BAC Information

Click to search

BAC

Clone NameB6Ng01-138O04
Chromosome1 (Build37)
Map Location 188,630,990 - 188,766,319
singlet/doubletdoublet
Overlap geneLOC666832
Upstream geneLOC677785, Lyplal1, Tgfb2, Rrp15
Downstream geneLOC100042375, D1Pas1, Spata17, Gpatch2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-138O04.bB6Ng01-138O04.g
ACCDH938017DH938018
length1,1251,095
definitionDH938017|Mus musculus domesticus DNA, BAC clone: B6Ng01-138O04, 5' end.DH938018|Mus musculus domesticus DNA, BAC clone: B6Ng01-138O04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(188,765,193 - 188,766,319)(188,630,990 - 188,632,101)
sequence
gaattcatcttctgcattgtggcagtgttagaaaatatacggtacagtgt
gcttgtcatgatgactttcttccccaaatatagacctgtgatttattcat
taaatatatctgacatcttgactaaattcctagctcactgtaggatgagg
ctgtctctcattcatctttctattctgagcactgacacaggactgggccc
tgactgaacgctgtgactctgtgtaagtctgtctgaaggcttattatttc
tttgattaacgagaggtttagctgagatgatcagaaagttctgcgctgat
gaattatgattgaggatgccatacacacactctaaagttggaatcgtggt
aggtctttctaaaaaaaaaatagtgtaaaaatttgacaaaataaatagca
tagtcaacaaactgtgcagggagaagcgcttgccatgggctcaaattaaa
gacagacaaaatgaagaagactttgaaatgtgtatccatcgatgtgaaac
atttctaggaaggggaaagggacagcagtgctttagcccgcaaaaatagc
ctggactacgataaaagtttgtttggagaatggctgattagttcaaggtg
gctggactccactctgtaggtgtaatggaagatgaaaatcacactaatat
taaaagctggatttgagaggaaagaaagacaaggccaggccatggtgcat
gggcaagccacagcagaggaactgggatttgagctgaatcttgggaaatg
agaaggatttgaggactgggagaggataaaggttgaatttaatactgagc
aagtgtatgtggtagatatatttaggtcaaggggacaatttgattaaaac
gaagcgtttgggagaaaagattgtgaaatgatagacgattacaggggggg
gggcattgcgtacctgagactttagctgtttctcgtgtcctgggtaactc
gagctatgcaagggctccggaatgagaggcaggagaggcggagtcatgca
gaccacaagatggcacaaagactgcacctagcagttatagaagacatgta
cctagaaccaagcatggagtattaataattcgaagaggagaaccttgcag
gtcaagttaacagcttatagaatga
gaattctaaggctgcaaaacagctggaaagaaaaactcaaatagtccacg
atgtgacccttgagctgaagatgggtcaaggtgaaggtcatgggtactgg
gggttgtggctggatgcaggttttgagaagaagtcaaagaaggatgaaga
acatgcgtgtgtactcgagactggcagaagctcagagctggagggattcg
ggttcctgcctgtagggccagctgggtgattggctccatctgctttagtc
ctggtggcagctaaaaccagaaatcaaaactcatgacagccaaacagttg
cgtggggtgttgtttagctttccggtgtgtcccttttccctgctctctcc
tttgacgttcctcggctaccctccttggtccatgttctcccttgttttca
cggatgctgcgttcacctcctccgtgctagcagcccagagcgcttcccat
tcgctggcacaaccaaagcccttgcctggaagagtcatcaagagaatgct
tatttgaggcacgggtcgggagcagagttcaacccttttccattgctctc
catgctggaatggtttgtgtatttgtttccagttttcatgaagcagattt
ttttttttttcatttggaaacttctgcgtttcactcataagtgcctgttc
cttccctgtcgctgctctggagaagcaggttcttttaagaaaaccctgag
tcaccctcctataatgcctggcaagagtccttagaacaactctgtcattt
taattaatttacaaacgtgggttttgttttgggctgtagctggatatatt
tgatacaaaatggtctgattatagccatggcttaacacggtaagcaccga
tgtaatgatgacattgatttgtaccggagaggacatattatagaaatgtt
tgtagatgctttcgcagacagagggatgataaatcttgtcaacaaatctt
cttgggctggcaagatgggctacaggtaggtgcttgctacgaagctgtga
ccggagtcattccaggaacccacacagtgagaaagaagcactttgcacaa
ggtattactgcatatggccatgcccaatgccctcccgacgaataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_188765193_188766319
seq2: B6Ng01-138O04.b_42_1166 (reverse)

