BAC Information

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BAC

Clone NameB6Ng01-139N15
Chromosome1 (Build37)
Map Location 161,197,326 - 161,374,709
singlet/doubletdoublet
Overlap geneRfwd2, EG620484
Upstream gene6430517E21Rik, Astn1, Pappa2, 4930562F17Rik, EG240853, LOC664972
Downstream geneTnr, 4930523C07Rik, 4930562F07Rik, Tnn, Mrps14, Cacybp, Rabgap1l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-139N15.bB6Ng01-139N15.g
ACCDH938730DH938731
length1,188643
definitionDH938730|Mus musculus domesticus DNA, BAC clone: B6Ng01-139N15, 5' end.DH938731|Mus musculus domesticus DNA, BAC clone: B6Ng01-139N15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(161,197,326 - 161,198,524)(161,374,067 - 161,374,709)
sequence
gaattcataataaagttcagattacttacagaaattcattgggagattca
gaggctattgtgggttgaggtctttacatctggctaaatttaaatttagt
gttttttgtatttacacatgtgattttcttttgctgacattaagaagaaa
caaaggataatgaatgatgtagtatttaatcagaattcagtatctcttat
aatattactgatttattatatttacattacccgttaagccattttgagct
aaggcagaagtaactttacctgattatgtatatctatagtttcattttca
aatttgctatttttccactgatgagaacattccacatagaaaggccagtc
atgagattcagagacatagtttatatgattctctttgattagccccttta
ggttaatgagcaaaaattagaatttatgtcattgttggacaaactcagta
ttttattcaagaatgctactctctttttttttttaattacttgtagatta
ctcctagagagtgacagacatattctcggtttttgtcaattaatttggag
atttgactgttggaatccagtcaccatctcatcttacttatcctagtgtc
cactaatcgatcatcacttgtatgaatagttcactgtgtaaaaaatatac
tgtgtcctctttgatatatttctttttggctttttcttcattggatgctt
tcttttattagaacaggatttatatttttttaacactaggcaagacttcc
ttctaaatttcagattaactttatttttgtattctatggaaagggaatcc
ttgagaggtttgataaaaaagctgtggctagaactgaatgtaatgccaca
tgcctgtttgagttatgcatctgttgtttggagtatgtacaataactcat
agaattacaatttcaggaaatgagtggcctctactctcctgtcagtgaag
atagcacagtgcctcaatttgaagctccttctcatcacacaaggtacaaa
gctttttttcagtattgtttgggattttgtattcgtgttcatgtactgta
gttctcagggccttgttattgaagactggacttgacaccactgagaaaaa
ggggcagagagcattttggtgtttggttggtttccgagacagggttctct
gtatagcctgcgtgccctggaactacttggtaaacgag
gaattcaagtcccttttcctggtcacatgacctgcctgcatgagtatcct
caagagttcacacctacatctcatgcagtagcaggagctgaataaaataa
tctcataaagagcacttcatagcacacagcatggtcagaataaaaggtta
gtgaaaagcagactttgttctaggctactgtaactttccacaagacacag
agttcacagttagttgtacgagggccagtgaaatgactcagcttgtaaaa
gtgctttctgtgtaggcctgataagttcaattcccagaatccactgaaga
gagaaccaatgcacaagagttctcctctgatctgcagaggtgtgtcatag
cacatatgtgatgtactcacactcatgtacatgatacacacatgagcaat
cattaattcattatttaattactaactaacctttaattaaaaagctagtt
atatgggctagagagttggttctgtggttaagagtattggctactctttc
agggaaccagggttcaatcacagcatttacatggtggcagacaaccttct
gtggtcccacaggatctaccctctttagacatctccagtcaccaggcatg
cacatagtatgtatatgtgtgtatatgtatatgtatgtgtatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_161197326_161198524
seq2: B6Ng01-139N15.b_46_1233

seq1  GAATTCATAATAAAGTTCAGATTACTTACAGAAATTCATTGGGAGATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAATAAAGTTCAGATTACTTACAGAAATTCATTGGGAGATTCA  50

seq1  GAGGCTATTGTGGGTTGAGGTCACTACATCTGGCTAAATTTAAATTTAGT  100
      ||||||||||||||||||||||  ||||||||||||||||||||||||||
seq2  GAGGCTATTGTGGGTTGAGGTCTTTACATCTGGCTAAATTTAAATTTAGT  100

