BAC Information

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BAC

Clone NameB6Ng01-138N09
Chromosome1 (Build37)
Map Location 114,411,753 - 114,540,178
singlet/doubletdoublet
Overlap genenone
Upstream geneEG666578, Dsel, LOC547247, EG626897, LOC666615
Downstream geneLOC666635
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138N09.bB6Ng01-138N09.g
ACCDH937980DH937981
length1,2171,166
definitionDH937980|Mus musculus domesticus DNA, BAC clone: B6Ng01-138N09, 5' end.DH937981|Mus musculus domesticus DNA, BAC clone: B6Ng01-138N09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,411,753 - 114,412,975)(114,538,995 - 114,540,178)
sequence
gaattcacaataaataaaaatacgtgtaataagtttttttaatgttttct
gcataagagcaatgccatcactaactcagtttacctttaaagataggaca
gtttgtttcttttatgtccttgctacaaagtacattggatgagcaacagc
aagtgtgtgtggaggatggttgtgcagaggaagcactacagaataaagca
tattttaaattgcaggcctatgaggaattcaattctacttgtccttgaaa
aaaggaaggggcagtgtgttggataataattgttctgtcttccttaaagg
cagagcacttggcctataggacattgattcatcttgaaattgtatctctt
tcagccccatggcatacttcactcttgaaagtgacatgggacaagaagag
atgaatgtgtacaggctgtggagccctgaggccaatatcgatgagacagt
gttcttggaagatttgctccctgtagattttctccatcacagaaatggca
tcctaggaccacagcaagttaccaaactatttgtacaatcaacccatagt
aagtgacatttatcctgcttcaaaaaggaaaggaaacattatacagttcc
agaattaacagactgtgccctgggtgaagctagctatgactccatacaca
gaaccatttatttaagcatctttagcatacagaatttcagcccatatatc
tgttcactttttaattcaatttaaatttttttgccaagaaatcacactaa
attttcttgatgtctgcagccaaatgcatacttcctatttctgcataaca
ggtattttctgtctctatgagtcaagttggtatttgctgtccctccgtac
caatgaactattcctagccctgtataccaagtagaaatttcccatcccta
cattttattactctggaaaaaaattccctatgtctacacaacttgtaaat
tcatttttcactgtgataaggttaaatgttatttttgttcccatcaagaa
acactaatctagaaacaagattcagtcttccccactattttgcctaccac
accagcacatttcttgccagcacttattcattcagtactttctgccacat
gttgaatcctatacacttgtctacctctatgcagaccaccagaggccatt
ttatgggtcagtctatgctgatttgttggtggaacacctttatcccagaa
ttcaaggcagtaggcag
gaattctgctcctgcaggaaattgcaggtgcagcaaggcagaagatcacc
acctaggttggaagactccaccctaggtcaggggaagaccaactgtggca
acaattaaaatctgtttagcctgcttaaggatgggggaagggcacagcag
tatatatccatgctacaatggctagctttctgtgggagtgctggtgatcc
atggtttaaatcctcttgcttgtatcatgaaatcgcttcaaactgagccc
atatttctaacctttgaacaaactgattttaatagtagtaaaatccgtga
tgaattcttgacttgtccttcatagtagcaaatccttatccattctgtat
gtgtcacaacttaaaaacagacaggaaagaagtaaaagtgtgtttacctg
ctttcgacacacttggtgaatttgatttttttccttttagtatgaaagct
gaacaaaatcaacaacactggacacagacaaagactttatttgtctgagt
aagggttggaggagatggatgcgctccttggaacttcaggacatgtgaga
agaaaggaactcaatccaaataacatagaatttgagaaacttgcagagca
tcataggatgcccatgctccacttagtatgaaagtgataatgatatgcat
aatacccaatattaatattattttaatagaatactgcagtaatagaaatg
cttactagtgctatgggagttcaagtacaagtgatttagctttataaaat
aaagtttatttagaaaagaatttgagaataaaacaatggtttgactgaca
ggtgaccttggaatttagcttactcggaactctttccttcaacaagatgt
aaactttagactattcattacatttcttttccatttctttcccttctcta
ttcttccatccttctgtttctcattttttcctacatttgtttcttcttta
atttgtttgtgctgtacacatgcatgcactttatattggagtaagctggt
ctgtgcaaagcatatgaagagcaaaagtcagcacaatatatcttttacag
ttaaatgtactataattttttggaacagatttctactgacctaacttggt
tgacacctgaatctccagttagattgatctgttcaacaattggggggtta
cacgagttcatctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_114411753_114412975
seq2: B6Ng01-138N09.b_41_1257

