BAC Information

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BAC

Clone NameB6Ng01-139F17
Chromosome1 (Build37)
Map Location 60,276,322 - 60,396,820
singlet/doubletdoublet
Overlap geneNbeal1
Upstream geneAls2, Als2cr7, Fzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf
Downstream geneCyp20a1, Abi2, Raph1, LOC100043027, LOC100042533, Eif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139F17.bB6Ng01-139F17.g
ACCDH938364DH938365
length1,1101,125
definitionDH938364|Mus musculus domesticus DNA, BAC clone: B6Ng01-139F17, 5' end.DH938365|Mus musculus domesticus DNA, BAC clone: B6Ng01-139F17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,276,322 - 60,277,441)(60,395,689 - 60,396,820)
sequence
gaattcttgaaactctttaatttcatttaaatacaaaacttcattgatat
gtgcatattacctgatcacttgggatatttaaaactaatcttgtctgtgt
tcagtaaggcatcttggagatgatatttagattttctacacttgagagct
ctcacaaaggctctttttttatgccagtaagaacttttagttacatagca
acaggtgttccttatcttccagcaggtgatgagaagtccttataatccac
caggaagcccaagtagggacactggatactgggttccagtttattgtttt
gtttggagacttaagaggctactgttttattcttaagtaaatgcgtaaac
tgataatttgatatatttatgtgtaatccctccccctttttttctctaag
attgtattttgagatgggatttaactatgtaaccttatgctggccttgaa
cataggatcctcctgcatcttgtgaaggctgggattacagacatgttctt
ttgtgccagggtgactgattccttttagttaatgtatctaatgtatctag
gtatattcaagtgtgttttctagtatgtaaatccagtccaagattgggtt
tcctactgatgaaattctctccccatgttttctattcttgtttgtatcta
tattattatactattcttttaatgatcatcacatcctgttcatattcata
cctatcacttttagatagttgctaaaatttctttctctggtttatttatt
ctgtcccctttctagaatccagtgtctctatttgacttcctggttgtatt
tgtggacttcttttgatcctaatggaaggtagcagtcttcctataatata
ggaaatatagaacagttgtctatatttaactttctgttgtgtttgtttgt
tcctttgtttgtttcttcttccgagaccgatttctttgtgtagccgtggc
tgtcctagaactagctttgtagactaggctagcctcaaactcaagaggtt
tgccagctcttcttctcaaatgctggattgaaggcgtgtgtcaccaccag
ctgctactctgctttacgtctctgcctcatcactttgcctgattactgac
tttcttcttt
gaattcactttgtagacaaggctgacctcaaactcaggaggatcctctac
ctcccaagtattgggattaaaggcctgcaccaccacgtccactgtcgatg
tcctttttatggagcccagatagactgttgtgctccctgttgagaagcta
taaggcctagttttctgatgtggctttaatacacacaagtaccttaggaa
ccttacctacttgggtaagtttatatgtgggaacttattacttgtaggaa
tagaatttatcaagttatttctcaaaaggctggtgctggacaggtgacag
tgtctacatgcacaaattagatagtcaattttgctactaattttatggga
atttgtctgaatgaaagttttttgttcttgaaaaacagttctcttaccat
tggtcaactgtcaatgcaaaacatagctcttaacttcaaagagaataaga
gatactttatttgagccaaatataggtgaacatggtccaggaatagagtt
gggttgccccaaataacatgaatcttttctatagacttttatagtcacag
aagaaaagaaagtgatgtcagggcattcaccaacatacacgagtacatca
agtaggcaagtgtggtggtttgaatgagaatggttccctataggccactg
tttgaacgttgtccaccagttggtggaattgtttgtaaaggattaggagg
tgtggccttgttgaaggacgtgtgtttcttggggtgagtcttgaggtttc
aaaggcagccaggcctcccatttctgagacatggtattattaaattgtct
gagtttgccttgaactaactctgtagtcacataagccttgaacttctgat
cctcctgccttagactctcaagtagtaaggcttatagttctgtatcatta
ggccaaactccaaaggtttaaaaaaattctcatcagttgattgatgtgat
atgaaatgacaataaaacataagcttaatcatcatttgaaacacttatct
gatgtctgatatggttttaactgaccctggtgacctgacctggctttgga
tcaccatggatttagagacatgatgtatgaagtacagagactcaggaaga
gccttcgttaatgcagcattgtgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_60276322_60277441
seq2: B6Ng01-139F17.b_48_1157

seq1  GAATTCTTGAAACTCTTTAATTTCATTTAAATACAAAACTTCATTGATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGAAACTCTTTAATTTCATTTAAATACAAAACTTCATTGATAT  50

seq1  GTGCATATTACCTGATCACTTGGGATATTTAAAACTAATCTTGTCTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATATTACCTGATCACTTGGGATATTTAAAACTAATCTTGTCTGTGT  100

seq1  TCAGTAAGGCATCTTGGAGATGATATTTAGATTTTCTACACTTGAGAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAAGGCATCTTGGAGATGATATTTAGATTTTCTACACTTGAGAGCT  150

