
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138G09.bB6Ng01-138G09.g
ACCDH937670DH937671
length1,0121,144
definitionDH937670|Mus musculus domesticus DNA, BAC clone: B6Ng01-138G09, 5' end.DH937671|Mus musculus domesticus DNA, BAC clone: B6Ng01-138G09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(144,011,460 - 144,012,475)(144,142,585 - 144,143,760)
sequence
gaattcattactgtaacaaatataataacgtactttgtgagagataaaac
ttttatttttgtctaactgttatagaactttttgtctatgatcaatcaga
ctcattgcattgaccctatgctaacatattgcacaaggggttaattacaa
agcaaactagctcatctcaccataagaaatgcaaagaaaatcaattcaaa
tagaaaattaaaaactacatgaatattttataaatcacataaaatgcagt
atattttcatctaatatatatatacatacatatatacatatatatatata
tatatgtatatatatatatatatatattaaagtgtatgtgatagttttag
attcctgaacttttgacatcatgaactttctctctgatatcttgtccaaa
acatcttaaaatcttacgatatttttgaaagctgtttctaagatagccct
ctgccctcctttaaagcaacatagtaacactttatctttaatggcagtat
agcatagaaaattatttatctgagtaaatattctgaaactcagaatcatc
ctaaatcaggtagcaattcttgtttattacattttcattgtatattgaat
ttttctaataaattcaaactgttaatgtagttttcaaaaggattgatata
actactctataagtaatccatcataaattaatatcaaatgaaataagtat
aatctcaatgtttttatgccttcatttgtgatttttttttttgaattcct
gtgtatgaactcgtatgtctccatgttgagatgggttcttatgctctttc
ttttcacttttttttctgtttgttttgtcctattcttgttaattatatga
tattacaaatgccagtccagactactataacccccaatcattatgctttc
aatcattatgctgaggaaacaagatattccatgaccaaccaaattttatc
tttatctatccaaatcaagccctatagacatacgaagttactagtagaaa
agctacaaccaa
gaattcagagttagtaacctgttcatgcctttctgaaatgaaaaatgttc
ttgaataagcatgaactatatcagcacattttgttagggatgaaaaaaaa
aaaccaccaacaactataaactgagtgttataaattacagcctctctaac
aaatgaagagtaatgaataatcttatccagggtgaaatagagaaagttaa
ttggggagtttaactgctaagctaatagcattgaaatgaaatgaataggt
ttttctgtattgtaagtttttcttttataatagcctcattaaaaataaaa
tgcataagatagttttaaaaactaaatttataaaatgcaattttaggaag
tagtctagtttatcttgattaatggattttcttcttgaaaacatgcttac
tttcctcaaaccatctaatgcatgaaaatattttaaggtgttatgaatgt
acaattttctaagtaggtctggacatgttgagtatgattttaaagggatg
ttagaatatataaactttatatagataaattaatatgagaaattggtgcg
agaaattgtgagagaattctgaagaaattcagttttcatgcattctccca
ggccttttctacacatacttttaaatttaaaatatcccttgtacaggata
atgcagctgctcactagcaaatcctgttcttcttcccacaaatgaataac
atgcaaaagtctgaagggtatctttgaatgacatggcaaaaggaaaactg
ttttcatagaaaaaagtatgtggatttgtgactcttgggttttgggtatt
ttatttgggatgtgcatggagtttagtttattctcagcttcaaataatct
ggtatcacctgggatagtggctccctgtaaggaatgcttaagttactctg
tgcctttccctctagatataattcttaaactaatggagaagataatatat
tcttaaactaatggagagatttacccatttgggttcacagtttttatgag
gataatgaaccatatagagagtaaatggagcagagtgtagcatgaagctt
tgctctggcttcgacattgcttcatggaacgggcgtcagcagggactgtg
atgtcctgcttgaacaaggacataactgtgaagctaaaaaccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_144011460_144012475
seq2: B6Ng01-138G09.b_49_1060

seq1  GAATTCATTACTGTAACAAATATAATAA-GTACTTTGTGAGAGATAAAAC  49
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GAATTCATTACTGTAACAAATATAATAACGTACTTTGTGAGAGATAAAAC  50

seq1  TTTTATTTTTGTCTAACTGTTATAGAACTTTTTGTCTATGATCAATCAGA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTTGTCTAACTGTTATAGAACTTTTTGTCTATGATCAATCAGA  100

seq1  CTCATTGCATTGACCCTATGCTAACATATTGCACAAGGGGTTAATTACAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGCATTGACCCTATGCTAACATATTGCACAAGGGGTTAATTACAA  150

seq1  AGCAAACTAGCTCATCTCACCATAAGAAATGCAAAGAAAATCAATTCAAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACTAGCTCATCTCACCATAAGAAATGCAAAGAAAATCAATTCAAA  200