seq1  GAATTCACAATAAATAAAAATACGTGTAATAAGTTTTTTTAATGTTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAATAAATAAAAATACGTGTAATAAGTTTTTTTAATGTTTTCT  50

seq1  GCATAAGAGCAATGCCATCACTAACTCAGTTTACCTTTAAAGATAGGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAGAGCAATGCCATCACTAACTCAGTTTACCTTTAAAGATAGGACA  100

seq1  GTTTGTTTCTTTTATGTCCTTGCTACAAAGTACATTGGATGAGCAACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTCTTTTATGTCCTTGCTACAAAGTACATTGGATGAGCAACAGC  150

seq1  AAGTGTGTGTGGAGGATGGTTGTGCAGAGGAAGCACTACAGAATAAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGTGTGGAGGATGGTTGTGCAGAGGAAGCACTACAGAATAAAGCA  200

seq1  TATTTTAAATTGCAGGCCTATGAGGAATTCAATTCTACTTGTCCTTGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAATTGCAGGCCTATGAGGAATTCAATTCTACTTGTCCTTGAAA  250

seq1  AAAGGAAGGGGCAGTGTGTTGGATAATAATTGTTCTGTCTTCCTTAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGGGGCAGTGTGTTGGATAATAATTGTTCTGTCTTCCTTAAAGG  300

seq1  CAGAGCACTTGGCCTATAGGACATTGATTCATCTTGAAATTGTATCTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCACTTGGCCTATAGGACATTGATTCATCTTGAAATTGTATCTCTT  350

seq1  TCAGCCCCATGGCATACTTCACTCTTGAAAGTGACATGGGACAAGAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCCATGGCATACTTCACTCTTGAAAGTGACATGGGACAAGAAGAG  400

seq1  ATGAATGTGTACAGGCTGTGGAGCCCTGAGGCCAATATCGATGAGACAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATGTGTACAGGCTGTGGAGCCCTGAGGCCAATATCGATGAGACAGT  450

seq1  GTTCTTGGAAGATTTGCTCCCTGTAGATTTTCTCCATCACAGAAATGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTGGAAGATTTGCTCCCTGTAGATTTTCTCCATCACAGAAATGGCA  500

seq1  TCCTAGGACCACAGCAAGTTACCAAACTATTTGTACAATCAACCCATAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGACCACAGCAAGTTACCAAACTATTTGTACAATCAACCCATAGT  550

seq1  AAGTGACATTTATCCTGCTTCAAAAAGGAAAGGAAACATTATACAGTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACATTTATCCTGCTTCAAAAAGGAAAGGAAACATTATACAGTTCC  600

seq1  AGAATTAACAGACTGTGCCCTGGGTGAAGCTAGCTATGACTCCATACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAACAGACTGTGCCCTGGGTGAAGCTAGCTATGACTCCATACACA  650

seq1  GAACCATTTATTTAAGCATCTTTAGCATACAGAATTTCAGCCCATATATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCATTTATTTAAGCATCTTTAGCATACAGAATTTCAGCCCATATATC  700

seq1  TGTTCACTTTTTAATTCAATTTAAATTTTTTTGCCAAGAAATCACACTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCACTTTTTAATTCAATTTAAATTTTTTTGCCAAGAAATCACACTAA  750

seq1  ATTTTCTTGATGTCTGCAGCCAAATGCATACTTCCTATTTCTGCATAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTGATGTCTGCAGCCAAATGCATACTTCCTATTTCTGCATAACA  800

seq1  GGTATTTTCTGTCTCTATGAGTCAAGTTGGTATTTGCTGTCCCTCCGTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTTCTGTCTCTATGAGTCAAGTTGGTATTTGCTGTCCCTCCGTAC  850

