BAC Information

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BAC

Clone NameB6Ng01-141I01
Chromosome1 (Build37)
Map Location 129,995,920 - 130,136,753
singlet/doubletdoublet
Overlap geneZranb3, R3hdm1, LOC667109, LOC100042111
Upstream geneMgat5, LOC667090, Tmem163, Acmsd, Ccnt2, Ysk4, Rab3gap1, LOC666778, LOC100042670, EG666784
Downstream geneUbxd2, Lct, Mcm6, Dars, LOC620659, Cxcr4, LOC100042732
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141I01.bB6Ng01-141I01.g
ACCDH939946DH939947
length1,091963
definitionDH939946|Mus musculus domesticus DNA, BAC clone: B6Ng01-141I01, 5' end.DH939947|Mus musculus domesticus DNA, BAC clone: B6Ng01-141I01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(130,135,672 - 130,136,753)(129,995,920 - 129,996,878)
sequence
gaattcagatattatatgatccaattcaagtatgttttatagtataggat
aaactgacctctattgttctagccacgacacatgcctagttttgttttat
ctcttcgagagtctcagaggatatctttaattctggatccttgtgtccac
cttctgagtgctggaattatagatgtgtgtactgtgatgaccatatttta
tgtttaatttcttcaaacttcgtgaatataggaatatagcttagctatat
atcaatggattatttttaaaattatatttatctcttcatgtgtgtatgta
tgtactgcaatatgggtagcatgcctgccatggtattcatgtggaggcca
gaggaagtttgttctgtgacatttctgagttgtgaagccattagtcaggg
gtggtggtaggtgtctttaactgatgaattatcttgctggtccagaatta
ttattctattatttttgggacagtcttatttgtagaccaggctgaccacc
atcatgcctgtctcctgagagctgaggcccgagccactatgcttgacttg
aattgagtctcaagtgaaatgtatatacagaggttaggagtttctacctg
ttcttttgccttgtgacacctgtatttcagtcttctcaagtctatggtgg
ctttacttggtgacaacactttaatctcttttcaaaaagcattatgagca
accccccccccccttgactataaaaatagacttgatccaagccagaccag
caacaaattccagggtctcatatagcctaggctgtctccccaactttgcc
aaagataaccttctgattcttctgcttccaccattcaatgctgagattat
atgtgtatgccatcacacctggcttatgtagtgctgggggatcaaaccta
gggctttccaaatgttagacaggcattgtgctgagatactcctcaacctg
gaggacatgtgtgtgtgttgcccgtgtgttgctgcgtgcgtgcgtgtctg
cgtgtatacaggtcagaaggcaacttgcagagatctatttagtcataggc
cacaagttatccacatggggtctctgaaaatggagactcct
gaattcatttataaaatgtgatacttaagtgccagggactcagcattgag
aaggaaatccttgcacagcctacatgaatgaactctggagatattaagtt
aaataagctagttataaaatgtcaaacgctgcaggagtctgttcctttac
atgagatagaagataagctcttggaaacagaaagcagaatggtgcttgca
aggagtcaggcagagtgaaaacagaattttttgctatgtaagaaagacct
ttcacagctgtattgtacaccaaggtataaaaggttaatgcactgtaaag
tccacacttaatgcttaaaatggtagattttgttatatactttcattaca
gtaacaaaaaaatattactgattggcaactgtaaataaccattagcaaga
aataggttatatttgagctacatcatggaatacaggcatcataaacaatg
acagtaatattgtcataattaacccactgtgctttaaataaagcagtagc
atgccatcctaacaggtcactctgtacccaggatacaatccacacaacta
caggtcattctgtaaaggggaacaattgggaggtgggggaggaacaggac
tgagggccagcagaaagaatcaaaacaggcaatcttgggagttggaggta
gggggaccctctagaatgtaccagagatccaggaggtgagactctctcag
gactcaaagggaggggaccttggatgaaatgccctacagtgggagaggaa
tttgtagaatccacctccagtggaagcatggggttgccatcccacagtca
aatactctgacccataattgtttctatttggaaaaaacttgcctggacta
aaatggagaacatcctgaggaaaaagaggtccagctaaggcctaaagtgg
gatccagtctcaaggggatgcctccaagatcttgaccataactgaggcta
tggaattttctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_130135672_130136753
seq2: B6Ng01-141I01.b_49_1139 (reverse)

seq1  AGGAG-CTCCATTTCTAG-GA-CCCATGTGGTGAACTTGTGGCCTATGAC  47
      ||||| ||||||||  || || |||||||||  |||||||||||||||||
seq2  AGGAGTCTCCATTTTCAGAGACCCCATGTGGATAACTTGTGGCCTATGAC  50

