BAC Information

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BAC

Clone NameB6Ng01-138J18
Chromosome1 (Build37)
Map Location 92,456,897 - 92,589,577
singlet/doubletdoublet
Overlap geneCops8
Upstream geneCentg2, Gbx2, Asb18, Iqca, Cxcr7
Downstream geneCol6a3, Mlph, Prlh, Rab17, Lrrfip1, Gm817, LOC665766, Ramp1, Ube2f, LOC665783, Scly, Espnl, Klhl30, BC056923, Ilkap, 1700020N18Rik, Hes6, Per2, Traf3ip1, Asb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138J18.bB6Ng01-138J18.g
ACCDH937820DH937821
length1,091972
definitionDH937820|Mus musculus domesticus DNA, BAC clone: B6Ng01-138J18, 5' end.DH937821|Mus musculus domesticus DNA, BAC clone: B6Ng01-138J18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,588,481 - 92,589,577)(92,456,897 - 92,457,904)
sequence
gaattcttggagcatggcacttcctagatagtgtgcagtcatctctctgc
tattcagagttctcacatgcttgcacacattcacatacaacacccagggg
ttttgttgcacttgaaggacaagggaggggagggtacctttacccatgtt
ctcggaagcagcacttccttccctctagtccatgtgaggctatgtgacct
catgttcatacctacttttaaaatcttttaatagtttctgcagggtttgc
aataatgaaatattcaacaatcggtgcccacccttaaataacaattcagg
gaccttgaggcagagtatccagctctcgccacacacacaccagctcctct
ctgtacctactatacaactccaacatgctggaacctatgaccaatttaca
cagttatctttaaatcgatcaggaatatgatgtggaaaggtggggacttt
gttctaccctcattatctttctttcccacatcgcttcctttcttcatgga
gttcacagttcctgactgaagacaaacacatctcctaggctgggtctact
gacaggaatcccttagtgtttgcctgagaaaaccattattcatctcccct
agcaagggtaactttgtagaacataactcccaagtctacactcctgggag
accaaaggtaggctgtgctgctggcaatgtaggctctgcatgtcttcagc
atttccctgtattgtaccaatctacaggtcaccaacgcaaagctgctttt
tggctggggtgttttggcacagggttgaactgaggacagtgtctttgtgc
ctgtcacacacattaatctcttgtcacttatttgtgcagcaggtgctcct
tctaagatgcaggctcacctttgtgcttgcttgttgaaccaacagggcac
tttgctcttatgagaaggtgccttgttctattgagccccacctttccgct
atgggttttaattctagaattctttagaagattatttcttacagttctat
cctctgcgtggaatgctatgctctgtcatcctgccttggggagttattct
ttctaccttgctggacttggagtctgatgctaaatcatttc
gaattccttaagtgatgaacagcaatttggaaatacaagctgaataaacc
ctttcctccccaacttgtttattggtcatgatgtttgtgcagggatagaa
accctgactaagacactctctaccttacatatccctgtctgaccttactg
tgatcacagaaggccctttatggagggaaagttgaagacccacagaggtg
cactagtcatgcccaaagccacatcactgctttcagaagatccaggaaag
acagacaggtctccacctggaccaacaggagttagatgagccccagcctg
gagagcattagggtcgctttttatggcacatgaaatctctaggttggttc
ccttaccattctcaatgtttctttcccttatggcccttccagaaagggtt
gttgatgttcctcacatcatttggagttttctcacctctacatgtcttcc
aactcccccattatcaaaggaaggttttcctccaaagattgccagaaagg
atgctttgcaaacagatttgagcttcctcgctgtcctgggaatgtgctca
gcccgggatatggaggtccctgaagcgtgggctctttgtttttctgagat
ggttgctaccttcattactgtctgcacagggcattttgacaaggttaggc
tccagcacactgctttgtggatctttttctacttagattctttcagaaga
cttattacatgtcagctcaggccacgaagctggactgtgggaaaaagagc
acgtgggtaatttaactttttgtattcaaacaagaaaacaaaagtcccca
gggaagagctggggctgaactcgtgccaaacactaatgtctcctgcatgg
caagcaagcccatgcgaataaacagccagagcttcagaccagatcctaaa
aacatcgaatggattcagaaacgccaattattgaactgaaatattccgaa
tcaagatcctgtactttgcata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_92588481_92589577
seq2: B6Ng01-138J18.b_49_1139 (reverse)

seq1  GAAATGAACTCAGCATCAGACTCAAGGTCCAGCAAGGTAGAAAAGAAATA  50
      |||||| | | |||||||||||| | |||||||||||||||||   ||||
seq2  GAAATG-ATTTAGCATCAGACTCCAAGTCCAGCAAGGTAGAAA--GAATA  47

seq1  ACT-CCCAAGGCAGGATGACAGAAGCAATAGCATCCAACGCAAGAGGATA  99
      ||| |||||||||||||||||| ||| ||||||| | |||| ||||||||
seq2  ACTCCCCAAGGCAGGATGACAG-AGC-ATAGCATTCCACGC-AGAGGATA  94

