BAC Information

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BAC

Clone NameB6Ng01-141D07
Chromosome1 (Build37)11 (Build37)
Map Location 130,535,368 - 130,535,67040,519,980 - 40,520,925
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTmem163, Acmsd, Ccnt2, Ysk4, Rab3gap1, Zranb3, LOC666778, LOC100042670, EG666784, R3hdm1, LOC667109, LOC100042111, Ubxd2, Lct, Mcm6, Dars, LOC620659, Cxcr4
Downstream geneLOC100042732, Thsd7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141D07.bB6Ng01-141D07.g
ACCDH939720DH939721
length378941
definitionDH939720|Mus musculus domesticus DNA, BAC clone: B6Ng01-141D07, 5' end.DH939721|Mus musculus domesticus DNA, BAC clone: B6Ng01-141D07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(130,535,368 - 130,535,670)(40,519,980 - 40,520,925)
sequence
accataacaacagaaacaggagatggcttcatgcttagtatgtttctttg
aaggcatgagcagtagatacccaaaacccacataaatactgggcaggctt
gatgttgcctctgcaagtccagccttggaagtcagaggcaggaatcacta
gaacaagttgtccagtgagatggccaaaagttcatgatttaattgagaga
gactgtctcaaagaacactgtggagcagtagtaaagggtagttcccaaca
tcaaccttgggtctacacatgcatacatattgatgtataagcacacatac
gtgcccacagacacacatgagagagagggagagagagagagagagagaga
gagagagagagagagagagagagagaga
gaattcaacgacaaatggagctccgcagagcactctaggccagcctagaa
tctcaagggaaaagatagtcaggcatagaggctgatattcttaatgctag
aacttgggggggagaaggggagtagatcccaggcttggcacagtgagcac
caggccagcttgggttatagagcaataccttatcttaaaaccaaaggaca
aaacacaacacaaaagatcgctacagtaacttgagaactactgggatgga
tcatatcatatggaaaaacacatcacagggtaacatactgcctgatgttc
ctaccaggagagccttcaaggactattgattagaaagcatttcttatatt
ttaacaactacattaaaatttagtgtctgctaaatgtgtcagttggctgg
aaaaatgatagtaatacaaaatgccatttttatcactttagtttggtttt
gtgtagtactgggaattgaaccctggcccttgtacatgccgagcagactc
taccgctgaggtcattaccagataaaacttgaagactattgtaaccatga
agacatactgcagaagcaccaagccatggtcaagggaggaaatacattct
taaaacagatcaaaataagtttatttatctatttttattttatttaattt
tattttatgagtatgggtgttgtactacatgtatgtctgtgcaacacggt
gcccagaaagcctgaagaagttgttggatagcccgaaactggagttacag
ccagtttggaaccaccatctgagtactgggaattgaacgtgggacctctg
caagagtaggtactatcttaaccacagagtcatctccagcctacaagtag
gcttaataacaagcaacaaacctggaaaggttagttttttctatagttct
tatataggaaacgccatttataatttccatggtaattctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_130535368_130535670
seq2: B6Ng01-141D07.b_317_430 (reverse)

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  50

seq1  CCTTCCCCGTGTCCCTTCCTTTCTCCCTCCCTCCCTCCTCCCTCCCT---  97
      |||                           ||| ||| |   |  ||   
seq2  CCT---------------------------CTCTCTCATGTGTGTCTGTG  73

seq1  --TACTAATTTGACTCTTCTGGACTGCCAGCAAGTCCAAGAATGCATCTA  145
         ||  || ||   ||| |       || |||    | | |||||| | 
seq2  GGCACGTATGTG-TGCTTAT------ACATCAA---TATGTATGCATGTG  113

seq1  TCTCTTCCTTTCCAGTACTGAGATTACAAACATGCATCACAATGTTTTCT  195
      |                                                 
seq2  T-------------------------------------------------  114

seq1  CTCTCTCTCTCCTCTTTTCTGTATGTGTGTGTGTGTGTGTGAGTGTTTGT  245
                                                        
seq2  --------------------------------------------------  114

seq1  ATGAGAGTGTGTGTGTATATGTGTATATGTGTGTGAGTGTTTGTGTGTAT  295
                                                        
seq2  --------------------------------------------------  114

seq1  GCATGTGT  303
              
seq2  --------  114

seq1: chr11_40519980_40520925
seq2: B6Ng01-141D07.g_68_1007

seq1  GAATTCAACGACAAATGGAGCTCCGCAGAGCACTCTAGGCCAGCCTAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACGACAAATGGAGCTCCGCAGAGCACTCTAGGCCAGCCTAGAA  50

