BAC Information

Click to search

BAC

Clone NameB6Ng01-140N24
Chromosome1 (Build37)
Map Location 40,359,405 - 40,531,738
singlet/doubletdoublet
Overlap geneIl1r1, Il1rl2, Il1rl1, Il18r1
Upstream geneNpas2, LOC100041999, Rpl31, Tbc1d8, D1Bwg0212e, Rnf149, EG329126, Creg2, 4933400N17Rik, LOC100042065, Map4k4, Il1r2
Downstream geneIl18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1, LOC100041441
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-140N24.bB6Ng01-140N24.g
ACCDH939486DH939487
length1541,072
definitionDH939486|Mus musculus domesticus DNA, BAC clone: B6Ng01-140N24, 5' end.DH939487|Mus musculus domesticus DNA, BAC clone: B6Ng01-140N24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,359,405 - 40,359,558)(40,530,674 - 40,531,738)
sequence
tctgatctttctatcccactctgcctgcctctgtctgggtaccacttcgg
aggcatcctgtatcccaggcacaggaacccttcttagtttctttggctag
gatactacctatttcactctgttgttgctgttctcctcctcctcctcctc
ctcc
gaattccaaggtgtgatcatgaaaagtgactctgggcgagcttctgttgt
tcagctctctatactcatgtgaagcactgcctttgaaccatctcatggtg
gctgtttcattcctgtgcactggtgcagatatgccacatggcttcagata
aaaaggttctccctctaccacatgaatttgtgatcggtgaatacaacttt
ctacagcagattgcaagaggaaagggagataaaacaggacaagggtgatt
tttccctgatccccctccatgagtataaacagtcagtaagaaagctggga
gaaatctcagtatcgtactcctgtgctgtcttctgtcttaagagaagaca
tacaggagataagacactttcagaaccaagatgaagataaagctgacggc
ttcccctaaacagaaagttgaagagcttagccaaccctcactcgaaggct
tggaggccacatcttcagagtatgacactttataacttacttttaagaaa
aggcatagaattcatagggtcatcatattccctcgaaatgtcagcaccat
ggaatctccatggggaagacaagaaacctgggtacacatgttcatctcag
tcaaagcaggtctcatgtccctttgtccaaccagtctgtctcctcgatct
ggggaggttcgggagagttaaaggagttcttgggtagctaaaatcctcac
ggtgggcatgtttcccataactgaccaagaactgatgaatacagaccatc
ctttcccttcccatctccccgtctcttcgctcggattctttagctttaga
agagtggccctctgttctaaattacagttgttgaacagttctcaaagcca
ctccattggatctagaatgctcttcattctttatttaggaaaatcggtct
gttaagtacatacagtattttcttaagaccatacacaaaaatgctgtctc
cgttgctagggtctattggtcagagcaacctttgggagggcgattacctt
agatggttaccacagccaagaaaggaagtgtctcaatgataaaatctact
tcaaagtttaagagattgacgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_40359405_40359558
seq2: B6Ng01-140N24.b_52_205

seq1  TCTGATCTTTCTATCCCACTCTGCCTGCCTCTGTCTGGGTACCACTTCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCTTTCTATCCCACTCTGCCTGCCTCTGTCTGGGTACCACTTCGG  50

seq1  AGGCATCCTGTATCCCAGGCACAGGAACCCTTCTTAGTTTCTTTGGCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATCCTGTATCCCAGGCACAGGAACCCTTCTTAGTTTCTTTGGCTAG  100

seq1  GATACTACCTATTTCACTCTGTTGTTGCTGTTCTCCTCCTCCTCCTCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTACCTATTTCACTCTGTTGTTGCTGTTCTCCTCCTCCTCCTCCTC  150

seq1  CTCC  154
      ||||
seq2  CTCC  154

seq1: chr1_40530674_40531738
seq2: B6Ng01-140N24.g_68_1139 (reverse)

seq1  GCGTCA--CTCTTGAACTTTGAAGTAGATCTAACATTTGAGCCACTTCCT  48
      ||||||  ||||| ||||||||||||||| | |   ||||| ||||||||
seq2  GCGTCAATCTCTTAAACTTTGAAGTAGATTTTATCATTGAGACACTTCCT  50

seq1  TCTTTTGCTGTGGTTAACATCTAAGTTAA-CGCCCTCCCAAAGGTTGCTC  97
      |  || |||||||| | |||||||| ||| ||||||||||||||||||||
seq2  TTCTTGGCTGTGGTAACCATCTAAGGTAATCGCCCTCCCAAAGGTTGCTC  100

seq1  TGAACAATAGACCCTAGCAACGGAGACAACA-TTTTGTGTATGGTCTTAA  146
      ||| |||||||||||||||||||||||| || ||||||||||||||||||
seq2  TGACCAATAGACCCTAGCAACGGAGACAGCATTTTTGTGTATGGTCTTAA  150

