BAC Information

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BAC

Clone NameB6Ng01-141B18
Chromosome1 (Build37)
Map Location 123,079,872 - 123,227,267
singlet/doubletdoublet
Overlap geneInsig2
Upstream gene3110009E18Rik, Steap3, C1ql2, Marco, En1, AI848258
Downstream geneCcdc93, LOC100041926, Htr5b, LOC666656, Ddx18, LOC666971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141B18.bB6Ng01-141B18.g
ACCDH939653DH939654
length1,0721,047
definitionDH939653|Mus musculus domesticus DNA, BAC clone: B6Ng01-141B18, 5' end.DH939654|Mus musculus domesticus DNA, BAC clone: B6Ng01-141B18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,079,872 - 123,080,954)(123,226,194 - 123,227,267)
sequence
gaattcaaaccgtcagagccggtggcaagcaacttcacccactgagatat
ctccgtggactctgatgtccaaagttagtagagagtgtatattgtgcaac
tgtcaaaaaggatactcatcttaatgaaaaataaatttcatgttgctaaa
ggtttacaaataaagactaaatgtagaaagacacccaaagggcacaaact
ggcatctcctagcaaagaaaacatatacttcaagaaatactgaaatggac
ttcaggaggggtaaggaggctgactctgttgataaagtgccaactgtgaa
accgtgaggacctgaatttggattctcagaacccatgggtggtttttgtg
tttgttttgttttgtttttaagcaaggtgtaatagcgtatagtctcaaat
ctggggacacagagactgtcagatccctaaagctcaccagccaatctagc
caatccagggagatacaaggtctcaaacagtaagactcagagtggttaag
gaacacacacaacaccaacctttgatctccacacatgtgtgcatacacac
acactcacacacacacacgtgttctacatgtgtgtgaacacagatgaaga
tgtgtacacattcatattcaacacactagcagcacaccaactagaagata
ttgaggttccgttttcctatctaataatgcacacatactattctagatac
tgtaacttgattcaactgacaaaaatcttagaagtctcttcacatcgagt
gttggagaagatgtgggaccgtcaatctgtgaacaaagcttctaggaaga
aaagagtcactacagaaaatgggttggcatttaaatcctatacaacttga
cactcggctctggtttataactaaggaaaatcttttacagggtaataaga
caaacgtttgtggagtattccgatgatggtgggcatgatagtggggctaa
tgccaggaatgagtagtgtatgaaagatgtgatacggcccaactagcatg
tgcagcagtagctagatgaacagagttgcatcattcaatgaatagatcac
aggcagtttggtcttgtcatga
gaattcactcataccagtctttaatcaccccattcatgagtggagcccag
attgcataattgctgtttattaggccctgcctatatcttaaaggttctac
tacagtggttgatatccccatactagggcagatttccataagcctggcat
tagagaagctatggccaaacaaaagcagtatttcacattaaaacctccag
ctttggcgatacagacacatgacccctgtgaccccagcacttaggaggca
gaggctgaaggatctctacaggttcaaggccagcctagcctgcatagtga
atttcaggtcagcccctgctacacggtgagctcttgactcaaatatgacc
acaaacaaacaaacaaacactaccataaaagaaagataagataggtttta
gaatttggggttccagtcattgaatagaaaaacctgccatgttctttggt
tttactgtctcgatgctttttatttgagtaagatttccaagtgccaggtt
ctcagaaccttaactgaagtatccgcccacatacaataattaccattaag
gctgaagatgtctgctagctgctcaggttgaagttgtagaagagataaat
gaacttgtaaatgattcattttataatctcaaagaagcaaaagttcttac
tgttttttttgctttgtagaagtaaatgaagcttttagggaagtaaaagc
agcccagtgacttctgtggatgtttgcttatatttagctgcagtgtttat
tcttttctaatttgcccaatggtctctctcattgaaagacaacaagaagt
attattggggcagggcaacagcagactatcaaatcactgatatttctagt
ggttaaaaggatttaaaaattagcaggttcactattttacttcatatcta
taaaagaaaaacctagaaaaggaccatggacctgacttcacatatgagtc
agtgctgagactcactgacttcaaagtcttcactagcagtcatgcccaga
ccaacttaagtagccaaaaaattgatctcaccgctctctagtcatac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_123079872_123080954
seq2: B6Ng01-141B18.b_48_1119

seq1  GAATTCAAACCGTCAGAGCCGGTGGCAAGCAACTTCACCCACTGAGATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACCGTCAGAGCCGGTGGCAAGCAACTTCACCCACTGAGATAT  50

seq1  CTCCGTGGACTCTGATGTCCAAAGTTAGTAGAGAGTGTATATTGTGCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGTGGACTCTGATGTCCAAAGTTAGTAGAGAGTGTATATTGTGCAAC  100

seq1  TGTCAAAAAGGATACTCATCTTAATGAAAAATAAATTTCATGTTGCTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAAAGGATACTCATCTTAATGAAAAATAAATTTCATGTTGCTAAA  150

seq1  GGTTTACAAATAAAGACTAAATGTAGAAAGACACCCAAAGGGCACAAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTACAAATAAAGACTAAATGTAGAAAGACACCCAAAGGGCACAAACT  200