seq1  TCTCAAGGGAAAAGATAGTCAGGCATAGAGGCTGATATTCTTAATGCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGGGAAAAGATAGTCAGGCATAGAGGCTGATATTCTTAATGCTAG  100

seq1  AACTTGGGGGGGAGAAGGGGAGTAGATCCCAGGCTTGGCACAGTGAGCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGGGGGGAGAAGGGGAGTAGATCCCAGGCTTGGCACAGTGAGCAC  150

seq1  CAGGCCAGCTTGGGTTATAGAGCAATACCTTATCTTAAAACCAAAGGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCAGCTTGGGTTATAGAGCAATACCTTATCTTAAAACCAAAGGACA  200

seq1  AAACACAACACAAAAGATCGCTACAGTAACTTGAGAACTACTGGGATGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAACACAAAAGATCGCTACAGTAACTTGAGAACTACTGGGATGGA  250

seq1  TCATATCATATGGAAAAACACATCACAGGGTAACATACTGCCTGATGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATCATATGGAAAAACACATCACAGGGTAACATACTGCCTGATGTTC  300

seq1  CTACCAGGAGAGCCTTCAAGGACTATTGATTAGAAAGCATTTCTTATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAGGAGAGCCTTCAAGGACTATTGATTAGAAAGCATTTCTTATATT  350

seq1  TTAACAACTACATTAAAATTTAGTGTCTGCTAAATGTGTCAGTTGGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAACTACATTAAAATTTAGTGTCTGCTAAATGTGTCAGTTGGCTGG  400

seq1  AAAAATGATAGTAATACAAAATGCCATTTTTATCACTTTAGTTTGGTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGATAGTAATACAAAATGCCATTTTTATCACTTTAGTTTGGTTTT  450

seq1  GTGTAGTACTGGGAATTGAACCCTGGCCCTTGTACATGCCGAGCAGACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGTACTGGGAATTGAACCCTGGCCCTTGTACATGCCGAGCAGACTC  500

seq1  TACCGCTGAGGTCATTACCAGATAAAACTTGAAGACTATTGTAACCATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCGCTGAGGTCATTACCAGATAAAACTTGAAGACTATTGTAACCATGA  550

seq1  AGACATACTGCAGAAGCACCAAGCCATGGTCAAGGGAGGAAATACATTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATACTGCAGAAGCACCAAGCCATGGTCAAGGGAGGAAATACATTCT  600

seq1  TAAAACAGATCAAAATAAGTTTATTTATCTATTTTTATTTTATTTAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAGATCAAAATAAGTTTATTTATCTATTTTTATTTTATTTAATTT  650

seq1  TATTTTATGAGTATGGGTGTTGTACTACATGTATGTCTGTGCAACACGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATGAGTATGGGTGTTGTACTACATGTATGTCTGTGCAACACGGT  700

seq1  GCCCAGAAAGCCTGAAGAAGTTGTTGGATAGCCCGAAACTGGAGTTACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGAAAGCCTGAAGAAGTTGTTGGATAGCCCGAAACTGGAGTTACAG  750

seq1  CCAGTTTGGAACCACCATCTGAGTACTGGGAATTGAACGTGGGACCTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTGGAACCACCATCTGAGTACTGGGAATTGAACGTGGGACCTCTG  800

seq1  CAAGAGTAGGTACTATCTTAACCACAGAGTCATCTTCCAGCCTACAAGTA  850
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAAGAGTAGGTACTATCTTAACCACAGAGTCATC-TCCAGCCTACAAGTA  849

seq1  GGCTTAATAACAAGCAACAAACCTGAAAAGGTTTAGTTTTTTCATATAGT  900
      ||||||||||||||||||||||||| ||||| ||||||||||| ||||||
seq2  GGCTTAATAACAAGCAACAAACCTGGAAAGG-TTAGTTTTTTC-TATAGT  897

seq1  TCTTCATATAGGAGACGCCATTTATTAATTTCCATGGTTAATTCTG  946
      |||| |||||||| |||||||||| |||||||||||| ||||||||
seq2  TCTT-ATATAGGAAACGCCATTTA-TAATTTCCATGG-TAATTCTG  940