BAC Information

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BAC

Clone NameB6Ng01-140G01
Chromosome1 (Build37)
Map Location 135,872,367 - 135,983,809
singlet/doubletdoublet
Overlap geneLOC100042358, Fmod, Btg2
Upstream geneMdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371, Snrpe, Zc3h11a, LOC667118, Lax1, Atp2b4, Optc, Prelp, LOC100042352
Downstream geneEG667414, Chit1, Chi3l1, Mybph, Adora1, Myog, Ppfia4, LOC100042382, Tmem183a, 4933406M09Rik, Cyb5r1, Adipor1, Klhl12, Rabif, 4931440L10Rik, Jarid1b, LOC100042418, Syt2, Ppp1r12b, Ube2t, Lgr6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140G01.bB6Ng01-140G01.g
ACCDH939125DH939126
length767837
definitionDH939125|Mus musculus domesticus DNA, BAC clone: B6Ng01-140G01, 5' end.DH939126|Mus musculus domesticus DNA, BAC clone: B6Ng01-140G01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,872,367 - 135,873,132)(135,982,969 - 135,983,809)
sequence
gaattcattcatctctgtttcctagctgcggctgtagtgaagtcaggtcc
ctcatactcctgtcgccatgtcttccctgccgaggtggtgagctgaacct
ttagactgaaaatcgtaataagcccttccttaacatctgtcatgtcctct
gtcacagcatgagaatagtaactggtgccatgcctcatccgtatggggct
cacattggctgccacatctgtctgatgcagtgccatctacgctgacacag
ggccctgtgctggccatggtggtggctctataaggctaaggcagccccaa
gagtatgggtctgctagcctattcttatgttccttttgtttgggtttctt
tgttgttgttgttgttgttgttgttgttgttgttgaaaggcagggcctca
tgtatcccaggctggtctcaaacttgccagagatgacctcaagtttatga
tcttcctccttcactgcccaaatactagggtcataggtgtgctccaccac
acttgtttcatgcaatgccggggatcaaacccagggacttgtacatgtta
ggcaggcactgcaccaactgagctacatgcctgcatgtctaagctctatc
tcctgtaccaaccaaccggatatacaaggtcttccaggcccagctatgtg
ctggtctgagtcatcttcacccccaaagctctcaaacctagatagccaca
gcaggctttacttttgcagaaatcctccccgactctacatgtcactgtgc
tagcctgtgtgtgtgtg
gaattcctctgcagtgaatggctgcagagccggagccttgcactggctat
cagagatcagctcaggaagtggccagcagaatatctgtcctgatggggga
gatttctgtctctacagcgagggatctcatattctgctggggcccaggcg
tggtcagtgtggaccgcagatggcagattaaagctgagccggcggcagat
ctcctagcccaatactctctccttacagataagccgactgaggtgcggga
ggagactgccagtccagccatctctccctgtctctggactccttcctctg
acccacatggatcgggtgcttggcctttcctggacctaagcctgccatgc
tgtaaagagataccgtggcccagagccaggcggcagaaggggagaagctg
ccgtaggatcccttcctctgttcctgcccaggcgtagccatttcaggaga
cgtttcttccactctttacccccgctgtccttcacagatgcttgtcccag
acactcaagccccaggaggcccagccgagcaacatctggggtcacttcac
cagtctcagggcctctcttcttgtttttctgtctggagatgaagtgagtc
tgccctgggcccccaggaaggaggagaggggctttacaaggggtctgtcc
tctaagtttgcaaagaggcagtaaatccagcttcagatcttgctgctgct
ccgaagtccatggagtatgaaagtcgtcagcaactggcggtagcaccttc
gcaagaacatggcagaaggccaatgagtgaaagtgctggaggtcccgttc
tcgaggcctcgacgatgactactttagcagacgttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_135872367_135873132
seq2: B6Ng01-140G01.b_45_811