seq1  CAATGAACTATTCCTAGCCCTGTATACCAAGTAGAAATTTCCCATCCCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAACTATTCCTAGCCCTGTATACCAAGTAGAAATTTCCCATCCCTA  900

seq1  CATTTTATTACTCTGGAAAAAAAATTCCCTATGTCTACAACAACTTGTAA  950
      |||||||||||||||| ||||||||||||||||||||| |||||||||||
seq2  CATTTTATTACTCTGG-AAAAAAATTCCCTATGTCTAC-ACAACTTGTAA  948

seq1  ATTCATTTTTCACTGTGATAAGGTTAAATGTTATTTTTGTTCCCATCAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTTTCACTGTGATAAGGTTAAATGTTATTTTTGTTCCCATCAAG  998

seq1  AAACACTAATCTAGAAAACAAGATTCAGTCTCCACCAACTATTTTGCCTA  1050
      |||||||||||||| |||||||||||||||| | || |||||||||||||
seq2  AAACACTAATCTAG-AAACAAGATTCAGTCTTC-CCCACTATTTTGCCTA  1046

seq1  CCACAACCAGCAACATATC-TGCCAGCACTTATTCA-TCAGTAC-TTCTG  1097
      |||| |||||| |||| || |||||||||||||||| ||||||| |||||
seq2  CCAC-ACCAGC-ACATTTCTTGCCAGCACTTATTCATTCAGTACTTTCTG  1094

seq1  CCACATGTTGAAATCCTATACACTTGTCTACCTCTATGCAGACACAACCA  1147
      |||||||||| ||||||||||||||||||||||||||||||  || ||||
seq2  CCACATGTTG-AATCCTATACACTTGTCTACCTCTATGCAG--ACCACCA  1141

seq1  GAGGGCCATTTTAATGGGTCAAGTCTATGCT-AGTTGGTGGTGGAGCATA  1196
      || ||||||||| ||||||| |||||||||| | ||| ||||||| ||  
seq2  GA-GGCCATTTT-ATGGGTC-AGTCTATGCTGATTTGTTGGTGGAACA--  1186

seq1  CCCTTTATCCCAGCATTCAAG-----AGGCAG  1223
       |||||||||||| |||||||     ||||||
seq2  -CCTTTATCCCAGAATTCAAGGCAGTAGGCAG  1217

seq1: chr1_114538995_114540178
seq2: B6Ng01-138N09.g_69_1234 (reverse)

seq1  CAGAGATACACACCTGTAACCCCCCAAATTGTTGGACAGATACAATCATA  50
      |||||||  || | ||||||||||| |||||||| |||||| |||||  |
seq2  CAGAGATGAACTCGTGTAACCCCCC-AATTGTTGAACAGAT-CAATCTAA  48

seq1  CCTTGGAGATTCAGTGGTCAACCAAGTCTAGGTTCAGTTAGAAATTCTGT  100
      |  |||||||||||  ||||||||||| |||| |||| |||||| |||||
seq2  C--TGGAGATTCAGGTGTCAACCAAGT-TAGG-TCAG-TAGAAA-TCTGT  92

seq1  TTCAAAAAAAATATATAGTAACATTTAAATTGTAAAAGATATATTGTGCT  150
      | |||||||    |||||| |||||| || ||||||||||||||||||||
seq2  TCCAAAAAA---TTATAGT-ACATTT-AACTGTAAAAGATATATTGTGCT  137

seq1  GACTTCTGCTCTTCATATGCTTTTGCACAGACCAGCTTACTCCAATATAA  200
      ||||| |||||||||||||| ||||||||||||||||||||||||||| |
seq2  GACTTTTGCTCTTCATATGC-TTTGCACAGACCAGCTTACTCCAATAT-A  185

seq1  AAGTGCATGCATGTGTACAGCACAAACAAAATTAAAGAAGAAACAAAATG  250
      ||||||||||||||||||||||||||| |||||||||||||||| |||||
seq2  AAGTGCATGCATGTGTACAGCACAAAC-AAATTAAAGAAGAAAC-AAATG  233

seq1  TAGGAAAAAATGAGAAACAGAAGGATGGAAGAATAGAGAAAGGGAAAGAA  300
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TAGGAAAAAATGAGAAACAGAAGGATGGAAGAATAGAG-AAGGGAAAGAA  282

