BAC Information

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BAC

Clone NameB6Ng01-141B24
Chromosome1 (Build37)
Map Location 103,939,014 - 104,065,090
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041909, LOC100040993, LOC383650
Downstream geneLOC100041056, LOC100041067
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141B24.bB6Ng01-141B24.g
ACCDH939665DH939666
length1,086568
definitionDH939665|Mus musculus domesticus DNA, BAC clone: B6Ng01-141B24, 5' end.DH939666|Mus musculus domesticus DNA, BAC clone: B6Ng01-141B24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,064,000 - 104,065,090)(103,939,014 - 103,939,585)
sequence
gaattcactgctattgggaccttcaatctaagtcccggctgccgttaatt
acttgcaagtcataaataccactcctgttccttcaggaatatcttgccat
atttgtaattattgtggtatataagcattatagccagatatggatagtga
ctgctttcctatgtggcatctttcatggttcctttcaacactattgcagc
taatcctcaggaaggcctcaagctcagatctgcattgatttttccaagta
atgtgttgaaagtttgtggtatcttctgcagtaggtttgaaattctggca
ccactaatgacaacagttatatcctgtattgtttgtgttctcttggatgt
ccctaactaataattcaaaacttttcctaaactaggatttttgttagata
aataataggttttatttgtgggtatgcattgtccttcaaagtagtataac
tttaatatatatacatatatatgcacatataatatgcaaacatatgcaaa
attgaataaacacaaaatattataatttcttaggccttttcacaccattt
tattatttatctagccactttgatctttaaataatgttcaattcaaaaat
taatatctctagtgtccatttctccatgtatatgggtgagaaaacaaata
agagaaataccttcaaaactctggcaaacaccagacattgtggcctgttt
ctttagttgtagcactctggaggccaaagcaggcatgaataacacagtgt
gttccatgccccaagaatccaagcaaaattttgttggcatgttgttatat
atagtcttattacttttaaagtgtaaaagcaaaaaccgtggcataaagta
cttgctatagaaacatgaaggcctatgtttacaggtgaacatgaactctc
ttaagaaaataagtgaggaagcaaacaacaaggttgtcgcaggattctcc
ctgtccaatatattagtgaagaattggtctgtgattgacatgggaagaga
aggtggagctaagattgcgaaactagagcatctcagaagtaagaatcaag
aagatgctacaaccatgtaatccacatggcattttc
agtcagtactcaaaggaatgcatatggagttttgtgaaaaataccaaaca
taccttagaccctagcaaaaggcagagaagaaacatttctagaagatggt
tgagctcctacagaactcctataaaaggaaccagggccataatatgtgac
attgatgtaacagtggaggaattggatcattgtttgtaaaggtcttgcac
tcaagataggggttaagctaaactagaacgcatggctcatgtgctcaacc
ccaggaatttgagctatatcctataatcaatatcatagcaggaaaaagaa
atgcattgctatcatctgatgtccaggtgtcttaacaagcttaatctccg
caggatcttttagtatctcacatttgagtaatcttctgagcattctcttg
ggtcttggcaagcactactaatctaatgaaatgatggcttttgaggctaa
ggttccacattaaaacacaggtcttgcattcaacatttttgtgattttaa
gattcatttttttctgaggatgtctcctcttaattggatcaccaatatac
tgttaatttgtctatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_104064000_104065090
seq2: B6Ng01-141B24.b_49_1134 (reverse)

seq1  GAAAATGCCATGTGGATT-CATGTTTGTAGCCATCTTCCTTTGA-TCTTA  48
      |||||||||||||||||| |||| |||||| |||||||  |||| |||||
seq2  GAAAATGCCATGTGGATTACATGGTTGTAG-CATCTTC--TTGATTCTTA  47

seq1  C-TCTGAGATGCTCCTTGTCTCTGCAATTCTTAGCTCCACCTCTCT-TTC  96
      | ||||||||||| || || || |||| |||||||||||||| ||| |||
seq2  CTTCTGAGATGCT-CTAGTTTC-GCAA-TCTTAGCTCCACCT-TCTCTTC  93

seq1  CCATGTCCAATCACAGACCAATTCTTCACTAATATAATTGGACAGGGAGA  146
      |||||| |||||||||||||||||||||||||||| ||||||||||||||
seq2  CCATGT-CAATCACAGACCAATTCTTCACTAATAT-ATTGGACAGGGAGA  141

seq1  ATCCTGCGACAACCTTGTTGTTTGCTTCCTCACTTATTTTCTTAAGAGAG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGCGACAACCTTGTTGTTTGCTTCCTCACTTATTTTCTTAAGAGAG  191

seq1  TTCATGTTCACCTGTAAACATAGGCCTTCATGTTTCTATAGCAAGTACTT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTTCACCTGTAAACATAGGCCTTCATGTTTCTATAGCAAGTACTT  241

seq1  TATGCCACGGTTTTTGCTTTTACACCTTAAAAGTAATAAGACTATATATA  296
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TATGCCACGGTTTTTGCTTTTACACTTTAAAAGTAATAAGACTATATATA  291

seq1  ACAACATGCCAACAAAATTTTGCTTGGATTCTTGGGGCATGGAACACACT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATGCCAACAAAATTTTGCTTGGATTCTTGGGGCATGGAACACACT  341

seq1  GTGTTATTCATGCCTGCTTTGGCCTCCAGAGTGCTACAACTAAAGAAACA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTATTCATGCCTGCTTTGGCCTCCAGAGTGCTACAACTAAAGAAACA  391