seq1  GGCATCTCCTAGCAAAGAAAACATATACTTCAAGAAATACTGAAATGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTCCTAGCAAAGAAAACATATACTTCAAGAAATACTGAAATGGAC  250

seq1  TTCAGGAGGGGTAAGGAGGCTGACTCTGTTGATAAAGTGCCAACTGTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGAGGGGTAAGGAGGCTGACTCTGTTGATAAAGTGCCAACTGTGAA  300

seq1  ACCGTGAGGACCTGAATTTGGATTCTCAGAACCCATGGGTGGTTTTTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTGAGGACCTGAATTTGGATTCTCAGAACCCATGGGTGGTTTTTGTG  350

seq1  TTTGTTTTGTTTTGTTTTTAAGCAAGGTGTAATAGCGTATAGTCTCAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTTTTGTTTTTAAGCAAGGTGTAATAGCGTATAGTCTCAAAT  400

seq1  CTGGGGACACAGAGACTGTCAGATCCCTAAAGCTCACCAGCCAATCTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGACACAGAGACTGTCAGATCCCTAAAGCTCACCAGCCAATCTAGC  450

seq1  CAATCCAGGGAGATACAAGGTCTCAAACAGTAAGACTCAGAGTGGTTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCAGGGAGATACAAGGTCTCAAACAGTAAGACTCAGAGTGGTTAAG  500

seq1  GAACACACACAACACCAACCTTTGATCTCCACACATGTGTGCATACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACACACAACACCAACCTTTGATCTCCACACATGTGTGCATACACAC  550

seq1  ACACTCACACACACACACGTGTTCTACATGTGTGTGAACACAGATGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCACACACACACACGTGTTCTACATGTGTGTGAACACAGATGAAGA  600

seq1  TGTGTACACATTCATATTCAACACACTAGCAGCACACCAACTAGAAGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACACATTCATATTCAACACACTAGCAGCACACCAACTAGAAGATA  650

seq1  TTGAGGTTCCG-TTTCCTATCTAATAATGCACACATACTATTCTAGATAC  699
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGTTCCGTTTTCCTATCTAATAATGCACACATACTATTCTAGATAC  700

seq1  TGTAACTTGATTCAACTGACAAAAATCTTAGAAGTCTCTTCACATCGAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTTGATTCAACTGACAAAAATCTTAGAAGTCTCTTCACATCGAGT  750

seq1  GTTGGAGAAGATGTGGGACCGCCAATCTGTGAACAAAGCTTCTAGAAAGA  799
      ||||||||||||||||||||| ||||||||||||||||||||||| ||||
seq2  GTTGGAGAAGATGTGGGACCGTCAATCTGTGAACAAAGCTTCTAGGAAGA  800

seq1  AAAGAGTCACCACAGAAAATGGGTTGGCATTTAAATCCTATACAACTTGA  849
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTCACTACAGAAAATGGGTTGGCATTTAAATCCTATACAACTTGA  850

seq1  CAACTCGGCTCTGGTTTATAACTAAGGAAAATCTTTTACAGGTAAATAAG  899
      | ||||||||||||||||||||||||||||||||||||||||  ||||||
seq2  C-ACTCGGCTCTGGTTTATAACTAAGGAAAATCTTTTACAGGGTAATAAG  899

seq1  ACAAAACGTTTGT-GAGTATTCAGAATGATGGTGGGCATGATAGTGGGGC  948
      || |||||||||| |||||||| | |||||||||||||||||||||||||
seq2  AC-AAACGTTTGTGGAGTATTCCG-ATGATGGTGGGCATGATAGTGGGGC  947

seq1  TAAGGCCAGGAATGAGGAGTGTATGAAAAGATGTAGAATACGGCACAACT  998
      ||| |||||||||||| |||||||| ||||||||   ||||||| |||| 
seq2  TAATGCCAGGAATGAGTAGTGTATG-AAAGATGT--GATACGGCCCAAC-  993

seq1  TAGCATGTGCAGCAGGTAGCCAAGATGAACAGAGTATGCTATCATTCAAT  1048
      |||||||||||||| |||| | ||||||||||||| ||| ||||||||||
seq2  TAGCATGTGCAGCA-GTAG-CTAGATGAACAGAGT-TGC-ATCATTCAAT  1039

seq1  GGAGTAGATCACAGGCAGTATGGTCCTTGTCATGA  1083
       || ||||||||||||||| |||| ||||||||||
seq2  -GAATAGATCACAGGCAGTTTGGT-CTTGTCATGA  1072

seq1: chr1_123226194_123227267
seq2: B6Ng01-141B18.g_68_1114 (reverse)

seq1  GTATGACTTAAGAGGGCGGTGAGATCATATTTATTTTGGCTTACTTTAAA  50
      ||||||||  |||| |||||||||||| |||  ||||||| |||||  ||
seq2  GTATGACT--AGAGAGCGGTGAGATCA-ATT--TTTTGGC-TACTT--AA  42

