BAC Information

Click to search

BAC

Clone NameB6Ng01-141N21
ChromosomeX (Build37)1 (Build37)
Map Location 140,555,279 - 140,555,79672,785,484 - 72,786,570
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC209541, Chrdl1, Pak3, Capn6, Dcx
Downstream geneLOC666628, LOC666633, LOC100039378, LOC100039243, Alg13, LOC100039407, Trpc5, LOC100039436, Zcchc16, LOC666655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-141N21.bB6Ng01-141N21.g
ACCDH940212DH940213
length1,0361,088
definitionDH940212|Mus musculus domesticus DNA, BAC clone: B6Ng01-141N21, 5' end.DH940213|Mus musculus domesticus DNA, BAC clone: B6Ng01-141N21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(140,555,279 - 140,555,796)(72,785,484 - 72,786,570)
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacaccataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgatttcgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttatttccagac
aaatttgcaaattgctccttccaattcgttgaagaattgagttggaattt
tgatggggattgcattgaatctgtagattgctttggcaagatagccattt
ttacaatgttgatcctgcccattcatgagcatggagatctttccatcttc
tgagatccttcttatttctttcttagagatttgaagtttatcatacagat
ctttcacttcctagtagagtcacgccagatatttatattattgtgactat
tgagaaggtgtggttcctaatttcttctcagcctgtttattctttggata
gagaaaggccatgacttgttgagtttattttatatc
gaattcctctccctccttagcgtgggccctcgtgttggcatgccaacagc
cccaaatatttaaagcaatcatgaaaatgagctcagactcccatgccaga
gccttgaaaggaattaggctaaaaacgggacaaaggaagaggtgaggcca
aacggaaaacgccatgaaaggcagtgcccggcatggctggggcccaggac
tctcctcactgactccattcatttgtagccaggcactgtgctgggccctg
caaaggcaaagttgaatgaatcactatcccagcacttgacgagctcccta
tctagccagggacgccaccgacaaccacgccgctgtgcgctaagcgtgga
caagaagccatccgaagcacaaaggaagatcacagtgaagcatctccctg
gtctaacttatggcaagtgtgccccgctaggaacaaaggatgtgctgctg
agaggcagaagatccctggcaggggtgaaggtaccagagaggcacaaggc
agcttgggaggaggagagtggccctgcgtgagtgctcggggaaactgcta
agacccggcctctccataggcagccttatgcacactgaacacacagaaca
gaacatggagtgagactcagcttatggtctcttaaaaacgctgacagaga
tggatacttggagttagaagcaaggttttgaagcagaaagtcctttctca
gaagatggcctctgtgcaagcaagaagggagtgcgtcagaacagtcatct
tcctacaggcctccaggcagcatctcttgctggaaggggtggtgggtttt
tctatgtcacaggagtgaaggaagaagtgtacttggcaggctggctgact
tgggcagcatctaggttactctaagcagaatgtcctgggggaaggtgtcc
agggtcataggcagatgtctgaaagtttgtgagtaaggaagcctcgggca
tctgcttacttagagatgaaaggagacaggaggtcttgcttggttctgca
aacactcaccgtccttagacagtgtggcttatgactttggtttgattggg
tgtctggcagccccaggagacaaggagcaaagaaagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_140555279_140555796
seq2: B6Ng01-141N21.b_583_1084 (reverse)

seq1  GATATAAAATAAACTCAAACAAGTCAATGGCCTTTCTCTATACAAAGAAT  50
      |||||||||||||||| |||||||| ||||||||||||||| ||||||||
seq2  GATATAAAATAAACTC-AACAAGTC-ATGGCCTTTCTCTATCCAAAGAAT  48

seq1  AAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCAC  100
      |||||||||||| |||||||||||  ||| ||| ||||||||||||||||
seq2  AAACAGGCTGAG-AAGAAATTAGG--AACCACA-CCTTCTCAATAGTCAC  94