seq1  CTCACAAAGGCTCTTTTTTTATGCCAGTAAGAACTTTTAGTTACATAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAAAGGCTCTTTTTTTATGCCAGTAAGAACTTTTAGTTACATAGCA  200

seq1  ACAGGTGTTCCTTATCTTCCAGCAGGTGATGAGAAGTCCTTATAATCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGTTCCTTATCTTCCAGCAGGTGATGAGAAGTCCTTATAATCCAC  250

seq1  CAGGAAGCCCAAGTAGGGACACTGGATACTGGGTTCCAGTTTATTGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGCCCAAGTAGGGACACTGGATACTGGGTTCCAGTTTATTGTTTT  300

seq1  GTTTGGAGACTTAAGAGGCTACTGTTTTATTCTTAAGTAAATGCGTAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGAGACTTAAGAGGCTACTGTTTTATTCTTAAGTAAATGCGTAAAC  350

seq1  TGATAATTTGATATATTTATGTGTAATCCCTCCCCCTTTTTTTCTCTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATTTGATATATTTATGTGTAATCCCTCCCCCTTTTTTTCTCTAAG  400

seq1  ATTGTATTTTGAGATGGGATTTAACTATGTAACCTTATGCTGGCCTTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATTTTGAGATGGGATTTAACTATGTAACCTTATGCTGGCCTTGAA  450

seq1  CATAGGATCCTCCTGCATCTTGTGAAGGCTGGGATTACAGACATGTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGATCCTCCTGCATCTTGTGAAGGCTGGGATTACAGACATGTTCTT  500

seq1  TTGTGCCAGGGTGACTGATTCCTTTTAGTTAATGTATCTAATGTATCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCCAGGGTGACTGATTCCTTTTAGTTAATGTATCTAATGTATCTAG  550

seq1  GTATATTCAAGTGTGTTTTCTAGTATGTAAATCCAGTCCAAGATTGGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTCAAGTGTGTTTTCTAGTATGTAAATCCAGTCCAAGATTGGGTT  600

seq1  TCCTACTGATGAAATTCTCTCCCCATGTTTTCTATTCTTGTTTGTATCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTGATGAAATTCTCTCCCCATGTTTTCTATTCTTGTTTGTATCTA  650

seq1  TATTATTATACTATTCTTTTAATGATCATCACATCCTGTTCATATTCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATACTATTCTTTTAATGATCATCACATCCTGTTCATATTCATA  700

seq1  CCTATCACTTTTAGATAGTTGCTAAAATTTCTTTCTCTGGTTTATTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCACTTTTAGATAGTTGCTAAAATTTCTTTCTCTGGTTTATTTATT  750

seq1  CTGTCCCCTTTCTAGAATCCAGTGTCTCTATTTGACTTCCTGGTTGTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCCTTTCTAGAATCCAGTGTCTCTATTTGACTTCCTGGTTGTATT  800

seq1  TGTGGACTTCTTTTGATCCTAATGGAAGGTAGCAGTCTTCCTATAATATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGACTTCTTTTGATCCTAATGGAAGGTAGCAGTCTTCCTATAATATA  850

seq1  GGAAATATAGAACAGTTGTCTATATTTAACTTTCTGTTGTGTTTGTTTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATATAGAACAGTTGTCTATATTTAACTTTCTGTTGTGTTTGTTTGT  900

seq1  TCCTTTGTTTGTTTTCTTCTTCCGAGACCGATTTCTTTGTGTAGCCGTGG  950
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGTTTG-TTTCTTCTTCCGAGACCGATTTCTTTGTGTAGCCGTGG  949

seq1  CTGTCCTAGAACTAGCTTTGTAGACTAGGCTAGCCTCAAACTCACAGAGG  1000
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTGTCCTAGAACTAGCTTTGTAGACTAGGCTAGCCTCAAACTCA-AGAGG  998

seq1  TCTGCCAGCCTCTTCTTCTCAAAATGCTGGGATTGAAGGCGTGTGTCACC  1050
      | |||||| ||||||||||| ||||||| |||||||||||||||||||||
seq2  TTTGCCAG-CTCTTCTTCTC-AAATGCT-GGATTGAAGGCGTGTGTCACC  1045

seq1  ACCAGCTGGCCTTACTTCTGCTTTACGTCTCTGCCTCATCACTTTGCTGT  1100
      ||||||||    ||| |||||||||||||||||||||||||||||||   
seq2  ACCAGCTG---CTAC-TCTGCTTTACGTCTCTGCCTCATCACTTTGCCTG  1091

seq1  ATTAACTGACTTTCTTCTTT  1120
      ||| ||||||||||||||||
seq2  ATT-ACTGACTTTCTTCTTT  1110

seq1: chr1_60395689_60396820
seq2: B6Ng01-139F17.g_67_1191 (reverse)

seq1  GTCACAATGCTGCATTTTATGGAAGGCTCTTCACTGGAGTCTTCTGTACT  50
      ||||||||||||||  |||  ||||||||||| || ||||| ||||||||
seq2  GTCACAATGCTGCA--TTAACGAAGGCTCTTC-CT-GAGTC-TCTGTACT  45