seq1  GTTGGTTCTGTGCCATTGGACTGCTGGTGAAGACTTTTTGAAAGTTCAGT  100
      ||||| |||| | |||  ||||||| ||||||||  ||||||   |||| 
seq2  GTTGG-TCTG-GGCAT--GACTGCTAGTGAAGAC--TTTGAA--GTCAG-  83

seq1  TGTGTCTCAGCACTGACTCCATATGTGAAGTCAGGTCCAATTGGTCCTTT  150
      || ||||||||||||||| ||||||||||||||||||||  ||||||   
seq2  TGAGTCTCAGCACTGACT-CATATGTGAAGTCAGGTCCA--TGGTCC---  127

seq1  TTTTCTAGGTTTTTCTTTTTATAGATATGAAGTAAAATAGTGAACCTGCT  200
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGGTTTTTC-TTTTATAGATATGAAGTAAAATAGTGAACCTGCT  176

seq1  AATTTTTAAAGTCCTTTTAACCACTAGAAATATCAGTGATTTGATAGTTC  250
      |||||||||| |||||||||||||||||||||||||||||||||||| ||
seq2  AATTTTTAAA-TCCTTTTAACCACTAGAAATATCAGTGATTTGATAG-TC  224

seq1  TGCTGTTGCCCTGCCCCAATAATACTTCTTGTTTGTTCTTTCAATGAGAG  300
      |||||||||||||||||||||||||||||||||   ||||||||||||||
seq2  TGCTGTTGCCCTGCCCCAATAATACTTCTTGTT--GTCTTTCAATGAGAG  272

seq1  AGACCATTGGGCAAATTAG-AAAGAATAAACACTGCAGCTAAATATAAGC  349
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGACCATTGGGCAAATTAGAAAAGAATAAACACTGCAGCTAAATATAAGC  322

seq1  AAACATCCACAGAAGTCACTGGGCTGCTTTTACTTCCCTAAAAGCTTCAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCCACAGAAGTCACTGGGCTGCTTTTACTTCCCTAAAAGCTTCAT  372

seq1  TTACTTCTACAAAGCAAAAAAAACAGTAAGAACTTTTGCTTCTTTGAGAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCTACAAAGCAAAAAAAACAGTAAGAACTTTTGCTTCTTTGAGAT  422

seq1  TATAAAATGAATCATTTACAAGTTCATTTATCTCTTCTACAACTTCAACC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATGAATCATTTACAAGTTCATTTATCTCTTCTACAACTTCAACC  472

seq1  TGAGCAGCTAGCAGACATCTTCAGCCTTAATGGTAATTATTGTATGTGGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGCTAGCAGACATCTTCAGCCTTAATGGTAATTATTGTATGTGGG  522

seq1  CGGATACTTCAGTTAAGGTTCTGAGAACCTGGCACTTGGAAATCTTACTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATACTTCAGTTAAGGTTCTGAGAACCTGGCACTTGGAAATCTTACTC  572

seq1  AAATAAAAAGCATCGAGACAGTAAAACCAAAGAACATGGCAGGTTTTTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAAGCATCGAGACAGTAAAACCAAAGAACATGGCAGGTTTTTCT  622

seq1  ATTCAATGACTGGAACCCCAAATTCTAAAACCTATCTTATCTTTCTTTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATGACTGGAACCCCAAATTCTAAAACCTATCTTATCTTTCTTTTA  672

seq1  TGGTAGTGTTTGTTTGTTTGTTTGTGGTCATATTTGAGTCAAGAGCTCAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTGTTTGTTTGTTTGTTTGTGGTCATATTTGAGTCAAGAGCTCAC  722

seq1  CGTGTAGCAGGGGCTGACCTGAAATTCACTATGCAGGCTAGGCTGGCCTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTAGCAGGGGCTGACCTGAAATTCACTATGCAGGCTAGGCTGGCCTT  772

seq1  GAACCTGTAGAGATCCTTCAGCCTCTGCCTCCTAAGTGCTGGGGTCACAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGTAGAGATCCTTCAGCCTCTGCCTCCTAAGTGCTGGGGTCACAG  822

seq1  GGGTCATGTGTCTGTATCGCCAAAGCTGGAGGTTTTAATGTGAAATACTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCATGTGTCTGTATCGCCAAAGCTGGAGGTTTTAATGTGAAATACTG  872

seq1  CTTTTGTTTGGCCATAGCTTCTCTAATGCCAGGCTTATGGAAATCTGCCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGTTTGGCCATAGCTTCTCTAATGCCAGGCTTATGGAAATCTGCCC  922

seq1  TAGTATGGGGATATCAACCACTGTAGTAGAACCTTTAAGATATAGGCAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATGGGGATATCAACCACTGTAGTAGAACCTTTAAGATATAGGCAGG  972

seq1  GCCTAATAAACAGCAATTATGCAATCTGGGCTCCACTCATGAATGGGGTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAATAAACAGCAATTATGCAATCTGGGCTCCACTCATGAATGGGGTG  1022

seq1  ATTAAAGACTGGTATGAGTGAATTC  1074
      |||||||||||||||||||||||||
seq2  ATTAAAGACTGGTATGAGTGAATTC  1047