BAC Information

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BAC

Clone NameB6Ng01-138M11
Chromosome1 (Build37)
Map Location 139,625,880 - 139,825,055
singlet/doubletdoublet
Overlap geneLOC100043143
Upstream geneLOC667686, EG623818, Nr5a2, Rnu7-ps3, LOC100042567
Downstream genePtprc, LOC100042596, Atp6v1g3, LOC100042600, Nek7, LOC545363, LOC667745, Lhx9, 2310009B15Rik, 1700019P21Rik, LOC100042623
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138M11.bB6Ng01-138M11.g
ACCDH937940DH937941
length9481,138
definitionDH937940|Mus musculus domesticus DNA, BAC clone: B6Ng01-138M11, 5' end.DH937941|Mus musculus domesticus DNA, BAC clone: B6Ng01-138M11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,824,106 - 139,825,055)(139,625,880 - 139,627,051)
sequence
gaattcttactctaggatcaacatctctactaagctcgggattcttttgc
cttcttaatcacgcgcttcaacaaataaaatatcttaccgttgcctgtct
tttttcttttttttttttcccccttttacagcctgcctgaaatactcttc
ggttaaataatatttgttaggctttgatgcaatcaagtgaaatttgagtc
ttcggagcgattcagcctcgcctcgtggagaccgcacatgtgtgtcagct
ttgagtttttctcaccagtgttttacacatgaaatctatttttccttgag
aaaatggaatctttgtgtctttgtctggaaggctcgctgtgctcaggcgt
gttccggcaggagctgtgactgccaaggccctgggggaggggcctggcag
tcatttgtcagctgtcctgcatctgtaatttctggccactcagcactatc
agagtcttagaaacggggcccgaagggtgggggaaagagcttgtcattga
tgaaagacaaaccccaaataactgcctgatgttgatgaccaaagggaaga
gagagtatgaaaaacttttattgtgtcctttaatgaaaaggattttcatt
tgaaatagctaatttatgaaattgcacatggtaacatttccagatctcag
tctagaaaggccgtgtccatattgtgttaccaatttcactgcttttacct
tggcaagcgctcctgaaagtattttaattttctgccattgacttctggtt
atttctgctcttgtgcccttgtaacaaaactgacagcacaattaaacatc
tgcattttaaaactgggtttctcccctgactattttgctttgcttctaaa
tttccagatgttttgggttctttatgattttaatgtatgcaaatacattt
gcttatactttagagaaatggagagggagagagggagggggagggaga
gaattcaagtcttatacctgacaacacacagggaattggggttactagat
gtcaccattcatgcttttgtagaaaagcatagaaataaatcattttctaa
aataatcatgtaataactagaaatgggactggggtggtagttgcagcagt
tcttccagaggacccaggttcaatttccaggacccacactgcaaatccac
aaccagcaaaacttcattactacaggatccacatggtgcacaggcaaaac
atgcaggaaaaacacataaaataaatgaacaaaactaaacaaaatgtgtg
ctttttgtgtttaaaatgagacaaaagttttctaatacactaagaagtta
ctaatagttttagataatattttaagtaaaatgcttagtattaacactac
aaacatgggaagaaactacaaatagaagcagaaaataagagcacatcaag
ccaagtccccagaggattcagcctagtgaatgttgtgtgtctacagttta
aaggcttctcagtgatctttcctatccgtcactgggactgggtttcagac
agttgcgagcagatagacaagtgctaaggattaaacttgtaattgcaccc
agtgaccaccactgagctatctctccaggtccttaattagtatggaatag
aataaactaccacaactaaccaaaacagaaaggcaaaataattatattac
atgaaagttgatgcagctaaaacaatagaacctgttgataatgaggtaat
tttacaattttcatgtcagttttggagcgaagcaccgtgaagacactagt
tcaagcctgattcaacttctgactcaaaaggctgctctgagccagtcact
gatatgcccttccacaattaatagagattagtgatacttcatttcccaga
gaatcacagggaaacaccaaccattttaaatggaagttatttttatgaga
tgtgattttatttcagttttcttttttaatgtgtctatgctaatatgatg
actcatatatatgaatgcaagggcaaaaataaaattaaaaaatttaaacc
acgaagcgtataagtttggtcatagccttattactgcgaatattcttttc
caattcaagcttagttactggcatgtagctcacgcaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_139824106_139825055
seq2: B6Ng01-138M11.b_48_995 (reverse)

seq1  TCTCCCT-CCCCTCCCTCTCTTCCCTCTCCATTTTCTCTAAAGTATAAGC  49
      ||||||| |||||||||||| |||||||||| ||||||||||||||||||
seq2  TCTCCCTCCCCCTCCCTCTC-TCCCTCTCCA-TTTCTCTAAAGTATAAGC  48

seq1  AAATGTATTTGCATACATTAAAATCATAAAGAACCCAAAACATCTGGAAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTATTTGCATACATTAAAATCATAAAGAACCCAAAACATCTGGAAA  98