seq1  GTTTTTTGTATTTACACATGTGATTTTCTTTTGCTGACATTAAGAAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGTATTTACACATGTGATTTTCTTTTGCTGACATTAAGAAGAAA  150

seq1  CAAAGGATAATGAATGATGTAGTATTTAATCAGAATTCAGTATCTCTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGATAATGAATGATGTAGTATTTAATCAGAATTCAGTATCTCTTAT  200

seq1  AATATTACTGATTTATTATATTTACATTACCCGTTAAGCCATTTTGAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTACTGATTTATTATATTTACATTACCCGTTAAGCCATTTTGAGCT  250

seq1  AAGGCAGAAGTAACTTTACCTGATTATGTATATCTATAGTTTCATTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGAAGTAACTTTACCTGATTATGTATATCTATAGTTTCATTTTCA  300

seq1  AATTTGCTATTTTTCCACTGATGAGAACATTCCACATAGAAAGGCCAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCTATTTTTCCACTGATGAGAACATTCCACATAGAAAGGCCAGTC  350

seq1  ATGAGATTCAGAGACATAGTTTATATGATTCTCTTTGATTAGCCCCTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATTCAGAGACATAGTTTATATGATTCTCTTTGATTAGCCCCTTTA  400

seq1  GGTTAATGAGCAAAAATTAGAATTTATGTCATTGTTGGACAAACTCAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAATGAGCAAAAATTAGAATTTATGTCATTGTTGGACAAACTCAGTA  450

seq1  TTTTATTCAAGAATGCTACTCTCTTTTTTTTTTTAATTACTTGTAGATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCAAGAATGCTACTCTCTTTTTTTTTTTAATTACTTGTAGATTA  500

seq1  CTCCTAGAGAGTGACAGACATATTCTCGGTTTTTGTCAATTAATTTGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGAGAGTGACAGACATATTCTCGGTTTTTGTCAATTAATTTGGAG  550

seq1  ATTTGACTGTTGGAATCCAGTCACCATCTCATCTTACTTATCCTAGTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACTGTTGGAATCCAGTCACCATCTCATCTTACTTATCCTAGTGTC  600

seq1  CACTAATCGATCATCACTTGTATGAATAGTTCACTGTGTAAAAAATATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATCGATCATCACTTGTATGAATAGTTCACTGTGTAAAAAATATAC  650

seq1  TGTGTCCTCTTTGATATATTTCTTTTTGGCTTTTTCTTCATTGGATGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCCTCTTTGATATATTTCTTTTTGGCTTTTTCTTCATTGGATGCTT  700

seq1  TCTTTTATTAGAACAGGATTTATATTTTTTTAACACTAGGCAAGACTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATTAGAACAGGATTTATATTTTTTTAACACTAGGCAAGACTTCC  750

seq1  TTCTAAATTTCAGATTAACTTTATTTTTGTATTCTATGG-AAGGGAATCC  799
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTCTAAATTTCAGATTAACTTTATTTTTGTATTCTATGGAAAGGGAATCC  800

seq1  TTGAGAGGTTTGAT-AAAAAGCTGTGGCTAGAACTGAATGTAATGCCACA  848
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTGAGAGGTTTGATAAAAAAGCTGTGGCTAGAACTGAATGTAATGCCACA  850

seq1  TGCCTGTTTGAGTTATGCATCTGTTGTTTGGAGTATGTACAATAACTCAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTTTGAGTTATGCATCTGTTGTTTGGAGTATGTACAATAACTCAT  900

seq1  AGAATTACAATTTCAGGAAATGAGTGGCCTCTACTCTCCTGTCAGTGAAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTACAATTTCAGGAAATGAGTGGCCTCTACTCTCCTGTCAGTGAAG  950

seq1  ATAGCACAGTGCCTCAATTTGAAGCTCCTTCTCCATCACAC-AGGTACAA  997
      |||||||||||||||||||||||||||||||| |||||||| ||||||||
seq2  ATAGCACAGTGCCTCAATTTGAAGCTCCTTCT-CATCACACAAGGTACAA  999

