BAC Information

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BAC

Clone NameB6Ng01-138K13
Chromosome1 (Build37)
Map Location 4,399,954 - 4,494,048
singlet/doubletdoublet
Overlap geneSox17
Upstream geneXkr4, LOC100038975, LOC664792, LOC619785, Rp1h
Downstream geneLOC664830, LOC664838, LOC664853, LOC619596, EG619980, LOC100039121, LOC620009, Mrpl15, Lypla1, Tcea1, LOC619829, Rgs20, Atp6v1h, EG636659
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138K13.bB6Ng01-138K13.g
ACCDH937857DH937858
length8771,070
definitionDH937857|Mus musculus domesticus DNA, BAC clone: B6Ng01-138K13, 5' end.DH937858|Mus musculus domesticus DNA, BAC clone: B6Ng01-138K13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,493,441 - 4,494,048)(4,399,954 - 4,401,033)
sequence
gaattccagggcacacctggaagtaaagaaaacagagtatagattggaaa
gatggtgtggccgggagatgatcacagtgagaaagcccacaggcatggag
ggacctagggcattgctcagttttcattgtgggaaatgaattctacattc
atgcacatgtgccttgaattaactgggaatactactgcataacactggaa
gtcagcaagttagaaaaaaacacctgaggaggagattggaattggatgta
tcttcaatttaaggcatatatgtacacatgcatgtaggaatagttattta
tgagtgtggatgggcttgcatctacaaaattcctcattcattaggtatat
gccctaagaaaccccagtggaaaactgaagccaaggataatactgacttc
tatattactgcttatcgtatacataaattttaatgatggtgtaatttaca
aattaagatacattgtaagaggttaataattttgtaacaacataatataa
taaaattatttaaaattttgagttgttcatttttaggatttttcatctaa
aatctctagtccttgacccttgtcaactgaaaccatgcaaaaggaaggtg
tggttatgagagtggtgtggaaatatgtttatgtttctgagctctgtctg
ctcaaaatgctcaatcagtgatgcctacagatccaggagagccctggcct
tcctttctaaatgttttctctctgaaacagatgctcaaaactccctggag
atagaactgaagcaaggaatgtacaggatgaatctgcaatgtctagttat
gctagatgtatggaaatggccaaaaatgactcagaatcaaaggataaagg
gggaagctcaaagggagatctgaaggt

gaattcctcatctgaggatggcctcaagccacgtgttgcaggggtatgta
tgagttacaggagcgtagaaggacaaacctatagccagaatactttccca
tgaagctttgttattgcccaaaaactacaattcccaatattccaggaagt
cacctggttcatgcgcaggtgggacttacagattcattttgggttttaca
aatggtctctcaattttcaattgcactcctaacaactatataaacaaata
gttgagctatacaaagcagattttgtgcagtatagctagcccaggaggtg
ggggaaaaaaccctcataacagagtaaatatacctacctttgaaagtctc
cattattttgattttggatatctggaaccctggatcaaggtccccagctg
tttgttcttgtttacttcaaagtctttaccaagttatacctgatatacaa
ggatttgcaaatatgtaataaacataatttgataaatttcaataaatact
tataccaatgaaaccattattacagtaaatataataaatatgtccagcat
attggggttgggagaatcattgtgagatcagcttacacaggatattctgt
taacttctttgagataggatctcgtgtttcctagactagctatatagcca
aggctagccttcagccctgatcctcctgcatttatctcccaaatactaga
attcctggcaggcacttccactgcaggcttctgaaaattttaatcacaaa
atatattattgttgtttatagatactatgtttgtacagcaaatagctaga
agttatttgtcatacaaaaacacaacagtacgcccttggataacatgccc
ccagttctccatgcccatcccagcatccaccatcctgctttctaacccta
tgatcctgactgcctcaaatcctacacataagtggatcgttgtttacttg
ccctttgctgcctggttactgcacttataatatgatctgggcctgatgct
gatctaatggcaagtgtctttttttatgactgagagtttttctactttat
agaagaggattataatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_4493441_4494048
seq2: B6Ng01-138K13.b_46_653 (reverse)

