BAC Information

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BAC

Clone NameB6Ng01-140D21
Chromosome1 (Build37)1 (Build37)
Map Location 95,730,366 - 95,730,880187,035,556 - 187,036,000
singlet/doubletsingletsinglet
Overlap geneD2hgdh
Upstream geneGpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok, Thap4, Atg4b, Dtymk, Ing5
Downstream geneGal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025, LOC100040685
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140D21.bB6Ng01-140D21.g
ACCDH939025DH939026
length984439
definitionDH939025|Mus musculus domesticus DNA, BAC clone: B6Ng01-140D21, 5' end.DH939026|Mus musculus domesticus DNA, BAC clone: B6Ng01-140D21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(95,730,366 - 95,730,880)(187,035,556 - 187,036,000)
sequence
gaattcaaacagagcaggaagctctggaggcaggagctgatgcagaggca
atggaggatgctgcttgttagcttgctcagcctacgtatagaacccagga
ccaccagcaagggtggagctacccaccttggactgggccctctcccatca
ctaaataagaaaatgccctacaggcttgcttatagcccaaccttatggag
gcatgttctccacggagattcccttctctcagatgactccagcttgtgtg
aaggtaacacagaccttgggcctcacacatgctggccaggaactgacctc
tgagctgtaaccctagcccatcatctgttttctaatttttaaagttgtct
tttttaaatcaatctctctctatatctctctctccctccctttctccccc
cgcctcctttgcatgtacacacatctgtgccagcaaaagttagacgaggg
catctcaaagctagagttacaggttattgtaaatcactcgacaggagaca
gctgggaactgaattcatgttctttggaaagtgctctgaatttctgagcc
tggatttcacaatgagctccagggtagccagggataaagtgaaatattgt
cttaataaaacaaacagcaaaaacaacaaaataagaattaaaataaccgg
gctggtgagatggctcagcggttaagagtactgactgctagccgggcttg
gtggcgcacgcctttaatcccagcactcgggaggcagaggcaggcggatt
tctgagttcgaggccagcctggtctacaaagtgagctccaggacagccag
ggctatacagagaaaccctgtctcgaaaaacaaacaaacaaacaaacaaa
caaaacaaaacaaaaaagagtactgactgctctttccagaagtcctgagt
tcaaatcccagcaaccacatggctcataaccacccgtaatcagatctgaa
gacagctacagtgtactacatataataaacaaat
tgtgctgttttctctggtagttgtactaacttgtagtgacttaatgtata
ttggcaacatgggtgtttctccgtatctttgcaggtcttccattcttgct
gctgcagttttccatacacttcctgggcgttttgtctgtgtcatttgccc
agttttaattggatcaaagttgttattttactattgagttgcttgagttc
tgtactattctaggtcatcatcgttctgtcatttcctggctattaccctt
ggattggtttttagttttgttgttattttttgatcctaccccctaatacc
tacctatagccatgctatgttttatattttatagtagctccatagtttca
gctcttacacacatgcctgagtgtttgtttgtttgtttgtatagagttta
ttgagggcatgggaaggggcattgggaagggaggagagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_95730366_95730880
seq2: B6Ng01-140D21.b_709_1028 (reverse)

seq1  ATTTATTTATTATATGTAAGTACATTGTAGCTGTCTTCAGACACCCCAGA  50
                                                        
seq2  --------------------------------------------------  0

seq1  AGAGGGCATCCGATCTCATTACCAATGGTTGTGAGCCATCTGGTGGATAC  100
                                                        
seq2  --------------------------------------------------  0

seq1  TGGGATTTGAACTCAGGACTTTTGGAAGAGCAGTCAGTGCTCTTAACCGC  150
                                                        
seq2  --------------------------------------------------  0

seq1  TGAGCCATCTCTCCAGCTTTTTTTTTTCAAAGATTTATTTATTATTTTAC  200
                                      |||| |||||||| |   
seq2  --------------------------------ATTTGTTTATTATAT---  15