seq1  AGCTTTTTATCAGTAATTGTTTGGGATTTTGTATTCGGTGTTCATGGTAC  1047
      |||||||| ||||| ||||||||||||||||||||| |||||||| ||||
seq2  AGCTTTTTTTCAGT-ATTGTTTGGGATTTTGTATTC-GTGTTCAT-GTAC  1046

seq1  TGTAGTTCTCAGGAGCCTTGTTAATGAAGACTGTGACATGACACCACTGA  1097
      ||||||||||||| ||||||||| ||||||||| ||| ||||||||||||
seq2  TGTAGTTCTCAGG-GCCTTGTTATTGAAGACTG-GACTTGACACCACTGA  1094

seq1  GAAAAAGGGTGCAGAGAGCCATTTTTGTTTGTTTGTTTTGTTTTTCGAGA  1147
      ||||||||| |||||||| |||||| |  ||||||  ||| ||| |||||
seq2  GAAAAAGGG-GCAGAGAG-CATTTTGG--TGTTTG-GTTGGTTTCCGAGA  1139

seq1  CAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAAACC  1197
      ||||| |||||||||||| ||||  || ||||||||| |||| |||||| 
seq2  CAGGG-TTCTCTGTATAG-CCTGCGTGCCCTGGAACT-ACTTGGTAAACG  1186

seq1  AG  1199
      ||
seq2  AG  1188

seq1: chr1_161374067_161374709
seq2: B6Ng01-139N15.g_69_711 (reverse)

seq1  CATACACATACATATACATATACACACATATACATACTATGTGCATGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACATACATATACATATACACACATATACATACTATGTGCATGCCT  50

seq1  GGTGACTGGAGATGTCTAAAGAGGGTAGATCCTGTGGGACCACAGAAGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACTGGAGATGTCTAAAGAGGGTAGATCCTGTGGGACCACAGAAGGT  100

seq1  TGTCTGCCACCATGTAAATGCTGTGATTGAACCCTGGTTCCCTGAAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCCACCATGTAAATGCTGTGATTGAACCCTGGTTCCCTGAAAGAG  150

seq1  TAGCCAATACTCTTAACCACAGAACCAACTCTCTAGCCCATATAACTAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAATACTCTTAACCACAGAACCAACTCTCTAGCCCATATAACTAGC  200

seq1  TTTTTAATTAAAGGTTAGTTAGTAATTAAATAATGAATTAATGATTGCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATTAAAGGTTAGTTAGTAATTAAATAATGAATTAATGATTGCTC  250

seq1  ATGTGTGTATCATGTACATGAGTGTGAGTACATCACATATGTGCTATGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTATCATGTACATGAGTGTGAGTACATCACATATGTGCTATGAC  300

seq1  ACACCTCTGCAGATCAGAGGAGAACTCTTGTGCATTGGTTCTCTCTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTCTGCAGATCAGAGGAGAACTCTTGTGCATTGGTTCTCTCTTCAG  350

seq1  TGGATTCTGGGAATTGAACTTATCAGGCCTACACAGAAAGCACTTTTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCTGGGAATTGAACTTATCAGGCCTACACAGAAAGCACTTTTACA  400

seq1  AGCTGAGTCATTTCACTGGCCCTCGTACAACTAACTGTGAACTCTGTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGTCATTTCACTGGCCCTCGTACAACTAACTGTGAACTCTGTGTC  450

seq1  TTGTGGAAAGTTACAGTAGCCTAGAACAAAGTCTGCTTTTCACTAACCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGAAAGTTACAGTAGCCTAGAACAAAGTCTGCTTTTCACTAACCTT  500

seq1  TTATTCTGACCATGCTGTGTGCTATGAAGTGCTCTTTATGAGATTATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTGACCATGCTGTGTGCTATGAAGTGCTCTTTATGAGATTATTTT  550

seq1  ATTCAGCTCCTGCTACTGCATGAGATGTAGGTGTGAACTCTTGAGGATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGCTCCTGCTACTGCATGAGATGTAGGTGTGAACTCTTGAGGATAC  600

seq1  TCATGCAGGCAGGTCATGTGACCAGGAAAAGGGACTTGAATTC  643
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCAGGCAGGTCATGTGACCAGGAAAAGGGACTTGAATTC  643