seq1  CATAACCACACCTTCCTTTTGCATGGTTTCAGTTGACAAGGGTCAAGGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACCACACCTTCCTTTTGCATGGTTTCAGTTGACAAGGGTCAAGGAC  50

seq1  TAGAGATTTTAGATGAAAAATCCTAAAAATGAACAACTCAAAATTTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGATTTTAGATGAAAAATCCTAAAAATGAACAACTCAAAATTTTAAA  100

seq1  TAATTTTATTATATTATGTTGTTACAAAATTATTAACCTCTTACAATGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTATTATATTATGTTGTTACAAAATTATTAACCTCTTACAATGTA  150

seq1  TCTTAATTTGTAAATTACACCATCATTAAAATTTATGTATACGATAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATTTGTAAATTACACCATCATTAAAATTTATGTATACGATAAGCA  200

seq1  GTAATATAGAAGTCAGTATTATCCTTGGCTTCAGTTTTCCACTGGGGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATAGAAGTCAGTATTATCCTTGGCTTCAGTTTTCCACTGGGGTTT  250

seq1  CTTAGGGCATATACCTAATGAATGAGGAATTTTGTAGATGCAAGCCCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGGCATATACCTAATGAATGAGGAATTTTGTAGATGCAAGCCCATC  300

seq1  CACACTCATAAATAACTATTCCTACATGCATGTGTACATATATGCCTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCATAAATAACTATTCCTACATGCATGTGTACATATATGCCTTAA  350

seq1  ATTGAAGATACATCCAATTCCAATCTCCTCCTCAGGTGTTTTTTTCTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGATACATCCAATTCCAATCTCCTCCTCAGGTGTTTTTTTCTAAC  400

seq1  TTGCTGACTTCCAGTGTTATGCAGTAGTATTCCCAGTTAATTCAAGGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGACTTCCAGTGTTATGCAGTAGTATTCCCAGTTAATTCAAGGCAC  450

seq1  ATGTGCATGAATGTAGAATTCATTTCCCACAATGAAAACTGAGCAATGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCATGAATGTAGAATTCATTTCCCACAATGAAAACTGAGCAATGCC  500

seq1  CTAGGTCCCTCCATGCCTGTGGGCTTTCTCACTGTGATCATCTCCCGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTCCCTCCATGCCTGTGGGCTTTCTCACTGTGATCATCTCCCGGCC  550

seq1  ACACCATCTTTCCAATCTATACTCTGTTTTCTTTACTTCCAGGTGTGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCATCTTTCCAATCTATACTCTGTTTTCTTTACTTCCAGGTGTGCCC  600

seq1  TGGAATTC  608
      ||||||||
seq2  TGGAATTC  608


seq1: chr1_4399954_4401033
seq2: B6Ng01-138K13.g_71_1140

seq1  GAATTCCTCATCTGAGGATGGCCTCAAGCCACGTGTTGCAGGGGTATGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCATCTGAGGATGGCCTCAAGCCACGTGTTGCAGGGGTATGTA  50

seq1  TGAGTTACAGGAGCGTAGAAGGACAAACCTATAGCCAGAATACTTTCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTACAGGAGCGTAGAAGGACAAACCTATAGCCAGAATACTTTCCCA  100

seq1  TGAAGCTTTGTTATTGCCCAAAAACTACAATTCCCAATATTCCAGGAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTTTGTTATTGCCCAAAAACTACAATTCCCAATATTCCAGGAAGT  150

seq1  CACCTGGTTCATGCGCAGGTGGGACTTACAGATTCATTTTGGGTTTTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGTTCATGCGCAGGTGGGACTTACAGATTCATTTTGGGTTTTACA  200

seq1  AATGGTCTCTCAATTTTCAATTGCACTCCTAACAACTATATAAACAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTCTCTCAATTTTCAATTGCACTCCTAACAACTATATAAACAAATA  250