seq1  ATAAGTACACTGTAGCTGACTTCAGATGCACCAGAAGAGGGTGTCAGATC  250
         ||||||||||||||| ||                      |||||||
seq2  -GTAGTACACTGTAGCTGTCT----------------------TCAGATC  42

seq1  TCATTACGGGTG---AGCCCCCTTGTGGTTCCTGGAATTTGAACTCAGGA  297
      | ||||||||||   |    || ||||||| |||| ||||||||||||||
seq2  TGATTACGGGTGGTTATGAGCCATGTGGTTGCTGGGATTTGAACTCAGGA  92

seq1  CCTTTGG-AAGAGCAGTCAGTGCTCTTTTTTG------TTTGTTTGTTTG  340
      | | ||| ||||||||||||| ||||||||||      ||||||||||||
seq2  CTTCTGGAAAGAGCAGTCAGTACTCTTTTTTGTTTTGTTTTGTTTGTTTG  142

seq1  TT--TTTTTTGGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTTT  388
      ||  ||| || ||||||||||||||||||||||||||||||||||||| |
seq2  TTTGTTTGTTTGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGT  192

seq1  CCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAACCCGCC  438
      |||||| ||||||||||||||||||||||||||||||||||||| |||||
seq2  CCTGGAGCTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCC  242

seq1  TGCCTCTGCCTCCCGAGTGCTAGGATTAAAGGCGTGCGCCACCACACCCG  488
      ||||||||||||||||||||| ||||||||||||||||||||||  ||||
seq2  TGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCAAGCCCG  292

seq1  GCT-GCAGTCAGTGCTCTTAACCGCTGA  515
      ||| ||||||||| ||||||||||||||
seq2  GCTAGCAGTCAGTACTCTTAACCGCTGA  320

seq1: chr1_187035556_187036000
seq2: B6Ng01-140D21.g_67_511

seq1  GAATTCTGTGCTGTTTTCTCTGGTAGTTGTACTAACTTGTAGTGACTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGCTGTTTTCTCTGGTAGTTGTACTAACTTGTAGTGACTTAA  50

seq1  TGTATATTGGCAACATGGGTGTTTCTCCGTATCTTTGCAGGTCTTCCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATTGGCAACATGGGTGTTTCTCCGTATCTTTGCAGGTCTTCCATT  100

seq1  CTTGCTGCTGCAGTTTTCCATACACTTCCTGGGCGTTTTGTCTGTGTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGCTGCAGTTTTCCATACACTTCCTGGGCGTTTTGTCTGTGTCAT  150

seq1  TTGCCCAGTTTTAATTGGATCAAAGTTGTTATTTTACTATTGAGTTGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCAGTTTTAATTGGATCAAAGTTGTTATTTTACTATTGAGTTGCTT  200

seq1  GAGTTCTGTACTATTCTAGGTCATCATCGTTCTGTCATTTCCTGGCTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTGTACTATTCTAGGTCATCATCGTTCTGTCATTTCCTGGCTATT  250

seq1  ACCCTTGGATTGGTTTTTAGTTTTGTTGTTATTTTTTGATCCTACCCCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTGGATTGGTTTTTAGTTTTGTTGTTATTTTTTGATCCTACCCCCT  300

seq1  AATACCTACCTATAGCCATGCTATGTTTTATATTTTATAGTAGCTCCATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTACCTATAGCCATGCTATGTTTTATATTTTATAGTAGCTCCATA  350

seq1  GTTTCAGCTCTTACACACATGCCTGAGTGTTTGTTTGTTTGTTTGTATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGCTCTTACACACATGCCTGAGTGTTTGTTTGTTTGTTTGTATAG  400

seq1  AGTTTATTGAGGGCATGGGAAGGGGCATTGGGAAGGGAGGAGAGG  445
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATTGAGGGCATGGGAAGGGGCATTGGGAAGGGAGGAGAGG  445