BAC Information

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BAC

Clone NameB6Ng01-139I17
Chromosome1 (Build37)
Map Location 101,876,226 - 101,980,857
singlet/doubletdoublet
Overlap geneC230078M14Rik
Upstream geneLOC633295
Downstream geneEG666200
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139I17.bB6Ng01-139I17.g
ACCDH938500DH938501
length1,1851,161
definitionDH938500|Mus musculus domesticus DNA, BAC clone: B6Ng01-139I17, 5' end.DH938501|Mus musculus domesticus DNA, BAC clone: B6Ng01-139I17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,876,226 - 101,877,364)(101,979,680 - 101,980,857)
sequence
gaattctgagttccatccttagaacacaagtacatgaggctttctttagt
gatgtgcacttgtaatcccagtgatggtgatacagaaacagatggatctc
tccaaagcactgttagcccaggttagcctaaacagcaaattcctgacaaa
agaagacgtgagactaggccagtgcctggcaaatacagaagtagatgctc
acagttatctgtcctatggaacacagggctcccaatggaggagctagaga
aagtacctaaggagctgaaggggtctgcaactctatagatggaacaagaa
tatgaactaaccagtacccccagagttcatgtctctagctgcatatgtag
cagaagatggcctagttggccatcattgggaagagaggccccttggtatt
gcaaactttatatgccccagcacaggggaatgccaaggccaagaagtggg
agtgggtgaatatggcagcagggtggggggaggctataggggacttttgg
gacagcatttgaaatgtaaatgaagaaaatatctaataaaaaattgaaaa
aaaaagaaatttctacctggattctaagtcatatcagagggagatcattc
tttcttctgggcaatgtaaaaactgaaaaggatggagggctatgtactga
ctttttcaagtctcagattttacagaaaaatccaaggagaaaaagaaaga
gcaaatcattggaatccaaatacacccttcacctttcattttttaacaac
cttgttagaaagagaatgcatgccagatacacacagacacacacagacac
acacacatacacagaaaaaaaaaagaagatactttgtctcaacaaacaat
gtcaaggtagacagcaaaagaattgcagccaactttaatctcttgcctcc
acacatcctgctgtatttatatttacctacagaggatagaaaaaatggat
atgggagtgaggtcatagacaattgtggctgcagctggtcttgattcttt
tggaggcatcaagctggaaggaaactaggttaaatactcccttagaatat
gcagacaacatatagtcaggccctataaattcagttgatttgtggaattt
tgatctcaataaatgacatttcttgttttatataccctagatactgagaa
ggtgtcaagcactaattcaattcacgtttggaccg
gaattccagggaaagggaacttcagctgagcatgggtttgcagagaatac
cacccagctagcctgggaaatttgggattgcagagtaggtttggcagcta
tcagcctagaaggggagtaggagtggcagatgactgggaatttgagcaat
tccacagcaagcaggaaaaaaaaaatcttacaagcagaaaagtaggattg
agtttagattgatactatgctaattcacacaaacaaaattcattttcata
gttaagaaatgtccctagtactatcagagagttgtagtttatagaaacaa
atgataaagaagcagaaaaatctcagcccttatatacttaaattacatgt
catgtatggaatgatgaggtagttttgaatataggtaaatttaatcatat
agtacaaagtagtatacatataatgtgtatcacagtaactgtataaacaa
taaataaatgcattaaaataatttgggaggaaagaaagaaaaaacatcca
ttgtggagttttacctgtaatataaatgtgccctcatattcacacatgaa
tatgtacacacagcagacacatcttagtaagtattaaaactaaacaatat
taaatatgacagaaaaatatgtatcaatatataccaggatatgtattgat
attttatatattgagataggatctctcaatatagctctggttgttctgga
actcactatataaaccaggataatgtcatgctcatagagatttgcctgtc
tttacctctcagtgcaagtattaattgtgtataccaacatgcccccaaaa
aattgattttaaaagaaaatttttgaataaaaagatatgagaacaagtaa
ttttagaagtacatgtaagaactatgtcatgaagcattcatcctttatgt
ggcctacgtcattttaaagtgttacacaaaaattaaaagtacttaaagat
agatataaaatggataatgtcccttttttttcattgcactctcaaatcta
ctaaaacagcacttcaatgcctttcagcatgttgattttcctttaagtcg
ttggacttttaaaatgaaactctcgttatgaattatatcgaataaccaag
aacatcccccctagtatgagcgttgtcgtgttgaccatggcaaagtcttt
gtgacactctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_101876226_101877364
seq2: B6Ng01-139I17.b_101_1228