seq1  GTTGAGCTATACAAAGCAGATTTTGTGCAGTATAGCTAGCCCAGGAGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGCTATACAAAGCAGATTTTGTGCAGTATAGCTAGCCCAGGAGGTG  300

seq1  GGGGAAAAAACCCTCATAACAGAGTAAATATACCTACCTTTGAAAGTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAAAAACCCTCATAACAGAGTAAATATACCTACCTTTGAAAGTCTC  350

seq1  CATTATTTTGATTTTGGATATCTGGAACCCTGGATCAAGGTCCCCAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTTGATTTTGGATATCTGGAACCCTGGATCAAGGTCCCCAGCTG  400

seq1  TTTGTTCTTGTTTACTTCAAAGTCTTTACCAAGTTATACCTGATATACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTTGTTTACTTCAAAGTCTTTACCAAGTTATACCTGATATACAA  450

seq1  GGATTTGCAAATATGTAATAAACATAATTTGATAAATTTCAATAAATACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGCAAATATGTAATAAACATAATTTGATAAATTTCAATAAATACT  500

seq1  TATACCAATGAAACCATTATTACAGTAAATATAATAAATATGTCCAGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCAATGAAACCATTATTACAGTAAATATAATAAATATGTCCAGCAT  550

seq1  ATTGGGGTTGGGAGAATCATTGTGAGATCAGCTTACACAGGATATTCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGGTTGGGAGAATCATTGTGAGATCAGCTTACACAGGATATTCTGT  600

seq1  TAACTTCTTTGAGATAGGATCTCGTGTTTCCTAGACTAGCTATATAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTCTTTGAGATAGGATCTCGTGTTTCCTAGACTAGCTATATAGCCA  650

seq1  AGGCTAGCCTTCAGCCCTGATCCTCCTGCATTTATCTCCCAAATACTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGCCTTCAGCCCTGATCCTCCTGCATTTATCTCCCAAATACTAGA  700

seq1  ATTCCTGGCAGGCACTTCCACTGCAGGCTTCTGAAAATTTTAATCACAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTGGCAGGCACTTCCACTGCAGGCTTCTGAAAATTTTAATCACAAA  750

seq1  ATATATTATTGTTGTTTATAGATACTATGTTTGTACAGCAAATAGCTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTATTGTTGTTTATAGATACTATGTTTGTACAGCAAATAGCTAGA  800

seq1  AGTTATTTGTCATACAAAAACACAACAGTACGCCCTTGGATAACATGCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTTGTCATACAAAAACACAACAGTACGCCCTTGGATAACATGCCC  850

seq1  CCAGTTCTCCATGCCCATCCCCAGCATCCACCATCCTGCTTTCTAACCCT  900
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCAGTTCTCCATGCCCAT-CCCAGCATCCACCATCCTGCTTTCTAACCCT  899

seq1  ATGATCCTGACTGCCTCAAATCCTACACATAAGTGGATCGTTTGTTTACT  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATGATCCTGACTGCCTCAAATCCTACACATAAGTGGATCG-TTGTTTACT  948

seq1  TGCCCTTTGCTGCCTGGTTTACTGCACTTATAATATGATCTGGTGCCTTG  1000
      ||||||||||||||||| ||||||||||||||||||||||||| ||| ||
seq2  TGCCCTTTGCTGCCTGG-TTACTGCACTTATAATATGATCTGG-GCC-TG  995

seq1  ATGCTGATCTAAATGGCAAAGTGTCCTTTTTTATGACTGAAGAG-TTTTC  1049
      |||||||||| |||||| ||||||| ||||||||||||| |||| |||||
seq2  ATGCTGATCT-AATGGC-AAGTGTCTTTTTTTATGACTG-AGAGTTTTTC  1042

seq1  TACTCTATAGAGAGAAGGATTATAAATATAT  1080
      |||| |||||| || |||||||| |||||||
seq2  TACTTTATAGA-AG-AGGATTAT-AATATAT  1070


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