seq1  TCATTCTATAAGCCCTGTTA--CTGACCCCTGCCAGG-TCTCCTCTCTGA  47
      ||||||||||||  ||||||   |||  ||||| ||| ||||||||  ||
seq2  TCATTCTATAAG--CTGTTAACTTGA--CCTGCAAGGTTCTCCTCTTCGA  46

seq1  TTATTTATTACCTCATGCTTGG-TCTAGGTAACATGTTCCTTCTATAACT  96
       |  ||| |||  ||||||||| ||||||| ||||||  |||||||||||
seq2  ATTATTAATACTCCATGCTTGGTTCTAGGT-ACATGT--CTTCTATAACT  93

seq1  GCTA-GTGCAGTCTTTGTGCCATCTTGT-GTCTGCCATGACTCCGCCTCT  144
      |||| ||||||||||||||||||||||| ||||| |||||||||||||||
seq2  GCTAGGTGCAGTCTTTGTGCCATCTTGTGGTCTG-CATGACTCCGCCTCT  142

seq1  CCTGCCTCTCATTCCGGAGCCCCTTGCATAGCTCGAGTTACCCAGGACAC  194
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCTGCCTCTCATTCCGGAG-CCCTTGCATAGCTCGAGTTACCCAGGACAC  191

seq1  GAGAAACAGCTAAAGTCTCAGGTACGCAATGCCCCCCCCCCTGTAATCGT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACAGCTAAAGTCTCAGGTACGCAATGCCCCCCCCCCTGTAATCGT  241

seq1  CTATCATTTCACAATCTTTTCTCCCAAACGCTTCGTTTTAATCAAATTGT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATTTCACAATCTTTTCTCCCAAACGCTTCGTTTTAATCAAATTGT  291

seq1  CCCCTTGACCTAAATATATCTACCACATACACTTGCTCAGTATTAAATTC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGACCTAAATATATCTACCACATACACTTGCTCAGTATTAAATTC  341

seq1  AACC-TTATCCTCTCCCAGTCCTCAAATCCTTCTCATTTCCCAAGATTCA  393
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTTATCCTCTCCCAGTCCTCAAATCCTTCTCATTTCCCAAGATTCA  391

seq1  GCTCAAATCCCAGTTCCTCTGCTGTGGCTTGCCCATGCACCATGGCCTGG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAATCCCAGTTCCTCTGCTGTGGCTTGCCCATGCACCATGGCCTGG  441

seq1  CCTTGTCTTTCTTTCCTCTCAAATCCAGCTTTTAATATTAGTGTGATTTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCTTTCTTTCCTCTCAAATCCAGCTTTTAATATTAGTGTGATTTT  491

seq1  CATCTTCCATTACACCTACAGAGTGGAGTCCAGCCACCTTGAACTAATCA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCCATTACACCTACAGAGTGGAGTCCAGCCACCTTGAACTAATCA  541

seq1  GCCATTCTCCAAACAAACTTTTATCGTAGTCCAGGCTATTTTTGCGGGCT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTCTCCAAACAAACTTTTATCGTAGTCCAGGCTATTTTTGCGGGCT  591

seq1  AAAGCACTGCTGTCCCTTTCCCCTTCCTAGAAATGTTTCACATCGATGGA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACTGCTGTCCCTTTCCCCTTCCTAGAAATGTTTCACATCGATGGA  641

