BAC Information

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BAC

Clone NameB6Ng01-140L24
Chromosome1 (Build37)
Map Location 15,137,954 - 15,139,028
singlet/doubletsinglet
Overlap genenone
Upstream geneEya1, LOC665391, Msc, Smt3h2-ps4, EG665407, Trpa1, EG269105, LOC100039949
Downstream geneLOC100039959, Kcnb2, Ppia-ps1_109.1, Terf1, Gm106, LOC665434, 4930444P10Rik, Rpl7, Rdh10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140L24.bB6Ng01-140L24.g
ACCDH939391DH939392
length1,0661,085
definitionDH939391|Mus musculus domesticus DNA, BAC clone: B6Ng01-140L24, 5' end.DH939392|Mus musculus domesticus DNA, BAC clone: B6Ng01-140L24, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctccacttgagtgccgtgaggtaccatgatttggagcagcttgc
tcccatctcaactttaagaaggaaaatttaaactctgagtagttaagaat
aagcaactatttttgtgtttgtttgtttgtttttggtttttcaagacagg
gtttctctgtatagccctggctgtcctagaactcactttgtagaccaggc
tggcctcgaactcagaaatccacctgcctctgcctcccaagtgctggaat
taaaggcgtgtgccaccaccgcccggcgcaactattttttttaaggttat
accactagtaagtggcacactatagagtcaagttcatttctgtaagatgt
caagctattactgtgtctactttctcttttaattatgagaatgaactttg
tacaacatttcttgagcctgatacatgagcacatatgctaaaatttttgc
cttaaaaagttttctctttctcttatgaacttgactaagattgtgctaaa
tctaccaattattttattaaacctccaaaatattttgcaggctgctggac
aaatttccacactgcagaggatttatacacgagctcagtgggctgtgact
cctgcctcttgggtttctggcttttaggcattttaacaatcatgtagtct
ttaattagcctacttgtgagtgcctgcttctcacttttggcattaattgc
caattaataaaagcatggaggtgtcagtatgttggagccagtgccttgat
ggaaaatatatgtcagaaacacagctttcagatttggaccaggtgaaaag
gacagaatccgcaggccccacaggtcccaatgtacatttcttaaacttga
cccgatgattaggtcagctctctcaaattcatcgacaactccgtaaccag
aaaaatttagattaaagcttctgtaaattcttgtcagaattcacacactt
tgaatgccttgccatgtccaaaaaaaggactgaattacatgactacaatc
ctgtggtttaacttgatggtaacctcaattcaaagacacggagtccatgg
tgatagagtggcacgc
gaattctctgtagggctggattggtaaatagatactgtttgaatttgatt
ttgtcctggaatattttggtttctccatctatgttaattgagagtttttc
tgggtatagtagcctgggctggcttttgtattctcttagagtctgcatgg
actttgactaggctcttctggctttcatagtctctgttgagaagtctgat
ataattctgataggtctacatttgtatgttacttggcccttttcccttgc
agcttttactattatttctttattctgtgtgtttagtgttttgattatta
tgtgacaagaggattttctcttctggtcccatttatttggcattctatag
gctgcttgtacctttatggccaccctttctttaggttggggaagttttct
tcaatgattttgctgaagacatttttagattctttgagctgggaatcttt
gttctcctctattaccattattcttagatttggtctttacattgtgtcct
gaatttcctggatgctttgggttaggagttttttatgttttgacttttca
acagtgaatctcttctatggtatcttctgcacctgagattctcttgtcta
tttcttgtactccattggtgatacttacatctgtaattcctgacatcttt
cctagattttccatttccagatttacctgcatttgtgttttctttattgt
tactatttcgacttttagatcttagatcactatattcaattccttcacct
caatacatgggtttcctgtatttcgttcgttttcttgatgactgtttgtt
gtaatgttgattgtttgtttgatgttttttgagacccgtcctctagtgag
gctctgacagtcttgaattaatttttaaaaatggcgttctcaacgccgaa
tgtcaccttgctctgcctcccaccgctagtgattacaggcttgtgcttcc
ctctctcagctggtggatgaatctcctcctgggttttcattcctgtcaat
gacctttttcttaggcagaaggtactttccacgggagcccaatatgcggc
gttggaaaaataaggctcgttagaggggatacatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_15137954_15139028
seq2: B6Ng01-140L24.b_41_1106

seq1  GAATTCCTCCACTTGAGTGCCGTGAGGTACCATGATTTGGAGCAGCTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCACTTGAGTGCCGTGAGGTACCATGATTTGGAGCAGCTTGC  50

seq1  TCCCATCTCAACTTTAAGAAGGAAAATTTAAACTCTGAGTAGTTAAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATCTCAACTTTAAGAAGGAAAATTTAAACTCTGAGTAGTTAAGAAT  100