seq1  TAGAAAATTAAAAACTACATGAATATTTTATAAATCACATAAAATGCAGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAATTAAAAACTACATGAATATTTTATAAATCACATAAAATGCAGT  250

seq1  ATATTTTCATCTAATATATATATACATACATATATACATATATATATATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTCATCTAATATATATATACATACATATATACATATATATATATA  300

seq1  TATATGTATATATATATATATATATATTAAAGTGTATGTGATAGTTTTAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTATATATATATATATATATATTAAAGTGTATGTGATAGTTTTAG  350

seq1  ATTCCTGAACTTTTGACATCATGAACTTTCTCTCTGATATCTTGTCCAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGAACTTTTGACATCATGAACTTTCTCTCTGATATCTTGTCCAAA  400

seq1  ACATCTTAAAATCTTACGATATTTTTGAAAGCTGTTTCTAAGATAGCCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTTAAAATCTTACGATATTTTTGAAAGCTGTTTCTAAGATAGCCCT  450

seq1  CTGCCCTCCTTTAAAGCAACATAGTAACACTTTATCTTTAATGGCAGTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTCCTTTAAAGCAACATAGTAACACTTTATCTTTAATGGCAGTAT  500

seq1  AGCATAGAAAATTATTTATCTGAGTAAATATTCTGAAACTCAGAATCATC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAGAAAATTATTTATCTGAGTAAATATTCTGAAACTCAGAATCATC  550

seq1  CTAAATCAGGTAGCAATTCTTGTTTATTACATTTTCATTGTATATTGAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATCAGGTAGCAATTCTTGTTTATTACATTTTCATTGTATATTGAAT  600

seq1  TTTTCTAATAAATTCAAACTGTTAATGTAGTTTTCAAAAGGATTGATATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAATAAATTCAAACTGTTAATGTAGTTTTCAAAAGGATTGATATA  650

seq1  ACTACTCTATAAGTAATCCATCATAAATTAATATCAAATGAAATAAGTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTCTATAAGTAATCCATCATAAATTAATATCAAATGAAATAAGTAT  700

seq1  AATCTCAATGTTTTTATGCCTTCATTTGTGATTTTTTTTTTTGAATTCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCAATGTTTTTATGCCTTCATTTGTGATTTTTTTTTTTGAATTCCT  750

seq1  GTGTATGAACTCGTATGTCTCCATGTTGAGATGGGTTCTTATGCTCTTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGAACTCGTATGTCTCCATGTTGAGATGGGTTCTTATGCTCTTTC  800

seq1  -TTTCACTTTTTTTTCTGTTTGTTTTGTCCTATTCTTGTTAATTATATGA  848
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACTTTTTTTTCTGTTTGTTTTGTCCTATTCTTGTTAATTATATGA  850

seq1  TATTACAAATGCCAGTCCAGACTACTATAACCCCCAATCATTATGCTTTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTACAAATGCCAGTCCAGACTACTATAACCCCCAATCATTATGCTTTC  900

seq1  AATCATTATGCTTGAGGAAAACAAGATATCCCATGACCAAACCAAATTTT  948
      ||||||||||| ||||| ||||||||||| |||||||| |||||||||||
seq2  AATCATTATGC-TGAGG-AAACAAGATATTCCATGACC-AACCAAATTTT  947

seq1  ATCTTTATCTATCCCAAAATCAAGCCCTATAGACATACAGAAGTTACTAG  998
      ||||||||||||||  |||||||||||||||||||||| |||||||||||
seq2  ATCTTTATCTATCC--AAATCAAGCCCTATAGACATAC-GAAGTTACTAG  994

seq1  TAGAAAAGCTACAACCAA  1016
      ||||||||||||||||||
seq2  TAGAAAAGCTACAACCAA  1012

seq1: chr1_144142585_144143760
seq2: B6Ng01-138G09.g_68_1211 (reverse)

seq1  AGGGTTTATTTTAGC-TCACAGTTTTGTTACCATTGTTCATAGCAGGGAC  49
      |||||   ||||||| |||||||| |||   | ||||||| |||| ||||
seq2  AGGGT---TTTTAGCTTCACAGTTATGT---CCTTGTTCA-AGCA-GGAC  42

seq1  ATCACAAGTACACTGACCTGACAGCACTGTTCACATTGGAAGCATAGTCA  99
      ||||| ||| | |||  ||||| || | |||| |||  ||||||  ||| 
seq2  ATCAC-AGT-CCCTG--CTGAC-GC-CCGTTC-CAT--GAAGCAATGTC-  82

seq1  GAAGCCAAGAGCAAAGCATTCATGCTTACACTCTGCTCACTTTTACTGCT  149
      |||||| |||||||||| ||||||| |||||||||||| | |||||| ||
seq2  GAAGCC-AGAGCAAAGC-TTCATGC-TACACTCTGCTC-CATTTACT-CT  127