seq1  GAACTGTAAAGAAATAATCTTCTAAAGAATTCTAGAATTAAAAACCATTA  149
      ||||||| ||||||||||||||||||||||||||||||||||| ||| ||
seq2  GAACTGT-AAGAAATAATCTTCTAAAGAATTCTAGAATTAAAACCCA-TA  142

seq1  GCGGAAAGGTGGGGCTCAATAGAACAAGGCACCTTCTCATTAAGAGCAAA  199
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GCGGAAAGGTGGGGCTCAATAGAACAAGGCACCTTCTCA-TAAGAGCAAA  191

seq1  GTGCCCTGTTGGTTCAACAAGCAAGCACAAAGGTG-GCCTGCATCTTAGA  248
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTGCCCTGTTGGTTCAACAAGCAAGCACAAAGGTGAGCCTGCATCTTAGA  241

seq1  AGGAGCACCTGCTGCACAAATAAGTGACAAGAGATTAATGTGTGTGACAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCACCTGCTGCACAAATAAGTGACAAGAGATTAATGTGTGTGACAG  291

seq1  GCACAAAGACACTGTCCTCAGTTCAACCCTGTGCCAAAACACCCCAGCC-  347
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GCACAAAGACACTGTCCTCAGTTCAACCCTGTGCCAAAACACCCCAGCCA  341

seq1  AAAAGCAGCTTTGCGTTGGTGACCTGTAGATTGGTACAATACAGGGAAAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAGCTTTGCGTTGGTGACCTGTAGATTGGTACAATACAGGGAAAT  391

seq1  GCTGAAGACATGCAGAGCCTACATTGCCAGCAGCACAGCCTACCTTTGGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGACATGCAGAGCCTACATTGCCAGCAGCACAGCCTACCTTTGGT  441

seq1  CTCCCAGGAGTGTAGACTTGGGAGTTATGTTCTACAAAGTTACCCTTGCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGGAGTGTAGACTTGGGAGTTATGTTCTACAAAGTTACCCTTGCT  491

seq1  AGGGGAGATGAATAATGGTTTTCTCAGGCAAACACTAAGGGATTCCTGTC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGATGAATAATGGTTTTCTCAGGCAAACACTAAGGGATTCCTGTC  541

seq1  AGTAGACCCAGCCTAGGAGATGTGTTTGTCTTCAGTCAGGAACTGTGAAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGACCCAGCCTAGGAGATGTGTTTGTCTTCAGTCAGGAACTGTGAAC  591

seq1  TCCATGAAGAAAGGAAGCGATGTGGGAAAGAAAGATAATGAGGGTAGAAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGAAGAAAGGAAGCGATGTGGGAAAGAAAGATAATGAGGGTAGAAC  641

seq1  AAAGTCCCCACCTTTCCACATCATATTCCTGATCGATTTAAAGATAACTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCCCACCTTTCCACATCATATTCCTGATCGATTTAAAGATAACTG  691

seq1  TGTAAATTGGTCATAGGTTCCAGCATGTTGGAGTTGTATAGTAGGTACAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATTGGTCATAGGTTCCAGCATGTTGGAGTTGTATAGTAGGTACAG  741

seq1  AGAGGAGCTGGTGTGTGTGTGGCGAGAGCTGGATACTCTGCCTCAAGGTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGCTGGTGTGTGTGTGGCGAGAGCTGGATACTCTGCCTCAAGGTC  791

seq1  CCTGAATTGTTATTTAAGGGTGGGCACCGATTGTTGAATATTTCATTATT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATTGTTATTTAAGGGTGGGCACCGATTGTTGAATATTTCATTATT  841

seq1  GCAAACCCTGCAGAAACTATTAAAAGATTTTAAAAGTAGGTATGAACATG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCCTGCAGAAACTATTAAAAGATTTTAAAAGTAGGTATGAACATG  891

seq1  AGGTCACATAGCCTCACATGGACTAGAGGGAAGGAAGTGCTGCTTCCGAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCACATAGCCTCACATGGACTAGAGGGAAGGAAGTGCTGCTTCCGAG  941

seq1  AACATGGGTAAAGGTACCCTCCCCTCCCTTGTCCTTCAAGTGCAACAAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGGTAAAGGTACCCTCCCCTCCCTTGTCCTTCAAGTGCAACAAAA  991

seq1  CCCCTGGGTGTTGTATGTGAATGTGTGCAAGCATGTGAGAACTCTGAATA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGGTGTTGTATGTGAATGTGTGCAAGCATGTGAGAACTCTGAATA  1041

seq1  GCAGAGAGATGACTGCACACTATCTAGGAAGTGCCATGCTCCAAGAATTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAGATGACTGCACACTATCTAGGAAGTGCCATGCTCCAAGAATTC  1091

seq1: chr1_92456897_92457904
seq2: B6Ng01-138J18.g_67_1038

seq1  GAATTCCTTAAGTGATGAACAGCAATTTGGAAATACAAGCTGAATAAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAAGTGATGAACAGCAATTTGGAAATACAAGCTGAATAAACC  50