seq1  ACTTGTAATCCCAGTGATGGTGATACAGAAACAGATGGATCTCTCCAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTAATCCCAGTGATGGTGATACAGAAACAGATGGATCTCTCCAAAG  50

seq1  CACTGTTAGCCCAGGTTAGCCTAAACAGCAAATTCCTGACAAAAGAAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTAGCCCAGGTTAGCCTAAACAGCAAATTCCTGACAAAAGAAGAC  100

seq1  GTGAGACTAGGCCAGTGCCTGGCAAATACAGAAGTAGATGCTCACAGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGACTAGGCCAGTGCCTGGCAAATACAGAAGTAGATGCTCACAGTTA  150

seq1  TCTGTCCTATGGAACACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCCTATGGAACACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTACC  200

seq1  TAAGGAGCTGAAGGGGTCTGCAACTCTATAGATGGAACAAGAATATGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGCTGAAGGGGTCTGCAACTCTATAGATGGAACAAGAATATGAAC  250

seq1  TAACCAGTACCCCCAGAGTTCATGTCTCTAGCTGCATATGTAGCAGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGTACCCCCAGAGTTCATGTCTCTAGCTGCATATGTAGCAGAAGA  300

seq1  TGGCCTAGTTGGCCATCATTGGGAAGAGAGGCCCCTTGGTATTGCAAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTAGTTGGCCATCATTGGGAAGAGAGGCCCCTTGGTATTGCAAACT  350

seq1  TTATATGCCCCAGCACAGGGGAATGCCAAGGCCAAGAAGTGGGAGTGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGCCCCAGCACAGGGGAATGCCAAGGCCAAGAAGTGGGAGTGGGT  400

seq1  GAATATGGCAGCAGGGTGGGGGGAGGCTATAGGGGACTTTTGGGACAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATGGCAGCAGGGTGGGGGGAGGCTATAGGGGACTTTTGGGACAGCA  450

seq1  TTTGAAATGTAAATGAAGAAAATATCTAATAAAAAATTGAAAAAAAAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAATGTAAATGAAGAAAATATCTAATAAAAAATTGAAAAAAAAAGA  500

seq1  AATTTCTACCTGGATTCTAAGTCATATCAGAGGGAGATCATTCTTTCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTACCTGGATTCTAAGTCATATCAGAGGGAGATCATTCTTTCTTC  550

seq1  TGGGCAATGTAAAAACTGAAAAGGATGGAGGGCTATGTACTGACTTTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAATGTAAAAACTGAAAAGGATGGAGGGCTATGTACTGACTTTTTC  600

seq1  AAGTCTCAGATTTTACAGAAAAATCCAAGGAGAAAAAGAAAGAGCAAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCAGATTTTACAGAAAAATCCAAGGAGAAAAAGAAAGAGCAAATC  650

seq1  ATTGGAATCCAAATACACCCTTCACCTTTCATTTTTTAACAACCTTGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAATCCAAATACACCCTTCACCTTTCATTTTTTAACAACCTTGTTA  700

seq1  GAAAGAGAATGCATGCCAGATACACACAGACACACACAGACACACACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGAATGCATGCCAGATACACACAGACACACACAGACACACACACA  750

seq1  TACACAGAAAAAAAAAAGAAGATACTTTGTCTCAACAAACAATGTCAAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGAAAAAAAAAAGAAGATACTTTGTCTCAACAAACAATGTCAAGG  800