seq1  ACATACATCAATGTCTCTAAATCAATGGGTGAT-CAAAGCCAGGTCA-GT  98
       |||||||| ||||||||||||| || |||||| ||||||||||||| ||
seq2  TCATACATC-ATGTCTCTAAATCCAT-GGTGATCCAAAGCCAGGTCAGGT  93

seq1  CA-CAGGGTCAGTTAAAACCATATCAGACATCAGATAAGTGTTTTCAAAT  147
      || |||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CACCAGGGTCAGTTAAAACCATATCAGACATCAGATAAGTG-TTTCAAAT  142

seq1  GATGATAAAGCTTATGTTTTATTGTCATTTCATATCACATCAATCAACTG  197
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTAAGCTTATGTTTTATTGTCATTTCATATCACATCAATCAACTG  192

seq1  ATGAGAATTTTTTTTAAACCTTTGGAGTTTGGCCTAATGATACAGAACTA  247
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAA-TTTTTTTAAACCTTTGGAGTTTGGCCTAATGATACAGAACTA  241

seq1  TAAGCCTTACTACTTGAGAGTCTAAGGCAGGAGGATCAGAAGTTCAAGGC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTTACTACTTGAGAGTCTAAGGCAGGAGGATCAGAAGTTCAAGGC  291

seq1  TTATGTGGACTACAGAGTTAGTTCAAGGCAAACTCAGACAATTTAATAAT  347
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGT-GACTACAGAGTTAGTTCAAGGCAAACTCAGACAATTTAATAAT  340

seq1  ACCATGTCTCAGAAATGGGAGGCCTGGCTGCCTTTGAAACCTCAAGACTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTCTCAGAAATGGGAGGCCTGGCTGCCTTTGAAACCTCAAGACTC  390

seq1  ACCCCAAGAAACACACGTCCTTCAACAAGGCCACACCTCCTAATCCTTTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAGAAACACACGTCCTTCAACAAGGCCACACCTCCTAATCCTTTA  440

seq1  CAAACAATTCCACCAACTGGTGGACAACGTTCAAACAGTGGCCTATAGGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAATTCCACCAACTGGTGGACAACGTTCAAACAGTGGCCTATAGGG  490

seq1  AACCATTCTCATTCAAACCACCACACTTGCCTACTTGATGTACTCGTGTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTCTCATTCAAACCACCACACTTGCCTACTTGATGTACTCGTGTA  540

seq1  TGTTGGTGAATGCCCTGACATCACTTTCTTTTCTTCTGTGACTATAAAAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTGAATGCCCTGACATCACTTTCTTTTCTTCTGTGACTATAAAAG  590

seq1  TCTATAGAAAAGATTCATGTTATTTGGGGCAACCCAACTCTATTCCTGGA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGAAAAGATTCATGTTATTTGGGGCAACCCAACTCTATTCCTGGA  640

seq1  CCATGTTCACCTATATTTGGCTCAAATAAAGTATCTCTTATTCTCTTTGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTCACCTATATTTGGCTCAAATAAAGTATCTCTTATTCTCTTTGA  690

seq1  AGTTAAGAGCTATGTTTTGCATTGACAGTTGACCAATGGTAAGAGAACTG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGAGCTATGTTTTGCATTGACAGTTGACCAATGGTAAGAGAACTG  740

seq1  TTTTTCAAGAACAAAAAACTTTCATTCAGACAAATTCCCATAAAATTAGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAAGAACAAAAAACTTTCATTCAGACAAATTCCCATAAAATTAGT  790

seq1  AGCAAAATTGACTATCTAATTTGTGCATGTAGACACTGTCACCTGTCCAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAATTGACTATCTAATTTGTGCATGTAGACACTGTCACCTGTCCAG  840

seq1  CACCAGCCTTTTGAGAAATAACTTGATAAATTCTATTCCTACAAGTAATA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCCTTTTGAGAAATAACTTGATAAATTCTATTCCTACAAGTAATA  890

seq1  AGTTCCCACATATAAACTTACCCAAGTAGGTAAGGTTCCTAAGGTACTTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCCACATATAAACTTACCCAAGTAGGTAAGGTTCCTAAGGTACTTG  940

seq1  TGTGTATTAAAGCCACATCAGAAAACTAGGCCTTATAGCTTCTCAACAGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATTAAAGCCACATCAGAAAACTAGGCCTTATAGCTTCTCAACAGG  990

seq1  GAGCACAACAGTCTATCTGGGCTCCATAAAAAGGACATCGACAGTGGACG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACAACAGTCTATCTGGGCTCCATAAAAAGGACATCGACAGTGGACG  1040

seq1  TGGTGGTGCAGGCCTTTAATCCCAATACTTGGGAGGTAGAGGATCCTCCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTGCAGGCCTTTAATCCCAATACTTGGGAGGTAGAGGATCCTCCT  1090

seq1  GAGTTTGAGGTCAGCCTTGTCTACAAAGTGAATTC  1132
      |||||||||||||||||||||||||||||||||||
seq2  GAGTTTGAGGTCAGCCTTGTCTACAAAGTGAATTC  1125