BAC Information

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BAC

Clone NameB6Ng01-140H20
Chromosome1 (Build37)
Map Location 166,614,476 - 166,724,266
singlet/doubletdoublet
Overlap genenone
Upstream geneGm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065
Downstream geneDpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1, Cd247
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140H20.bB6Ng01-140H20.g
ACCDH939207DH939208
length9691,035
definitionDH939207|Mus musculus domesticus DNA, BAC clone: B6Ng01-140H20, 5' end.DH939208|Mus musculus domesticus DNA, BAC clone: B6Ng01-140H20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(166,723,721 - 166,724,266)(166,614,476 - 166,615,522)
sequence
gaattcttccgtatatttgctctccactgttttccctgtgtttagtcatt
ctcttatgtctagcctctaccctaagatttattactctttgtttacaaag
tagaaaagagtcttgctttggactttttttttttcagacttcactgtctt
gtggaaatttcccagacacataaagttagtaaaacttgtatgcctcgtct
cttgttaatctgcctaaagataatttaatttataaccagaactaaagatc
gggttcttagttcttactaaggcaaggagagagatgaggcttcactcctt
cacattcctaataacttgggaggctttgaagaaatgcagccaagggataa
tcaagagactacacaagtcttttctttggcttctctttctcttccttctt
tttctttatttcttatttatcagtagctttatggagatctaatttgtaca
ccaccagttaaggtatatcacacactgacagtatatagtcaaagagtttt
ataaccatcttgacaatcagtttgaggccatttcaattagtcatcaagat
atcctcaaccagttcgtggtcactgtttctcctcaactcttcagcccaag
gcaacaaataatctccttctatttctatgaatttttctactctggatata
ttaatggaatcattcaaaatgtgatggttcatgaccaaattctttaacct
ggtttatgttgaatgttcatccaagttatggcatgtatttgtacttcctt
cctgattccactgtgtgaatatatgagttttgtttaaccattcataaggg
tgacacccggctgtttccactcttatgctgagctaatggtaacgttatgt
ttaacctgatgaggaactactaggatgccttccaaagcagctgcatcatt
ttacatccctagcagcatcagatgatggctccaattcctccatctcctcg
ccagcacttgtcatgcctg
gaattcacagacaacgacaaccttatctggtccttcaataaagagatgcc
atctttcttgtgtccagctcacccgcagacagtgctagtgctgaagaaaa
caactttctgttgaatattttgacctttctctactttctagaaaatttct
tgaccatgtctgagtattcttttgatttttttttttatcccaagaacact
gcatgcacacattatagactgtagactgcaaacatctctctattttggta
tccaagactctagagcttattctagcatctaggttttttcccaagtacat
tggagtgtaagaaacgacctcccacacatttaaatgagaaattcttaaca
ctggctgtgtgaactcgggtgaaaaaaaattcacaatgttatttttgcta
atctcaaatgaagattcattattatccttctctataaatacagataacaa
aattctgatggtcactttgtaactactctgagccttattccattaccatt
gtaagagttatttaaaatgtttgtgcctttttatcattatgttgaaacta
tgggaatcatcaggtatatagaaaatacacagacagacatacacagaatc
atacttacagacacatagacacatgcacacatagacagacagacacacac
agaaacatacttacagacacacacaaacatagacacacacacacacaaac
atatatacacacacatgcacacacacagatacacacacatacacaaaaac
tcctaagcagttgtttttatgttggaaatacacttgaatataattgtctt
ctattataatattttattttatatacttaaatttttttttgagaaaaagg
ggttttcaagactatcaaaaggggtcatgtcacaccaaacacttcctaaa
gtctcgcctgttttcttgcagtgacatgctgcatttctgtatcactggca
gctcagcttaaggaatcagtcactgaagtttgatcatgctcttctgtagc
atactggatcttgtgaaggagatgtgttggatgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_166723721_166724266
seq2: B6Ng01-140H20.b_42_587 (reverse)

seq1  TGATGACTAATTGAAATGGCCTCAAACTGATTGTCAAGATGGTTATAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACTAATTGAAATGGCCTCAAACTGATTGTCAAGATGGTTATAAAA  50

seq1  CTCTTTGACTATATACTGTCAGTGTGTGATATACCTTAACTGGTGGTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGACTATATACTGTCAGTGTGTGATATACCTTAACTGGTGGTGTA  100

seq1  CAAATTAGATCTCCATAAAGCTACTGATAAATAAGAAATAAAGAAAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTAGATCTCCATAAAGCTACTGATAAATAAGAAATAAAGAAAAAGA  150

seq1  AGGAAGAGAAAGAGAAGCCAAAGAAAAGACTTGTGTAGTCTCTTGATTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGAAAGAGAAGCCAAAGAAAAGACTTGTGTAGTCTCTTGATTAT  200

seq1  CCCTTGGCTGCATTTCTTCAAAGCCTCCCAAGTTATTAGGAATGTGAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGGCTGCATTTCTTCAAAGCCTCCCAAGTTATTAGGAATGTGAAGG  250

seq1  AGTGAAGCCTCATCTCTCTCCTTGCCTTAGTAAGAACTAAGAACCCGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGCCTCATCTCTCTCCTTGCCTTAGTAAGAACTAAGAACCCGATC  300

seq1  TTTAGTTCTGGTTATAAATTAAATTATCTTTAGGCAGATTAACAAGAGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTCTGGTTATAAATTAAATTATCTTTAGGCAGATTAACAAGAGAC  350