seq1  TAGACAGCAAAAGAATTGCAGCCAACTTTAATCTCTTGCCTCCACACATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGCAAAAGAATTGCAGCCAACTTTAATCTCTTGCCTCCACACATC  850

seq1  CTGCTGTATTTATATTTACCTACAAGAGGATAGAAAAAATGTATAT-GGA  899
      ||||||||||||||||||||||| ||||||||||||||||| |||| |||
seq2  CTGCTGTATTTATATTTACCTAC-AGAGGATAGAAAAAATGGATATGGGA  899

seq1  GTGA-GTCATAGACAAAATGTGGCTGCAGCTGGTC-TGATACATTTGGAG  947
      |||| ||||||||| || ||||||||||||||||| |||| | |||||||
seq2  GTGAGGTCATAGAC-AATTGTGGCTGCAGCTGGTCTTGATTCTTTTGGAG  948

seq1  GCAATCAAAGCTGGGAGGAAACTAGGTAAAATACTCCCTTAGAATATTCA  997
      || ||| ||||||| |||||||||||| ||||||||||||||||||| ||
seq2  GC-ATC-AAGCTGGAAGGAAACTAGGTTAAATACTCCCTTAGAATATGCA  996

seq1  GACAACATATAGTCA-GTCCTATAAATATCAGTTGAATTTGTGAATTTCT  1046
      ||||||||||||||| | ||||||||| ||||||| ||||||| | || |
seq2  GACAACATATAGTCAGGCCCTATAAAT-TCAGTTG-ATTTGTGGAATTTT  1044

seq1  GATCTCCATAATAATGACATATTCTTGGTTTTATTAATAACCTAGATACT  1096
      |||||| |||  |||||||| ||||| |||||||  ||| ||||||||||
seq2  GATCTCAATA--AATGACAT-TTCTT-GTTTTAT--ATACCCTAGATACT  1088

seq1  GAGAAGTTGTCAAAGCAAACTAATCTAATCTACGTTTGTACCG  1139
      |||||| |||| ||||  ||||||  |||  ||||||| ||||
seq2  GAGAAGGTGTC-AAGC--ACTAATTCAATTCACGTTTGGACCG  1128

seq1: chr1_101979680_101980857
seq2: B6Ng01-139I17.g_67_1227 (reverse)

seq1  CAGAGTGTCACAAAGACTTTG-CATGTGTCCACACAGACAAATGCTCATA  49
      ||||||||||||||||||||| |||| ||| |||| ||| || |||||||
seq2  CAGAGTGTCACAAAGACTTTGCCATG-GTCAACAC-GAC-AACGCTCATA  47

seq1  CTAGGGTGGAATGTTCTTGGGTCATCTGATATATATATATATATGAGATT  99
      |||||| || |||||||| ||| ||  |||||| ||  ||| | |||| |
seq2  CTAGGG-GGGATGTTCTT-GGTTATTCGATATA-ATTCATA-ACGAGAGT  93

seq1  TTAATTTTTAAAAAGTCAAACAAACTAAAAGGAAAATCAAACCATGCTGG  149
      || |||||  ||||||| |||  ||| |||||||||||||  ||||||| 
seq2  TTCATTTT--AAAAGTCCAAC-GACTTAAAGGAAAATCAA--CATGCTGA  138

seq1  AAGGACATTGAAGTGCTTGTTTTAGTAGAATTTGAGAGTGCAATGAAAGA  199
      |||| ||||||||||| ||||||||||| ||||||||||||||||||| |
seq2  AAGG-CATTGAAGTGC-TGTTTTAGTAG-ATTTGAGAGTGCAATGAAAAA  185

seq1  AAAGGGACATTATCCATTTTAATATCTATCTTTAAGTAACTTTTAAATTT  249
      |||||||||||||||||||| |||||||||||||||| |||||| |||||
seq2  AAAGGGACATTATCCATTTT-ATATCTATCTTTAAGT-ACTTTT-AATTT  232

seq1  TTGTGTAACACTTTAAAATGAAGTAGGCCACATAAAGGATGAATGCTTCA  299
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTGTGTAACACTTTAAAATGACGTAGGCCACATAAAGGATGAATGCTTCA  282