seq1  GAATTCATTCATCTCTGTTTCCTAGCTGCGGCTGTAGTGAAGTCAGGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCATCTCTGTTTCCTAGCTGCGGCTGTAGTGAAGTCAGGTCC  50

seq1  CTCATACTCCTGTCGCCATGTCTTCCCTGCCGAGGTGGTGAGCTGAACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATACTCCTGTCGCCATGTCTTCCCTGCCGAGGTGGTGAGCTGAACCT  100

seq1  TTAGACTGAAAATCGTAATAAGCCCTTCCTTAACATCTGTCATGTCCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACTGAAAATCGTAATAAGCCCTTCCTTAACATCTGTCATGTCCTCT  150

seq1  GTCACAGCATGAGAATAGTAACTGGTGCCATGCCTCATCCGTATGGGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGCATGAGAATAGTAACTGGTGCCATGCCTCATCCGTATGGGGCT  200

seq1  CACATTGGCTGCCACATCTGTCTGATGCAGTGCCATCTACGCTGACACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGGCTGCCACATCTGTCTGATGCAGTGCCATCTACGCTGACACAG  250

seq1  GGCCCTGTGCTGGCCATGGTGGTGGCTCTATAAGGCTAAGGCAGCCCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTGTGCTGGCCATGGTGGTGGCTCTATAAGGCTAAGGCAGCCCCAA  300

seq1  GAGTATGGGTCTGCTAGCCTATTCTTATGTTCCTTTTGTTTGGGTTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTATGGGTCTGCTAGCCTATTCTTATGTTCCTTTTGTTTGGGTTTCTT  350

seq1  TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGAAAGGCAGGGCCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGAAAGGCAGGGCCTCA  400

seq1  TGTATCCCAGGCTGGTCTCAAACTTGCCAGAGATGACCTCAAGTTTATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCCAGGCTGGTCTCAAACTTGCCAGAGATGACCTCAAGTTTATGA  450

seq1  TCTTCCTCCTTCACTGCCCAAATACTAGGGTCATAGGTGTGCTCCACCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCCTTCACTGCCCAAATACTAGGGTCATAGGTGTGCTCCACCAC  500

seq1  ACTTGTTTCATGCAATGCCGGGGATCAAACCCAGGGACTTGTACATGTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTTCATGCAATGCCGGGGATCAAACCCAGGGACTTGTACATGTTA  550

seq1  GGCAGGCACTGCACCAACTGAGCTACATGCCTGCATGTCTAAGCTCTATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCACTGCACCAACTGAGCTACATGCCTGCATGTCTAAGCTCTATC  600

seq1  TCCTGTACCAACCAACCGGATATACAAGGTCTTCCAGGCCCAGCTATGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTACCAACCAACCGGATATACAAGGTCTTCCAGGCCCAGCTATGTG  650

seq1  CTGGTCTGAGTCATCTTCA-CCCCAAAGCTCTCAAACCTAGATAGCCACA  699
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTGGTCTGAGTCATCTTCACCCCCAAAGCTCTCAAACCTAGATAGCCACA  700

seq1  GCAGGCTTTAC-TTTGCAGAAATCCTCCCCGACTCTACATGTCACTGTGC  748
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTTTACTTTTGCAGAAATCCTCCCCGACTCTACATGTCACTGTGC  750

seq1  TAGTCCTGTGTGTGTGTG  766
      ||| ||||||||||||||
seq2  TAG-CCTGTGTGTGTGTG  767

seq1: chr1_135982969_135983809
seq2: B6Ng01-140G01.g_67_903 (reverse)

seq1  GGAACTGTCTGCTAAAAGTCTGTCATCCTCGAAGCCTCGAGAACGGGACC  50
      ||||| ||||||| |||||  |||||| |||| |||||||||||||||||
seq2  GGAAC-GTCTGCT-AAAGT-AGTCATCGTCGAGGCCTCGAGAACGGGACC  47