seq1  AAGCAACTATTTTTGTGTTTGTTTGTTTGTTTTTGGTTTTTCAAGACAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACTATTTTTGTGTTTGTTTGTTTGTTTTTGGTTTTTCAAGACAGG  150

seq1  GTTTCTCTGTATAGCCCTGGCTGTCCTAGAACTCACTTTGTAGACCAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCTGTATAGCCCTGGCTGTCCTAGAACTCACTTTGTAGACCAGGC  200

seq1  TGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGAAT  250

seq1  TAAAGGCGTGTGCCACCACCGCCCGGCGCAACTATTTTTTTTAAGGTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGCGTGTGCCACCACCGCCCGGCGCAACTATTTTTTTTAAGGTTAT  300

seq1  ACCACTAGTAAGTGGCACACTATAGAGTCAAGTTCATTTCTGTAAGATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTAGTAAGTGGCACACTATAGAGTCAAGTTCATTTCTGTAAGATGT  350

seq1  CAAGCTATTACTGTGTCTACTTTCTCTTTTAATTATGAGAATGAACTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTATTACTGTGTCTACTTTCTCTTTTAATTATGAGAATGAACTTTG  400

seq1  TACAACATTTCTTGAGCCTGATACATGAGCACATATGCTAAAATTTTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACATTTCTTGAGCCTGATACATGAGCACATATGCTAAAATTTTTGC  450

seq1  CTTAAAAAGTTTTCTCTTTCTCTTATGAACTTGACTAAGATTGTGCTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAAGTTTTCTCTTTCTCTTATGAACTTGACTAAGATTGTGCTAAA  500

seq1  TCTACCAATTATTTTATTAAACCTCCAAAATATTTTGCAGGCTGCTGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCAATTATTTTATTAAACCTCCAAAATATTTTGCAGGCTGCTGGAC  550

seq1  AAATTTCCACACTGCAGAGGATTTATACACGAGCTCAGTGGGCTGTGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCCACACTGCAGAGGATTTATACACGAGCTCAGTGGGCTGTGACT  600

seq1  CCTGCCTCTTGGGTTTCTGGCTTTTAGGCATTTTAACAATCATGTAGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTCTTGGGTTTCTGGCTTTTAGGCATTTTAACAATCATGTAGTCT  650

seq1  TTAATTAGCCTACTTGTGAGTGCCTGCTTCTCACTTTTGGCATTAATTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAGCCTACTTGTGAGTGCCTGCTTCTCACTTTTGGCATTAATTGC  700

seq1  CAATTAATAAAAGCATGGAGGTGTCAGTATGTTGGAGCCAGTGCCTTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAATAAAAGCATGGAGGTGTCAGTATGTTGGAGCCAGTGCCTTGAT  750

seq1  GGAAAATATATGTCAGAAACACAGCTTTCAGATTTGGACCAGGTGAAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAATATATGTCAGAAACACAGCTTTCAGATTTGGACCAGGTGAAAAG  800

seq1  GACAGACTCCACAGGCCCCACAGGTCCCAGTTTTGCTTTCTTAAACTTGA  850
      |||||| ||| |||||||||||||||||| | |   ||||||||||||||
seq2  GACAGAATCCGCAGGCCCCACAGGTCCCAATGTACATTTCTTAAACTTGA  850

seq1  CCCGATGGTTAGGTCAGCTCTCTCAAATTCCTCAACAACTCCGTAACCAG  900
      ||||||| |||||||||||||||||||||| || ||||||||||||||||
seq2  CCCGATGATTAGGTCAGCTCTCTCAAATTCATCGACAACTCCGTAACCAG  900

seq1  -AAAATTTAGGTTAAAAGCTTCTGTAAATACGTGTCAGAATTCATACACC  949
       ||||||||| || ||||||||||||||| | |||||||||||| |||| 
seq2  AAAAATTTAGATT-AAAGCTTCTGTAAATTCTTGTCAGAATTCACACACT  949

seq1  TTGAAATGCCTGCCCATGTCCCAAAGATAGGA-TGATTTACATGACTACA  998
      ||| |||||||  |||||| ||||| | |||| ||| |||||||||||| 
seq2  TTG-AATGCCTTGCCATGT-CCAAAAAAAGGACTGAATTACATGACTAC-  996

seq1  AATCACTGTGTGTTTAACTTGATGGTTAAGCACAAATCCAAAGACACGGA  1048
      |||| ||||| |||||||||||||| ||| | | ||| ||||||||||||
seq2  AATC-CTGTG-GTTTAACTTGATGG-TAACCTC-AATTCAAAGACACGGA  1042

seq1  GTTCACTGGTGATAGGTGTGGCCACGC  1075
      || || |||||||| | |||| |||||
seq2  GTCCA-TGGTGATA-GAGTGG-CACGC  1066