seq1  TGACATAGTTCTTACATGTACTTCTAAAATTACTTGTTCTCATATCTTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATAGTTCTTACATGTACTTCTAAAATTACTTGTTCTCATATCTTTT  332

seq1  TATTCAAAAATTTTCTTTTAAAATCAATTTTTTGGGGGCATGTTGGTATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAAAATTTTCTTTTAAAATCAATTTTTTGGGGGCATGTTGGTATA  382

seq1  CACAATTAATACTTGCACTGAGAGGTAAAGACAGGCAAATCTCTATGAGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTAATACTTGCACTGAGAGGTAAAGACAGGCAAATCTCTATGAGC  432

seq1  ATGACATTATCCTGGTTTATATAGTGAGTTCCAGAACAACCAGAGCTATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACATTATCCTGGTTTATATAGTGAGTTCCAGAACAACCAGAGCTATA  482

seq1  TTGAGAGATCCTATCTCAATATATAAAATATCAATACATATCCTGGTATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAGATCCTATCTCAATATATAAAATATCAATACATATCCTGGTATA  532

seq1  TATTGATACATATTTTTCTGTCATATTTAATATTGTTTAGTTTTAATACT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATACATATTTTTCTGTCATATTTAATATTGTTTAGTTTTAATACT  582

seq1  TACTAAGATGTGTCTGCTGTGTGTACATATTCATGTGTGAATATGAGGGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAGATGTGTCTGCTGTGTGTACATATTCATGTGTGAATATGAGGGC  632

seq1  ACATTTATATTACAGGTAAAACTCCACAATGGATGTTTTTTCTTTCTTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTATATTACAGGTAAAACTCCACAATGGATGTTTTTTCTTTCTTTC  682

seq1  CTCCCAAATTATTTTAATGCATTTATTTATTGTTTATACAGTTACTGTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAAATTATTTTAATGCATTTATTTATTGTTTATACAGTTACTGTGA  732

seq1  TACACATTATATGTATACTACTTTGTACTATATGATTAAATTTACCTATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACATTATATGTATACTACTTTGTACTATATGATTAAATTTACCTATA  782

seq1  TTCAAAACTACCTCATCATTCCATACATGACATGTAATTTAAGTATATAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAACTACCTCATCATTCCATACATGACATGTAATTTAAGTATATAA  832

seq1  GGGCTGAGATTTTTCTGCTTCTTTATCATTTGTTTCTATAAACTACAACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGAGATTTTTCTGCTTCTTTATCATTTGTTTCTATAAACTACAACT  882

seq1  CTCTGATAGTACTAGGGACATTTCTTAACTATGAAAATGAATTTTGTTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATAGTACTAGGGACATTTCTTAACTATGAAAATGAATTTTGTTTG  932

seq1  TGTGAATTAGCATAGTATCAATCTAAACTCAATCCTACTTTTCTGCTTGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATTAGCATAGTATCAATCTAAACTCAATCCTACTTTTCTGCTTGT  982

seq1  AAGATTTTTTTTTTCCTGCTTGCTGTGGAATTGCTCAAATTCCCAGTCAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTTTTTTTTCCTGCTTGCTGTGGAATTGCTCAAATTCCCAGTCAT  1032

seq1  CTGCCACTCCTACTCCCCTTCTAGGCTGATAGCTGCCAAACCTACTCTGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACTCCTACTCCCCTTCTAGGCTGATAGCTGCCAAACCTACTCTGC  1082

seq1  AATCCCAAATTTCCCAGGCTAGCTGGGTGGTATTCTCTGCAAACCCATGC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAAATTTCCCAGGCTAGCTGGGTGGTATTCTCTGCAAACCCATGC  1132

seq1  TCAGCTGAAGTTCCCTTTCCCTGGAATTC  1178
      |||||||||||||||||||||||||||||
seq2  TCAGCTGAAGTTCCCTTTCCCTGGAATTC  1161