seq1  TCCCACACCTCCACTTCATGGGCCTTCTGCAATGGTCTTGCGAAGGTGTG  100
      |||  ||| | ||| |||| |||||||||| ||| |||||||||||||  
seq2  TCCAGCACTTTCAC-TCATTGGCCTTCTGCCATGTTCTTGCGAAGGTGCT  96

seq1  ACCGCAAG-TGCTGGAGACTCACTAGGGAACACATGGACTTCGGGGCAGC  149
      ||||| || |||||  ||||   |    |   |||||||||||| |||||
seq2  ACCGCCAGTTGCTGACGACT---TTCATACTCCATGGACTTCGGAGCAGC  143

seq1  AGC-AGATCTGAAGCTGGATTTACTGCCTCTTTGCAAACTTAGAGGACAG  198
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGATCTGAAGCTGGATTTACTGCCTCTTTGCAAACTTAGAGGACAG  193

seq1  ACCCCTTGTAAAGCCCCTCTCCTCCTTCCTGGGGGCCCAGGGCAGACTCA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTTGTAAAGCCCCTCTCCTCCTTCCTGGGGGCCCAGGGCAGACTCA  243

seq1  CTTCATCTCCAGACAG-AAAACAAGAAGAGAGGCCCTGAGACTGGTGAAG  297
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTTCATCTCCAGACAGAAAAACAAGAAGAGAGGCCCTGAGACTGGTGAAG  293

seq1  TGACCCCAGATGTTGCTCGGCTGGGCCTCCTGGGGCTTGAGTGTCTGGGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCCAGATGTTGCTCGGCTGGGCCTCCTGGGGCTTGAGTGTCTGGGA  343

seq1  CAAGCATCTGTGAAGGACAGCGGGGGTAAAGAGTGGAAGAAACGTCTCCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATCTGTGAAGGACAGCGGGGGTAAAGAGTGGAAGAAACGTCTCCT  393

seq1  GAAATGGCTACGCCTGGGCAGGAACAGAGGGAGGGATCCTACGGCAGCTT  447
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GAAATGGCTACGCCTGGGCAGGAACAGAGGAAGGGATCCTACGGCAGCTT  443

seq1  CTCCCCTTCTGCCGCCTGGCTCTGGGCCACGGTATCTCTTTACAGCATGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTTCTGCCGCCTGGCTCTGGGCCACGGTATCTCTTTACAGCATGG  493

seq1  CAGGCTTAGGTCCAGGAAAGGCCAAGCACCCGATCCATGTGGGTCAGAGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTAGGTCCAGGAAAGGCCAAGCACCCGATCCATGTGGGTCAGAGG  543

seq1  AAGGAGTCCAGAGACAGGGAGAGATGGCTGGACTGGCAGTCTCCTCCCGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTCCAGAGACAGGGAGAGATGGCTGGACTGGCAGTCTCCTCCCGC  593

seq1  ACCTCAGTCGGCTTATCTGTAAGGAGAGAGTATTGGGCTAGGAGATCTGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGTCGGCTTATCTGTAAGGAGAGAGTATTGGGCTAGGAGATCTGC  643

seq1  CGCCGGCTCAGCTTTAATCTGCCATCTGCGGTCCACACTGACCACGCCTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCGGCTCAGCTTTAATCTGCCATCTGCGGTCCACACTGACCACGCCTG  693

seq1  GGCCCCAGCAGAATATGAGATCCCTCGCTGTAGAGACAGAAATCTCCCCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCAGCAGAATATGAGATCCCTCGCTGTAGAGACAGAAATCTCCCCC  743

seq1  ATCAGGACAGATATTCTGCTGGCCACTTCCTGAGCTGATCTCTGATAGCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGACAGATATTCTGCTGGCCACTTCCTGAGCTGATCTCTGATAGCC  793

seq1  AGTGCAAGGCTCCGGCTCTGCAGCCATTCACTGCAGAGGAATTC  841
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAAGGCTCCGGCTCTGCAGCCATTCACTGCAGAGGAATTC  837