seq1  ATGGAAAAGAAATGTAATGAATAGTCTAAAGTTTACATCTTGTTGAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAAGAAATGTAATGAATAGTCTAAAGTTTACATCTTGTTGAAGGA  332

seq1  AAGAGTTCCTGAGTAAGCTAAATTCCAAGGTCACCTGTCAGTC-AACCAT  399
      ||||||||| ||||||||||||||||||||||||||||||||| ||||||
seq2  AAGAGTTCC-GAGTAAGCTAAATTCCAAGGTCACCTGTCAGTCAAACCAT  381

seq1  TGTTTTATTCTCAAATTCTTTTCTAAATAAACTTTATTTTATAAAGCTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTATTCTCAAATTCTTTTCTAAATAAACTTTATTTTATAAAGCTAA  431

seq1  ATCACTTGTACTTGAACTCCCATAGCACTAGTAAGCATTTCTATTACTGC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACTTGTACTTGAACTCCCATAGCACTAGTAAGCATTTCTATTACTGC  481

seq1  AGTATTCTATTAAAATAATATTAATATTGGGTATTATGCATATCATTATC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTCTATTAAAATAATATTAATATTGGGTATTATGCATATCATTATC  531

seq1  ACTTTCATACTAAGTGGAGCATGGGCATCCTATGATGCTCTGCAAGTTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCATACTAAGTGGAGCATGGGCATCCTATGATGCTCTGCAAGTTTC  581

seq1  TCAAATTCTATGTTATTTGGATTGAGTTCCTTTCTTCTCACATGTCCTGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTCTATGTTATTTGGATTGAGTTCCTTTCTTCTCACATGTCCTGA  631

seq1  AGTTCCAAGGAGCGCATCCATCTCCTCCAACCCTTACTCAGACAAATAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAAGGAGCGCATCCATCTCCTCCAACCCTTACTCAGACAAATAAA  681

seq1  GTCTTTGTCTGTGTCCAGTGTTGTTGATTTTGTTCAGCTTTCATACTAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGTCTGTGTCCAGTGTTGTTGATTTTGTTCAGCTTTCATACTAAA  731

seq1  AGGAAAAAAATCAAATTCACCAAGTGTGTCGAAAGCAGGTAAACACACTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAAATCAAATTCACCAAGTGTGTCGAAAGCAGGTAAACACACTT  781

seq1  TTACTTCTTTCCTGTCTGTTTTTAAGTTGTGACACATACAGAATGGATAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCTTTCCTGTCTGTTTTTAAGTTGTGACACATACAGAATGGATAA  831

seq1  GGATTTGCTACTATGAAGGACAAGTCAAGAATTCATCACGGATTTTACTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGCTACTATGAAGGACAAGTCAAGAATTCATCACGGATTTTACTA  881

seq1  CTATTAAAATCAGTTTGTTCAAAGGTTAGAAATATGGGCTCAGTTTGAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAAAATCAGTTTGTTCAAAGGTTAGAAATATGGGCTCAGTTTGAAG  931

seq1  CGATTTCATGATACAAGCAAGAGGATTTAAACCATGGATCACCAGCACTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTTCATGATACAAGCAAGAGGATTTAAACCATGGATCACCAGCACTC  981

seq1  CCACAGAAAGCTAGCCATTGTAGCATGGATATATACTGCTGTGCCCTTCC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAAAGCTAGCCATTGTAGCATGGATATATACTGCTGTGCCCTTCC  1031

seq1  CCCATCCTTAAGCAGGCTAAACAGATTTTAATTGTTGCCACAGTTGGTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCCTTAAGCAGGCTAAACAGATTTTAATTGTTGCCACAGTTGGTCT  1081

seq1  TCCCCTGACCTAGGGTGGAGTCTTCCAACCTAGGTGGTGATCTTCTGCCT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGACCTAGGGTGGAGTCTTCCAACCTAGGTGGTGATCTTCTGCCT  1131

seq1  TGCTGCACCTGCAATTTCCTGCAGGAGCAGAATTC  1184
      |||||||||||||||||||||||||||||||||||
seq2  TGCTGCACCTGCAATTTCCTGCAGGAGCAGAATTC  1166