seq1  TTTTAGAAGCAAAGCAAAATAGTCAGGGGAGAAACCCAGTTTTAAAATGC  149
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTAGAAGCAAAGCAAAATAGTCAGGGGAGAAACCCAGTTTTAAAATGC  147

seq1  AGATGTTTAATTGTGCTGTCAGTTTTGTTACAAGGGCACAAGAGCAGAAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTTTAATTGTGCTGTCAGTTTTGTTACAAGGGCACAAGAGCAGAAA  197

seq1  TAACCAGAAGTCAATGGCAGAAAATTAAAATACTTTCAGGAGCGCTTGCC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGAAGTCAATGGCAGAAAATTAAAATACTTTCAGGAGCGCTTGCC  247

seq1  AAGGTAAAAGCAGTGAAATTGGTAACACAATATGGACACGGCCTTTCTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAAAAGCAGTGAAATTGGTAACACAATATGGACACGGCCTTTCTAG  297

seq1  ACTGAGATCTGGAAATGTTACCATGTGCAATTTCATAAATTAGCTATTTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGATCTGGAAATGTTACCATGTGCAATTTCATAAATTAGCTATTTC  347

seq1  AAATGAAAATCCTTTTCATTAAAGGACACAATAAAAGTTTTTCATACTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAATCCTTTTCATTAAAGGACACAATAAAAGTTTTTCATACTCT  397

seq1  CTCTTCCCTTTGGTCATCAACATCAGGCAGTTATTTGGGGTTTGTCTTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCCTTTGGTCATCAACATCAGGCAGTTATTTGGGGTTTGTCTTTC  447

seq1  ATCAATGACAAGCTCTTTCCCCCACCCTTCGGGCCCCGTTTCTAAGACTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGACAAGCTCTTTCCCCCACCCTTCGGGCCCCGTTTCTAAGACTC  497

seq1  TGATAGTGCTGAGTGGCCAGAAATTACAGATGCAGGACAGCTGACAAATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGTGCTGAGTGGCCAGAAATTACAGATGCAGGACAGCTGACAAATG  547

seq1  ACTGCCAGGCCCCTCCCCCAGGGCCTTGGCAGTCACAGCTCCTGCCGGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCAGGCCCCTCCCCCAGGGCCTTGGCAGTCACAGCTCCTGCCGGAA  597

seq1  CACGCCTGAGCACAGCGAGCCTTCCAGACAAAGACACAAAGATTCCATTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCTGAGCACAGCGAGCCTTCCAGACAAAGACACAAAGATTCCATTT  647

seq1  TCTCAAGGAAAAATAGATTTCATGTGTAAAACACTGGTGAGAAAAACTCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGGAAAAATAGATTTCATGTGTAAAACACTGGTGAGAAAAACTCA  697

seq1  AAGCTGACACACATGTGCGGTCTCCACGAGGCGAGGCTGAATCGCTCCGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGACACACATGTGCGGTCTCCACGAGGCGAGGCTGAATCGCTCCGA  747

seq1  AGACTCAAATTTCACTTGATTGCATCAAAGCCTAACAAATATTATTTAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCAAATTTCACTTGATTGCATCAAAGCCTAACAAATATTATTTAAC  797

seq1  CGAAGAGTATTTCAGGCAGGCTGTAAAAGGGGGAAAAAAAAAAAAGAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGAGTATTTCAGGCAGGCTGTAAAAGGGGGAAAAAAAAAAAAGAAAA  847

seq1  AAGACAGGCAACGGTAAGATATTTTATTTGTTGAAGCGCGTGATTAAGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGGCAACGGTAAGATATTTTATTTGTTGAAGCGCGTGATTAAGAA  897

seq1  GGCAAAAGAATCCCGAGCTTAGTAGAGATGTTGATCCTAGAGTAAGAATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAAGAATCCCGAGCTTAGTAGAGATGTTGATCCTAGAGTAAGAATT  947

seq1  C  950
      |
seq2  C  948

seq1: chr1_139625880_139627051
seq2: B6Ng01-138M11.g_69_1206

seq1  GAATTCAAGTCTTATACCTGACAACACACAGGGAATTGGGGTTACTAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTCTTATACCTGACAACACACAGGGAATTGGGGTTACTAGAT  50

seq1  GTCACCATTCATGCTTTTGTAGAAAAGCATAGAAATAAATCATTTTCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCATTCATGCTTTTGTAGAAAAGCATAGAAATAAATCATTTTCTAA  100

seq1  AATAATCATGTAATAACTAGAAATGGGACTGGGGTGGTAGTTGCAGCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATCATGTAATAACTAGAAATGGGACTGGGGTGGTAGTTGCAGCAGT  150

seq1  TCTTCCAGAGGACCCAGGTTCAATTTCCAGGACCCACACTGCAAATCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAGAGGACCCAGGTTCAATTTCCAGGACCCACACTGCAAATCCAC  200