seq1  GAAAATACTGTATGTACTTAACAGACCGATTTT-CTAAAT-AAGGATGAA  194
      ||||||||||||||||||||||||||||||||| |||||| ||| |||||
seq2  GAAAATACTGTATGTACTTAACAGACCGATTTTCCTAAATAAAGAATGAA  200

seq1  GGGCATTCTAGATCCAGTGGAGTGGCTTTGAGAACTGTTCAACAACTGTA  244
      | |||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAGCATTCTAGATCCAATGGAGTGGCTTTGAGAACTGTTCAACAACTGTA  250

seq1  ATTTAGAACAGAGGGCCACTCTTCTAAAGCTAAAGAATCCGAGCGAAGAG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAACAGAGGGCCACTCTTCTAAAGCTAAAGAATCCGAGCGAAGAG  300

seq1  ACGGGGAGATGGGAAGGGAAAGGATGGTCTGTATTCATCAGTTCTTGGTC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGGAGATGGGAAGGGAAAGGATGGTCTGTATTCATCAGTTCTTGGTC  350

seq1  AGTTATGTGGAAACATG-CCACCGTGAGGA-TTTAGCTACCCAAGAACTC  392
      ||||||| ||||||||| |||||||||||| |||||||||||||||||||
seq2  AGTTATG-GGAAACATGCCCACCGTGAGGATTTTAGCTACCCAAGAACTC  399

seq1  CTTTAACTCTCCCGAACCTCCCCAGATCGAGGAGACAGACTGGTTGGACA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACTCTCCCGAACCTCCCCAGATCGAGGAGACAGACTGGTTGGACA  449

seq1  AAGGGACATGAGACCTGCTTTGACTGAGATGAACATGTGTACCCAGGTTT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACATGAGACCTGCTTTGACTGAGATGAACATGTGTACCCAGGTTT  499

seq1  CTTGTCTTCCCCATGGAGATTCCATGGTGCTGACATTTCGAGGGAATATG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTTCCCCATGGAGATTCCATGGTGCTGACATTTCGAGGGAATATG  549

seq1  ATGACCCTATGAATTCTATGCCTTTTCTTAAAAGTAAGTTATAAAGTGTC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCCTATGAATTCTATGCCTTTTCTTAAAAGTAAGTTATAAAGTGTC  599

seq1  ATACTCTGAAGATGTGGCCTCCAAGCCTTCGAGTGAGGGTTGGCTAAGCT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCTGAAGATGTGGCCTCCAAGCCTTCGAGTGAGGGTTGGCTAAGCT  649

seq1  CTTCAACTTTCTGTTTAGGGGAAGCCGTCAGCTTTATCTTCATCTTGGTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACTTTCTGTTTAGGGGAAGCCGTCAGCTTTATCTTCATCTTGGTT  699

seq1  CTGAAAGTGTCTTATCTCCTGTATGTCTTCTCTTAAGACAGAAGACAGCA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGTGTCTTATCTCCTGTATGTCTTCTCTTAAGACAGAAGACAGCA  749

seq1  CAGGAGTACGATACTGAGATTTCTCCCAGCTTTCTTACTGACTGTTTATA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTACGATACTGAGATTTCTCCCAGCTTTCTTACTGACTGTTTATA  799

seq1  CTCATGGAGGGGGATCAGGGAAAAATCACCCTTGTCCTGTTTTATCTCCC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGAGGGGGATCAGGGAAAAATCACCCTTGTCCTGTTTTATCTCCC  849

seq1  TTTCCTCTTGCAATCTGCTGTAGAAAGTTGTATTCACCGATCACAAATTC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCTTGCAATCTGCTGTAGAAAGTTGTATTCACCGATCACAAATTC  899

seq1  ATGTGGTAGAGGGAGAACCTTTTTATCTGAAGCCATGTGGCATATCTGCA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTAGAGGGAGAACCTTTTTATCTGAAGCCATGTGGCATATCTGCA  949

seq1  CCAGTGCACAGGAATGAAACAGCCACCATGAGATGGTTCAAAGGCAGTGC  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCACAGGAATGAAACAGCCACCATGAGATGGTTCAAAGGCAGTGC  999

seq1  TTCACATGAGTATAGAGAGCTGAACAACAGAAGCTCGCCCAGAGTCACTT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATGAGTATAGAGAGCTGAACAACAGAAGCTCGCCCAGAGTCACTT  1049

seq1  TTCATGATCACACCTTGGAATTC  1065
      |||||||||||||||||||||||
seq2  TTCATGATCACACCTTGGAATTC  1072