seq1  CTTATATGGTTCATTATCCTTTCAATAGAAAACTGTGAACCCAAAATGGG  199
      | ||||||||||||||||||    ||| |||||||||||||| |||||||
seq2  C-TATATGGTTCATTATCCT---CATA-AAAACTGTGAACCC-AAATGGG  171

seq1  TAAATCTTCTCCATTAGTTTAAGAATTATATTATCTTCTCCATTAGTTTA  249
      |||||| |||||||||||||||||| ||||||||||||||||||||||||
seq2  TAAATC-TCTCCATTAGTTTAAGAA-TATATTATCTTCTCCATTAGTTTA  219

seq1  AGAATTATATTCTAGAGGGAAAGGCACAGAGTAACTTAAGCATTCCTTTA  299
      ||||||||| |||||||||||||||||||||||||||||||||||| |||
seq2  AGAATTATA-TCTAGAGGGAAAGGCACAGAGTAACTTAAGCATTCC-TTA  267

seq1  CAGGGAGCCACTATCCCAGGTGATACCAGATTATTTGAAGCTGAGAATTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAGGGAGCCACTATCCCAGGTGATACCAGATTATTTGAAGCTGAGAA-TA  316

seq1  AACTAAACTCCATGCACAT-CCAAATAAAATACCCAAAACCCAAGAGTCA  398
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AACTAAACTCCATGCACATCCCAAATAAAATACCCAAAACCCAAGAGTCA  366

seq1  CAAATCCACATACTTTTTTCTATGAAAACAGTTTTCCTTTTGCCATGTCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCACATACTTTTTTCTATGAAAACAGTTTTCCTTTTGCCATGTCA  416

seq1  TTCAAAGATACCCTTCAGACTTTTGCATGTTATTCATTTGTGGGAAGAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGATACCCTTCAGACTTTTGCATGTTATTCATTTGTGGGAAGAAG  466

seq1  AACAGGATTTGCTAGTGAGCAGCTGCATTATCCTGTACAAGGGATATTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGATTTGCTAGTGAGCAGCTGCATTATCCTGTACAAGGGATATTTT  516

seq1  AAATTTAAAAGTATGTGTAGAAAAGGCCTGGGAGAATGCATGAAAACTGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAAAGTATGTGTAGAAAAGGCCTGGGAGAATGCATGAAAACTGA  566

seq1  ATTTCTTCAGAATTCTCTCACAATTTCTCGCACCAATTTCTCATATTAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTCAGAATTCTCTCACAATTTCTCGCACCAATTTCTCATATTAAT  616

seq1  TTATCTATATAAAGTTTATATATTCTAACATCCCTTTAAAATCATACTCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTATATAAAGTTTATATATTCTAACATCCCTTTAAAATCATACTCA  666

seq1  ACATGTCCAGACCTACTTAGAAAATTGTACATTCATAACACCTTAAAATA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTCCAGACCTACTTAGAAAATTGTACATTCATAACACCTTAAAATA  716

seq1  TTTTCATGCATTAGATGGTTTGAGGAAAGTAAGCATGTTTTCAAGAAGAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATGCATTAGATGGTTTGAGGAAAGTAAGCATGTTTTCAAGAAGAA  766

seq1  AATCCATTAATCAAGATAAACTAGACTACTTCCTAAAATTGCATTTTATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATTAATCAAGATAAACTAGACTACTTCCTAAAATTGCATTTTATA  816

seq1  AATTTAGTTTTTAAAACTATCTTATGCATTTTATTTTTAATGAGGCTATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGTTTTTAAAACTATCTTATGCATTTTATTTTTAATGAGGCTATT  866

seq1  ATAAAAGAAAAACTTACAATACAGAAAAACCTATTCATTTCATTTCAATG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGAAAAACTTACAATACAGAAAAACCTATTCATTTCATTTCAATG  916

seq1  CTATTAGCTTAGCAGTTAAACTCCCCAATTAACTTTCTCTATTTCACCCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAGCTTAGCAGTTAAACTCCCCAATTAACTTTCTCTATTTCACCCT  966

seq1  GGATAAGATTATTCATTACTCTTCATTTGTTAGAGAGGCTGTAATTTATA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAGATTATTCATTACTCTTCATTTGTTAGAGAGGCTGTAATTTATA  1016

seq1  ACACTCAGTTTATAGTTGTTGGTGGTTTTTTTTTTTCATCCCTAACAAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCAGTTTATAGTTGTTGGTGGTTTTTTTTTTTCATCCCTAACAAAA  1066

seq1  TGTGCTGATATAGTTCATGCTTATTCAAGAACATTTTTCATTTCAGAAAG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGATATAGTTCATGCTTATTCAAGAACATTTTTCATTTCAGAAAG  1116

seq1  GCATGAACAGGTTACTAACTCTGAATTC  1176
      ||||||||||||||||||||||||||||
seq2  GCATGAACAGGTTACTAACTCTGAATTC  1144