seq1  TAAAT-GATTCCTGCAAGTTGCCTTCTGACCTGTATACACGCACGCACGC  96
      ||||| |||  ||||||||||||||||||||||||||||||||  |||||
seq2  TAAATAGATCTCTGCAAGTTGCCTTCTGACCTGTATACACGCAGACACGC  100

seq1  ACGCACGCACGCACACACGCGC-ACACACACACATGTCCTCCAGGTTGAG  145
      |||||||||   ||||||| || |||||||||||||||||||||||||||
seq2  ACGCACGCAGCAACACACGGGCAACACACACACATGTCCTCCAGGTTGAG  150

seq1  GAGTATCTCAGCACAATGCTTGTCTAACATTTGGAAAGCCCTAGGTTTGA  195
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAGTATCTCAGCACAATGCCTGTCTAACATTTGGAAAGCCCTAGGTTTGA  200

seq1  T-CCCCAGCACTACATAAGCCAGGTGTGATGGCATACACATATAATCTCA  244
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCAGCACTACATAAGCCAGGTGTGATGGCATACACATATAATCTCA  250

seq1  GCATTGAATGGTGGAAGCAGAAGAATCAGAAGGTTATCTTTGGC-AAGTT  293
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GCATTGAATGGTGGAAGCAGAAGAATCAGAAGGTTATCTTTGGCAAAGTT  300

seq1  -GGGAGACAGCCTAGGCTATATGAGACCCTGGAA-TTGTTGCTGGTCTGG  341
       ||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGGGAGACAGCCTAGGCTATATGAGACCCTGGAATTTGTTGCTGGTCTGG  350

seq1  CTTGGATCAAGTCTATTTTTATAGTCAAGGGGGGGGGGGGTTGCTCATAA  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGATCAAGTCTATTTTTATAGTCAAGGGGGGGGGGGGTTGCTCATAA  400

seq1  TGCTTTTTGAAAAGAGATTAAAGTGTTGTCACCAAGTAAAGCCACCATAG  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTTTGAAAAGAGATTAAAGTGTTGTCACCAAGTAAAGCCACCATAG  450

seq1  ACTTGAGAAGACTGAAATACAGGTGTCACAAGGCAAAAGAACAGGTAGAA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGAAGACTGAAATACAGGTGTCACAAGGCAAAAGAACAGGTAGAA  500

seq1  ACTCCTAACCTCTGTATATACATTTCACTTGAGACTCAATTCAAGTCAAG  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTAACCTCTGTATATACATTTCACTTGAGACTCAATTCAAGTCAAG  550

seq1  CATAGTGGCTCGGGCCTCAGCTCTCAGGAGACAGGCATGATGGTGGTCAG  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGGCTCGGGCCTCAGCTCTCAGGAGACAGGCATGATGGTGGTCAG  600

seq1  CCTGGTCTACAAATAAGACTGTCCCAAAAATAATAGAATAATAATTCTGG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCTACAAATAAGACTGTCCCAAAAATAATAGAATAATAATTCTGG  650

seq1  ACCAGCAAGATAATTCATCAGTTAAAGACACCTACCACCACCCCTGACTA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCAAGATAATTCATCAGTTAAAGACACCTACCACCACCCCTGACTA  700

seq1  ATGGCTTCACAACTCAGAAATGTCACAGAACAAACTTCCTCTGGCCTCCA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTCACAACTCAGAAATGTCACAGAACAAACTTCCTCTGGCCTCCA  750

seq1  CATGAATACCATGGCAGGCATGCTACCCATATTGCAGTACATACATACAC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATACCATGGCAGGCATGCTACCCATATTGCAGTACATACATACAC  800

seq1  ACATGAAGAGATAAATATAATTTTAAAAATAATCCATTGATATATAGCTA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAGAGATAAATATAATTTTAAAAATAATCCATTGATATATAGCTA  850

seq1  AGCTATATTCCTATATTCACGAAGTTTGAAGAAATTAAACATAAAATATG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATATTCCTATATTCACGAAGTTTGAAGAAATTAAACATAAAATATG  900

seq1  GTCATCACAGTACACACATCTATAATTCCAGCACTCAGAAGGTGGACACA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCACAGTACACACATCTATAATTCCAGCACTCAGAAGGTGGACACA  950

seq1  AGGATCCAGAATTAAAGATATCCTCTGAGACTCTCGAAGAGATAAAACAA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCCAGAATTAAAGATATCCTCTGAGACTCTCGAAGAGATAAAACAA  1000

seq1  AACTAGGCATGTGTCGTGGCTAGAACAATAGAGGTCAGTTTATCCTATAC  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGCATGTGTCGTGGCTAGAACAATAGAGGTCAGTTTATCCTATAC  1050

seq1  TATAAAACATACTTGAATTGGATCATATAATATCTGAATTC  1082
      |||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAACATACTTGAATTGGATCATATAATATCTGAATTC  1091