seq1  GGCCACAATGTCTGGTGTTTGCCAGAGTTTTGAAGGTATTTCTCTTATTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACAATGTCTGGTGTTTGCCAGAGTTTTGAAGGTATTTCTCTTATTT  441

seq1  GTTTTCTCACCCATATACATGGAGAAATGGACACTAGAGATATTAATTTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTCACCCATATACATGGAGAAATGGACACTAGAGATATTAATTTT  491

seq1  TGAATTGAACATTATTTAAAGATCAAAGTGGCTAGATAAATAATAAAATG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGAACATTATTTAAAGATCAAAGTGGCTAGATAAATAATAAAATG  541

seq1  GTGTGAAAAGGCCTAAGAAATTATAATATTTTGTGTTTATTCAATTTTGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGAAAAGGCCTAAGAAATTATAATATTTTGTGTTTATTCAATTTTGC  591

seq1  ATATGTTTGCATATTATATGTGCATATATATGTATATATATTAAAGTTAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTTGCATATTATATGTGCATATATATGTATATATATTAAAGTTAT  641

seq1  ACTACTTTGAAGGACAATGCATACCCACAAATAAAACCTATTATTTATCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTTGAAGGACAATGCATACCCACAAATAAAACCTATTATTTATCT  691

seq1  AACAAAAATCCTAGTTTAGGAAAAGTTTTGAATTATTAGTTAGGGACATC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAATCCTAGTTTAGGAAAAGTTTTGAATTATTAGTTAGGGACATC  741

seq1  CAAGAGAACACAAACAATACAGGATATAACTGTTGTCATTAGTGGTGCCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGAACACAAACAATACAGGATATAACTGTTGTCATTAGTGGTGCCA  791

seq1  GAATTTCAAACCTACTGCAGAAGATACCACAAACTTTCAACACATTACTT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCAAACCTACTGCAGAAGATACCACAAACTTTCAACACATTACTT  841

seq1  GGAAAAATCAATGCAGATCTGAGCTTGAGGCCTTCCTGAGGATTAGCTGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAATCAATGCAGATCTGAGCTTGAGGCCTTCCTGAGGATTAGCTGC  891

seq1  AATAGTGTTGAAAGGAACCATGAAAGATGCCACATAGGAAAGCAGTCACT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGTTGAAAGGAACCATGAAAGATGCCACATAGGAAAGCAGTCACT  941

seq1  ATCCATATCTGGCTATAATGCTTATATACCACAATAATTACAAATATGGC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATATCTGGCTATAATGCTTATATACCACAATAATTACAAATATGGC  991

seq1  AAGATATTCCTGAAGGAACAGGAGTGGTATTTATGACTTGCAAGTAATTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATTCCTGAAGGAACAGGAGTGGTATTTATGACTTGCAAGTAATTA  1041

seq1  ACGGCAGCCGGGACTTAGATTGAAGGTCCCAATAGCAGTGAATTC  1091
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGCAGCCGGGACTTAGATTGAAGGTCCCAATAGCAGTGAATTC  1086

seq1: chr1_103939014_103939585
seq2: B6Ng01-141B24.g_70_643

seq1  GAATTCAGTCAGTACTCAAAGGAATGCATATGGAGTTTTGTGAAAAATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCAGTACTCAAAGGAATGCATATGGAGTTTTGTGAAAAATAC  50

seq1  CAAACATACCTTAGACCCTAGCAAAAGGCAGAGAAGAAACATTTCTAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATACCTTAGACCCTAGCAAAAGGCAGAGAAGAAACATTTCTAGAA  100

seq1  GATGGTTGAGCTCCTACAGAACTCCTATAAAAGGAACCAGGGCCATAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTGAGCTCCTACAGAACTCCTATAAAAGGAACCAGGGCCATAATA  150

seq1  TGTGACATTGATGTAACAGTGGAGGAATTGGATCATTGTTTGTAAAGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACATTGATGTAACAGTGGAGGAATTGGATCATTGTTTGTAAAGGTC  200

seq1  TTGCACTCAAGATAGGGGTTAAGCTAAACTAGAACGCATGGCTCATGTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTCAAGATAGGGGTTAAGCTAAACTAGAACGCATGGCTCATGTGC  250

seq1  TCAACCCCAGGAATTTGAGCTATATCCTATAATCAATATCATAGCAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCCCAGGAATTTGAGCTATATCCTATAATCAATATCATAGCAGGAA  300

seq1  AAAGAAATGCATTGCTATCATCTGATGTCCAGGTGTCTTAACAAGCTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATGCATTGCTATCATCTGATGTCCAGGTGTCTTAACAAGCTTAA  350

seq1  TCTCCGCAGGATCTTTTAGTATCTCACATTTGAGTAATCTTCTGAGCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCGCAGGATCTTTTAGTATCTCACATTTGAGTAATCTTCTGAGCATT  400

seq1  CTCTTGGGTCTTGGCAAGCACTACTAATCTAATGAAATGATGGCTTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGGTCTTGGCAAGCACTACTAATCTAATGAAATGATGGCTTTTGA  450

seq1  GGCTAAGGTTCCACATTAAAACACAGGTCTTGCATTCAACATTTTTGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAGGTTCCACATTAAAACACAGGTCTTGCATTCAACATTTTTGTGA  500

seq1  -TTTAAGATTCATTTTTTTCTGAGGATGTCTCC-CTTAATTGGATCACCA  548
       |||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTTAAGATTCATTTTTTTCTGAGGATGTCTCCTCTTAATTGGATCACCA  550

seq1  ATATACTGTTAATTTGTCTATATT  572
      ||||||||||||||||||||||||
seq2  ATATACTGTTAATTTGTCTATATT  574