seq1  GAGGCATACAAGTTTTACTAACTTTATGTGTCTGGGAAATTTCCACAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCATACAAGTTTTACTAACTTTATGTGTCTGGGAAATTTCCACAAGA  400

seq1  CAGTGAAGTCTGAAAAAAAAAAAGTCCAAAGCAAGACTCTTTTCTACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAAGTCTGAAAAAAAAAAAGTCCAAAGCAAGACTCTTTTCTACTTT  450

seq1  GTAAACAAAGAGTAATAAATCTTAGGGTAGAGGCTAGACATAAGAGAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACAAAGAGTAATAAATCTTAGGGTAGAGGCTAGACATAAGAGAATG  500

seq1  ACTAAACACAGGGAAAACAGTGGAGAGCAAATATACGGAAGAATTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACACAGGGAAAACAGTGGAGAGCAAATATACGGAAGAATTC  546

seq1: chr1_166614476_166615522
seq2: B6Ng01-140H20.g_66_1100

seq1  GAATTCACAGACAACGACAACCTTATCTGGTCCTTCAATAAAGAGATGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGACAACGACAACCTTATCTGGTCCTTCAATAAAGAGATGCC  50

seq1  ATCTTTCTTGTGTCCAGCTCACCCGCAGACAGTGCTAGTGCTGAAGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCTTGTGTCCAGCTCACCCGCAGACAGTGCTAGTGCTGAAGAAAA  100

seq1  CAACTTTCTGTTGAATATTTTGACCTTTCTCTACTTTCTAGAAAATTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTCTGTTGAATATTTTGACCTTTCTCTACTTTCTAGAAAATTTCT  150

seq1  TGACCATGTCTGAGTATTCTTTTGATTTTTTTTTTTATCCCAAGAACACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCATGTCTGAGTATTCTTTTGATTTTTTTTTTTATCCCAAGAACACT  200

seq1  GCATGCACACATTATAGACTGTAGACTGCAAACATCTCTCTATTTTGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCACACATTATAGACTGTAGACTGCAAACATCTCTCTATTTTGGTA  250

seq1  TCCAAGACTCTAGAGCTTATTCTAGCATCTAGGTTTTTTCCCAAGTACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGACTCTAGAGCTTATTCTAGCATCTAGGTTTTTTCCCAAGTACAT  300

seq1  TGGAGTGTAAGAAACGACCTCCCACACATTTAAATGAGAAATTCTTAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGTAAGAAACGACCTCCCACACATTTAAATGAGAAATTCTTAACA  350

seq1  CTGGCTGTGTGAACTCGGGTGAAAAAAAATTCACAATGTTATTTTTGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGTGTGAACTCGGGTGAAAAAAAATTCACAATGTTATTTTTGCTA  400

seq1  ATCTCAAATGAAGATTCATTATTATCCTTCTCTATAAATACAGATAACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAAATGAAGATTCATTATTATCCTTCTCTATAAATACAGATAACAA  450

seq1  AATTCTGATGGTCACTTTGTAACTACTCTGAGCCTTATTCCATTACCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGATGGTCACTTTGTAACTACTCTGAGCCTTATTCCATTACCATT  500

seq1  GTAAGAGTTATTTAAAATGTTTGTGCCTTTTTATCATTATGTTGAAACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAGTTATTTAAAATGTTTGTGCCTTTTTATCATTATGTTGAAACTA  550

seq1  TGGGAATCATCAGGTATATAGAAAATACACAGACAGACATACACAGAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATCATCAGGTATATAGAAAATACACAGACAGACATACACAGAATC  600

seq1  ATACTTACAGACACATAGACACATGCACACATAGACAGACAGACACACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTACAGACACATAGACACATGCACACATAGACAGACAGACACACAC  650

seq1  AGAAACATACTTACAGACACACACAAACATAGACACACACACACACAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACATACTTACAGACACACACAAACATAGACACACACACACACAAAC  700

seq1  ATATATACACACACATGCACACACACAGATACACACACATACACAAAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATACACACACATGCACACACACAGATACACACACATACACAAAAAC  750

seq1  TCCTAAGCAGTTGTTTTTATGTTGGAAATTACACTTGAATATAATTGTCT  800
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TCCTAAGCAGTTGTTTTTATGTTGGAAA-TACACTTGAATATAATTGTCT  799

seq1  TCTATTATAATATTTTATTTTATATACTTAATTTTTTTTTTGAGAAAAAG  850
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCTATTATAATATTTTATTTTATATACTTAAATTTTTTTTTGAGAAAAAG  849

seq1  GGGTTTTCAAGACTATCAAAAGGGGTCATGTCACACCAAACACTTCCTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTTCAAGACTATCAAAAGGGGTCATGTCACACCAAACACTTCCTAA  899

seq1  AGTCTCGCCTGTTTTCTTGCAGTGACATGCTGCCATTTCTGTATCACTGG  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AGTCTCGCCTGTTTTCTTGCAGTGACATGCTG-CATTTCTGTATCACTGG  948

seq1  CAAGCTCAGGCTTAAGGAATCAGTTCACTGAAGTTTGAATCATGCTCTTC  1000
      | |||||| |||||||||||||| ||||||||||||| ||||||||||||
seq2  C-AGCTCA-GCTTAAGGAATCAG-TCACTGAAGTTTG-ATCATGCTCTTC  994

seq1  TGTAGCATTACCTGGATCTTGTTGAAAGGAGATGTGGTTTGGATGAG  1047
      ||||||||   |||||||||||   |||||||||||  |||||||||
seq2  TGTAGCAT--ACTGGATCTTGT--GAAGGAGATGTG--TTGGATGAG  1035