seq1  TACACATTTCAAAGTCTTCTTCATTTTGTCTGTCTTTAATTTGAGCCCAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATTTCAAAGTCTTCTTCATTTTGTCTGTCTTTAATTTGAGCCCAT  691

seq1  GGCAAGCGCTTCTCCCTGCACAGTTTGTTGACTATGCTATTTATTTTGTC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCGCTTCTCCCTGCACAGTTTGTTGACTATGCTATTTATTTTGTC  741

seq1  AAATTTTTACACTATTTTTTTTTTAGAAAGACCTACCACGATTCCAACTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTTACACTATTTTTTTTTTAGAAAGACCTACCACGATTCCAACTT  791

seq1  TAGAGTGTGTGTATGGCATCCTCAATCATAATTCATCAGCGCAGAACTTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTGTGTGTATGGCATCCTCAATCATAATTCATCAGCGCAGAACTTT  841

seq1  CTGATCATCTCAGCTAAACCTCTCGTTAATCAAAGAAATAATAAGCCTTC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCATCTCAGCTAAACCTCTCGTTAATCAAAGAAATAATAAGCCTTC  891

seq1  AGACAGACTTACACAGAGTCACAGCGTTCAGTCAGGGCCCAGTCCTGTGT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGACTTACACAGAGTCACAGCGTTCAGTCAGGGCCCAGTCCTGTGT  941

seq1  CAGTGCTCAGAATAGAAAGATGAATGAGAGACAGCCTCATCCTACAGTGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTCAGAATAGAAAGATGAATGAGAGACAGCCTCATCCTACAGTGA  991

seq1  GCTAGGAATTTAGTCAAGATGTCAGATATATTTAATGAATAAATCACAGG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGAATTTAGTCAAGATGTCAGATATATTTAATGAATAAATCACAGG  1041

seq1  TCTATATTTGGGGAAGAAAGTCATCATGACAAGCACACTGTACCGTATAT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATTTGGGGAAGAAAGTCATCATGACAAGCACACTGTACCGTATAT  1091

seq1  TTTCTAACACTGCCACAATGCAGAAGATGAATTC  1127
      ||||||||||||||||||||||||||||||||||
seq2  TTTCTAACACTGCCACAATGCAGAAGATGAATTC  1125

seq1: chr1_188630990_188632101
seq2: B6Ng01-138O04.g_69_1163

seq1  GAATTCTAAGGCTGCAAAACAGCTGGAAAGAAAAACTCAAATAGTCCACG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGGCTGCAAAACAGCTGGAAAGAAAAACTCAAATAGTCCACG  50

seq1  ATGTGACCCTTGAGCTGAAGATGGGTCAAGGTGAAGGTCATGGGTACTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACCCTTGAGCTGAAGATGGGTCAAGGTGAAGGTCATGGGTACTGG  100

seq1  GGGTTGTGGCTGGATGCAGGTTTTGAGAAGAAGTCAAAGAAGGATGAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGTGGCTGGATGCAGGTTTTGAGAAGAAGTCAAAGAAGGATGAAGA  150

seq1  ACATGCGTGTGTACTCGAGACTGGCAGAAGCTCAGAGCTGGAGGGATTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCGTGTGTACTCGAGACTGGCAGAAGCTCAGAGCTGGAGGGATTCG  200

seq1  GGTTCCTGCCTGTAGGGCCAGCTGGGTGATTGGCTCCATCTGCTTTAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCCTGCCTGTAGGGCCAGCTGGGTGATTGGCTCCATCTGCTTTAGTC  250

seq1  CTGGTGGCAGCTAAAACCAGAAATCAAAACTCATGACAGCCAAACAGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGCAGCTAAAACCAGAAATCAAAACTCATGACAGCCAAACAGTTG  300

seq1  CGTGGGGTGTTGTTTAGCTTTCCGGTGTGTCCCTTTTCCCTGCTCTCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGGGTGTTGTTTAGCTTTCCGGTGTGTCCCTTTTCCCTGCTCTCTCC  350