seq1  AACCAGCAAAACTTCATTACTACAGGATCCACATGGTGCACAGGCAAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGCAAAACTTCATTACTACAGGATCCACATGGTGCACAGGCAAAAC  250

seq1  ATGCAGGAAAAACACATAAAATAAATGAACAAAACTAAACAAAATGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGAAAAACACATAAAATAAATGAACAAAACTAAACAAAATGTGTG  300

seq1  CTTTTTGTGTTTAAAATGAGACAAAAGTTTTCTAATACACTAAGAAGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTGTTTAAAATGAGACAAAAGTTTTCTAATACACTAAGAAGTTA  350

seq1  CTAATAGTTTTAGATAATATTTTAAGTAAAATGCTTAGTATTAACACTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAGTTTTAGATAATATTTTAAGTAAAATGCTTAGTATTAACACTAC  400

seq1  AAACATGGGAAGAAACTACAAATAGAAGCAGAAAATAAGAGCACATCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGGGAAGAAACTACAAATAGAAGCAGAAAATAAGAGCACATCAAG  450

seq1  CCAAGTCCCCAGAGGATTCAGCCTAGTGAATGTTGTGTGTCTACAGTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGTCCCCAGAGGATTCAGCCTAGTGAATGTTGTGTGTCTACAGTTTA  500

seq1  AAGGCTTCTCAGTGATCTTTCCTATCCGTCACTGGGACTGGGTTTCAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTCTCAGTGATCTTTCCTATCCGTCACTGGGACTGGGTTTCAGAC  550

seq1  AGTTGCGAGCAGATAGACAAGTGCTAAGGATTAAACTTGTAATTGCACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGCGAGCAGATAGACAAGTGCTAAGGATTAAACTTGTAATTGCACCC  600

seq1  AGTGACCACCACTGAGCTATCTCTCCAGGTCCTTAATTAGTATGGAATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACCACCACTGAGCTATCTCTCCAGGTCCTTAATTAGTATGGAATAG  650

seq1  AATAAACTACCACAACTAACCAAAACAGAAAGGCAAAATAATTATATTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACTACCACAACTAACCAAAACAGAAAGGCAAAATAATTATATTAC  700

seq1  ATGAAAGTTGATGCAGCTAAAACAATAGAACCTGTTGATAATGAGGTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGTTGATGCAGCTAAAACAATAGAACCTGTTGATAATGAGGTAAT  750

seq1  TTTACAATTTTCATGTCAGTTTTGGAGCGAAGCACCGTGAAGACACTAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAATTTTCATGTCAGTTTTGGAGCGAAGCACCGTGAAGACACTAGT  800

seq1  TCAAGCCTGATTCAACTTCTGACTCAAAAGGCTGCTCTGAGCCAGTCACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCCTGATTCAACTTCTGACTCAAAAGGCTGCTCTGAGCCAGTCACT  850

seq1  GATATGCCCTTCCAACAAATTAATAGAGATTAGTGATACTTCATTTCCCA  900
      ||||||||||||||   |||||||||||||||||||||||||||||||||
seq2  GATATGCCCTTCCA--CAATTAATAGAGATTAGTGATACTTCATTTCCCA  898

seq1  GAGAAATCACAGGGGAAACACCAACCAATTTTAAATGGAAGTTATTTTTA  950
      ||| ||||||| |||||||||||||| |||||||||||||||||||||||
seq2  GAG-AATCACA-GGGAAACACCAACC-ATTTTAAATGGAAGTTATTTTTA  945

seq1  TGAAGATGTGAATTTTTATTTCAGTTTTCTTTTTTTAATGGTGTCTTATG  1000
      || ||||||||  |||||||||||||||| ||||||||| ||||| ||||
seq2  TG-AGATGTGA--TTTTATTTCAGTTTTC-TTTTTTAAT-GTGTC-TATG  989

seq1  CTATATTGATGACTTCATATATTAATGAATGTATAGTGCAAAAAATAAAA  1050
      |||   ||||||| ||||||||  ||||||| | || |||||||   |||
seq2  CTAATATGATGAC-TCATATAT--ATGAATGCA-AGGGCAAAAA--TAAA  1033

seq1  ATTAAAAAATTTTAAAACAACAGAAGCAGTATAAAGTTTGGTCATAGCCT  1100
      ||||||||||||  |||| || ||||| |||| |||||||||||||||||
seq2  ATTAAAAAATTT--AAACCAC-GAAGC-GTAT-AAGTTTGGTCATAGCCT  1078

seq1  TATTTCACTGCAGAAATAATCTTTTTTCAATTTCAAAAGCTTTTAGTTAG  1150
      ||||  |||||   |||| || |||| |||||    ||||  ||||||| 
seq2  TATT--ACTGC--GAATATTC-TTTTCCAATT---CAAGC--TTAGTTA-  1117

seq1  CTGGGCATGTAGCTCAGGCAAG  1172
      || ||||||||||||| |||||
seq2  CT-GGCATGTAGCTCACGCAAG  1138