seq1  CTTTCCTCCCCAACTTGTTTATTGGTCATGATGTTTGTGCAGGGATAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTCCCCAACTTGTTTATTGGTCATGATGTTTGTGCAGGGATAGAA  100

seq1  ACCCTGACTAAGACACTCTCTACCTTACATATCCCTGTCTGACCTTACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGACTAAGACACTCTCTACCTTACATATCCCTGTCTGACCTTACTG  150

seq1  TGATCACAGAAGGCCCTTTATGGAGGGAAAGTTGAAGACCCACAGAGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCACAGAAGGCCCTTTATGGAGGGAAAGTTGAAGACCCACAGAGGTG  200

seq1  CACTAGTCATGCCCAAAGCCACATCACTGCTTTCAGAAGATCCAGGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGTCATGCCCAAAGCCACATCACTGCTTTCAGAAGATCCAGGAAAG  250

seq1  ACAGACAGGTCTCCACCTGGACCAACAGGAGTTAGATGAGCCCCAGCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGGTCTCCACCTGGACCAACAGGAGTTAGATGAGCCCCAGCCTG  300

seq1  GAGAGCATTAGGGTCGCTTTTTATGGCACATGAAATCTCTAGGTTGGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCATTAGGGTCGCTTTTTATGGCACATGAAATCTCTAGGTTGGTTC  350

seq1  CCTTACCATTCTCAATGTTTCTTTCCCTTATGGCCCTTCCAGAAAGGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACCATTCTCAATGTTTCTTTCCCTTATGGCCCTTCCAGAAAGGGTT  400

seq1  GTTGATGTTCCTCACATCATTTGGAGTTTTCTCACCTCTACATGTCTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATGTTCCTCACATCATTTGGAGTTTTCTCACCTCTACATGTCTTCC  450

seq1  AACTCCCCCATTATCAAAGGAAGGTTTTCCTCCAAAGATTGCCAGAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCCCCATTATCAAAGGAAGGTTTTCCTCCAAAGATTGCCAGAAAGG  500

seq1  ATGCTTTGCAAACAGATTTGAGCTTCCTCGCTGTCCTGGGAATGTGCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTGCAAACAGATTTGAGCTTCCTCGCTGTCCTGGGAATGTGCTCA  550

seq1  GCCCGGGATATGGAGGTCCCTGAAGCGTGGGCTCTTTGTTTTTCTGAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGGGATATGGAGGTCCCTGAAGCGTGGGCTCTTTGTTTTTCTGAGAT  600

seq1  GGTTGCTACCTTCATTACTGTCTGCACAGGGCATTTTGACAAGGTTAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTACCTTCATTACTGTCTGCACAGGGCATTTTGACAAGGTTAGGC  650

seq1  TCCAGCACACTGCTTTGTGGATC-TTTTCTACTTAGATTCTTTCAG-AGA  698
      ||||||||||||||||||||||| |||||||||||||||||||||| |||
seq2  TCCAGCACACTGCTTTGTGGATCTTTTTCTACTTAGATTCTTTCAGAAGA  700

seq1  CTTATTACATGTCAGCTCAGGGCCACGAAGCTGGGACTGTGGGACAAAGA  748
      ||||||||||||||||||| |||||||||||| ||||||||||| |||||
seq2  CTTATTACATGTCAGCTCA-GGCCACGAAGCT-GGACTGTGGGAAAAAGA  748

seq1  GGCACGTGGGTAATTTAACTTTTTGGTATTCAAACAAGAACACAAAAGTC  798
       ||||||||||||||||||||||| ||||||||||||||| |||||||||
seq2  -GCACGTGGGTAATTTAACTTTTT-GTATTCAAACAAGAAAACAAAAGTC  796

seq1  CCCAGGGAAGCAGCTGGGGCTGAACCCGTGCCAGACACTAATTGTCTCCC  848
      |||||||||| |||||||||||||| ||||||| ||||||| ||||||| 
seq2  CCCAGGGAAG-AGCTGGGGCTGAACTCGTGCCAAACACTAA-TGTCTCC-  843

seq1  TGGCAGTGGCAAGCAGCCCCATGCAGATAAACAGGCCCAGAGCCTTCAGG  898
        ||| |||||||||  |||||||  ||||||||  |||||| |||||  
seq2  -TGCA-TGGCAAGCAAGCCCATGCGAATAAACAG--CCAGAG-CTTCA--  886

seq1  GACACAGACCCCCTTAAAAACATCGATATGGAATCTCCCAGGAAAACGCA  948
      ||| |||| ||   |||||||||||| ||||| |    |||  |||||| 
seq2  GAC-CAGATCC---TAAAAACATCGA-ATGGATT----CAG--AAACGC-  924

seq1  CATATATGGGAACTTTGAAATGTAAT-TTCTGAATACTAAGAACTCCCTG  997
      ||  ||        ||||| || ||| ||| ||||   ||||    ||||
seq2  CAATTA--------TTGAACTGAAATATTCCGAAT--CAAGA---TCCTG  961

seq1  TACTTTGCATA  1008
      |||||||||||
seq2  TACTTTGCATA  972