seq1  TTTGACGTTCCTCGGCTACCCTCCTTGGTCCATGTTCTCCCTTGTTTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACGTTCCTCGGCTACCCTCCTTGGTCCATGTTCTCCCTTGTTTTCA  400

seq1  CGGATGCTGCGTTCACCTCCTCCGTGCTAGCAGCCCAGAGCGCTTCCCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATGCTGCGTTCACCTCCTCCGTGCTAGCAGCCCAGAGCGCTTCCCAT  450

seq1  TCGCTGGCACAACCAAAGCCCTTGCCTGGAAGAGTCATCAAGAGAATGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCTGGCACAACCAAAGCCCTTGCCTGGAAGAGTCATCAAGAGAATGCT  500

seq1  TATTTGAGGCACGGGTCGGGAGCAGAGTTCAACCCTTTTCCATTGCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAGGCACGGGTCGGGAGCAGAGTTCAACCCTTTTCCATTGCTCTC  550

seq1  CATGCTGGAATGGTTTGTGTATTTGTTTCCAGTTTTCATGAAGCAGATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGGAATGGTTTGTGTATTTGTTTCCAGTTTTCATGAAGCAGATTT  600

seq1  TTTTTTTTTTCATTTGGAAACTTCTGCGTTTCACTCATAAGTGCCTGTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTCATTTGGAAACTTCTGCGTTTCACTCATAAGTGCCTGTTC  650

seq1  CTTCCCTGTCGCTGCTCTGGAGAAGCAGGTTCTTTTAAGAAAACCCTGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTGTCGCTGCTCTGGAGAAGCAGGTTCTTTTAAGAAAACCCTGAG  700

seq1  TCACCCTCCTATAATGCCTGGCAAGAGTCCTTAGAACAACTCTGTCATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTCCTATAATGCCTGGCAAGAGTCCTTAGAACAACTCTGTCATTT  750

seq1  TAATTAATTTACAAACGTGGGTTTTGTTTTGGGCTGTAGCTGGATATATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAATTTACAAACGTGGGTTTTGTTTTGGGCTGTAGCTGGATATATT  800

seq1  TGATAC-AAATGGTCTGATTATAGCCATGGCTTAACACGGTAAGCACCGA  849
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACAAAATGGTCTGATTATAGCCATGGCTTAACACGGTAAGCACCGA  850

seq1  TGTAATGATGACATTGATTTGTACCGGAGAGGACATATTATAGAAATGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGATGACATTGATTTGTACCGGAGAGGACATATTATAGAAATGTT  900

seq1  TGTAGATGCTTTCGCAGACAGAGGGATGATAAATCTTGTCAACAAATCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGATGCTTTCGCAGACAGAGGGATGATAAATCTTGTCAACAAATCTT  950

seq1  CCTTGGGCTGGCAAGATGGCCTACCAGGTAAGGTGCTTGCTACGAAGCCT  999
       |||||||||||||||||| ||| ||||| ||||||||||||||||||  
seq2  -CTTGGGCTGGCAAGATGGGCTA-CAGGT-AGGTGCTTGCTACGAAGC--  995

seq1  GGTGACCCGAGTTCAATCCCAGGAACCCACACAGTGGAAGGAGAGAAGCA  1049
       |||||| ||||   || ||||||||||||||||||    || |||||||
seq2  TGTGACCGGAGT--CATTCCAGGAACCCACACAGTG---AGAAAGAAGCA  1040

seq1  CTTTGCACAAGTTATTACCTGCATATGCCCCATGGCACAAATGCCCCTCC  1099
      ||||||||||| ||||| |||||||||  |||||   | |||| ||||||
seq2  CTTTGCACAAGGTATTA-CTGCATATG-GCCATG--CCCAATG-CCCTCC  1085

seq1  CCCAAACGAATAA  1112
      |    ||||||||
seq2  C---GACGAATAA  1095