seq1: chr1_129995920_129996878
seq2: B6Ng01-141I01.g_70_1032

seq1  GAATTCATTTATAAAATGTGATACTTAAGTGCCAGGGACTCAGCATTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTATAAAATGTGATACTTAAGTGCCAGGGACTCAGCATTGAG  50

seq1  AAGGAAATCCTTGCACAGCCTACATGAATGAACTCTGGAGATATTAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAATCCTTGCACAGCCTACATGAATGAACTCTGGAGATATTAAGTT  100

seq1  AAATAAGCTAGTTATAAAATGTCAAACGCTGCAGGAGTCTGTTCCTTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGCTAGTTATAAAATGTCAAACGCTGCAGGAGTCTGTTCCTTTAC  150

seq1  ATGAGATAGAAGATAAGCTCTTGGAAACAGAAAGCAGAATGGTGCTTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATAGAAGATAAGCTCTTGGAAACAGAAAGCAGAATGGTGCTTGCA  200

seq1  AGGAGTCAGGCAGAGTGAAAACAGAATTTTTTGCTATGTAAGAAAGACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTCAGGCAGAGTGAAAACAGAATTTTTTGCTATGTAAGAAAGACCT  250

seq1  TTCACAGCTGTATTGTACACCAAGGTATAAAAGGTTAATGCACTGTAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGCTGTATTGTACACCAAGGTATAAAAGGTTAATGCACTGTAAAG  300

seq1  TCCACACTTAATGCTTAAAATGGTAGATTTTGTTATATACTTTCATTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACTTAATGCTTAAAATGGTAGATTTTGTTATATACTTTCATTACA  350

seq1  GTAACAAAAAAATATTACTGATTGGCAACTGTAAATAACCATTAGCAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAAAAAAATATTACTGATTGGCAACTGTAAATAACCATTAGCAAGA  400

seq1  AATAGGTTATATTTGAGCTACATCATGGAATACAGGCATCATAAACAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTTATATTTGAGCTACATCATGGAATACAGGCATCATAAACAATG  450

seq1  ACAGTAATATTGTCATAATTAACCCACTGTGCTTTAAATAAAGCAGTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTAATATTGTCATAATTAACCCACTGTGCTTTAAATAAAGCAGTAGC  500

seq1  ATGCCATCCTAACAGGTCACTCTGTACCCAGGATACAATCCACACAACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATCCTAACAGGTCACTCTGTACCCAGGATACAATCCACACAACTA  550

seq1  CAGGTCATTCTGTAAAGGGGAACAATTGGGAGGTGGGGGAGGAACAGGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCATTCTGTAAAGGGGAACAATTGGGAGGTGGGGGAGGAACAGGAC  600

seq1  TGAGGGCCAGCAGAAAGAATCAAAACAGGCAATCTTGGGAGTTGGAGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGCCAGCAGAAAGAATCAAAACAGGCAATCTTGGGAGTTGGAGGTA  650

seq1  GGGGGACCCTCTAGAATGTACCAGAGATCCAGGAGGTGAGACTCTCTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGACCCTCTAGAATGTACCAGAGATCCAGGAGGTGAGACTCTCTCAG  700

seq1  GACTCAAAGGGA-GGGACCTTGGATGAAATGCCCTACAGTGGGGAGAGGA  749
      |||||||||||| ||||||||||||||||||||||||||| |||||||||
seq2  GACTCAAAGGGAGGGGACCTTGGATGAAATGCCCTACAGT-GGGAGAGGA  749

seq1  ACTTGTAGAATCCACCTCCAGTGGAAGCATGGGGTTGCCATCCCACAGTC  799
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAGAATCCACCTCCAGTGGAAGCATGGGGTTGCCATCCCACAGTC  799

seq1  AAATACTCTGACCCATAATTGTTCCTATCTGGAAAAAAC-TGCCTGGACT  848
      ||||||||||||||||||||||| |||| |||||||||| ||||||||||
seq2  AAATACTCTGACCCATAATTGTTTCTATTTGGAAAAAACTTGCCTGGACT  849

seq1  AAAATGGAGAACAGCCTGAGGAAAAAGAGGTCCAGCTACAGGCCTAAAGT  898
      ||||||||||||| |||||||||||||||||||||||| |||||||||||
seq2  AAAATGGAGAACATCCTGAGGAAAAAGAGGTCCAGCTA-AGGCCTAAAGT  898

seq1  GGGATCCAG-CTCAAGGGGAGGCC-CCAAGA-CCTGACACATTACTGAGG  945
      ||||||||| |||||||||| ||| |||||| | |||| ||| |||||||
seq2  GGGATCCAGTCTCAAGGGGATGCCTCCAAGATCTTGAC-CATAACTGAGG  947

seq1  CTATGGA--GTTCTCA  959
      |||||||   ||||||
seq2  CTATGGAATTTTCTCA  963