seq1  AAATAATATAAAATATCTTGGCGTGACTCTAACTAAGGAGGTGAAAGATC  150
       |||||||| ||||||| |||||||||||| ||| |||| ||||||||||
seq2  -AATAATAT-AAATATC-TGGCGTGACTCT-ACT-AGGAAGTGAAAGATC  139

seq1  TGTATGATAAAAACTTCAAATCTCTGAAGAAAGAAATTAAAGAA-GATCT  199
      ||||||||  ||||||||||||||| |||||||||||  ||||| |||||
seq2  TGTATGAT--AAACTTCAAATCTCT-AAGAAAGAAAT--AAGAAGGATCT  184

seq1  CAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTG  249
      |||||||||||||||||| ||||||||||| || ||||||||||||||||
seq2  CAGAAGATGGAAAGATCT-CCATGCTCATGAATGGGCAGGATCAACATTG  233

seq1  TAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCC  299
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TAAAAATGGCTATCTTGCC-AAAGCAATCTACAGATTCAATGCAATCCCC  282

seq1  ATCAAAATTCCAACTCAATTCTTCAACGAATTGGAAGGAGCAATTTGCAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAATTCCAACTCAATTCTTCAACGAATTGGAAGGAGCAATTTGCAA  332

seq1  ATTTGTCTGG-AATAACAAAAAACCTAGGATAGCAAAAAGTCTTCTCAAG  398
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCTGGAAATAACAAAAAACCTAGGATAGCAAAAAGTCTTCTCAAG  382

seq1  GATAAAAGAACTTCTGGCGGAATCACCATGCCAGACCTAAAGCTTTACTA  448
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GATAAAAGAACTTCTGGCGAAATCACCATGCCAGACCTAAAGCTTTACTA  432

seq1  CAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGAGACAGACAAG  482

seq1  TAGACCAATGGAATAGAATT  518
      ||||||||||||||||||||
seq2  TAGACCAATGGAATAGAATT  502

seq1: chr1_72785484_72786570
seq2: B6Ng01-141N21.g_68_1155 (reverse)

seq1  TGCTTTCTTTCTGCTCCCTCGTCTTCCTGTGGCTGCCCAGCACCCCAGAT  50
      |||||||||  |||| ||| ||| ||||| |||||||   |||||   ||
seq2  TGCTTTCTT--TGCT-CCTTGTC-TCCTGGGGCTGCCAGACACCC--AAT  44

seq1  CAGACCAAAGTCAT-AGCCACACTGTCCTAAGGACGGTGATGTGCTCTGG  99
      || ||||||||||| ||||||||||| ||||||||||||| |||   | |
seq2  CAAACCAAAGTCATAAGCCACACTGT-CTAAGGACGGTGA-GTG--TTTG  90

seq1  CAGAACCAGGCAAAAGACCTTCCTGTCTCC-TTCATCTCTAGGTAAGCAG  148
      |||||||| ||  |||||| |||||||||| |||||||||| ||||||||
seq2  CAGAACCAAGC--AAGACC-TCCTGTCTCCTTTCATCTCTAAGTAAGCAG  137

seq1  GTGCCCGAGGCTCCCTTACTCAC-AACTCTCAGGCATCTGCCTTTGACCT  197
       ||||||||||| |||||||||| |||| |||| ||||||||| ||||| 
seq2  ATGCCCGAGGCTTCCTTACTCACAAACTTTCAGACATCTGCCTATGACCC  187

seq1  TGG-CACCTT-CCCCAGG-CATTCTGCT--GGGTACCTGGGATGCTG-CC  241
      ||| |||||| ||||||| |||||||||  | ||| |   ||||||| ||
seq2  TGGACACCTTCCCCCAGGACATTCTGCTTAGAGTAACCTAGATGCTGCCC  237

seq1  AAGTCAGCCAGCCTGCCAAGTACAC-TCTTCCTTCACTCCTGTGACATAG  290
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAGTCAGCCAGCCTGCCAAGTACACTTCTTCCTTCACTCCTGTGACATAG  287

seq1  -AAAACCCA-CGTCCCTTCCAGC-AGGGATGCTGCCTGGAGGCCTGTAGG  337
       |||||||| |  |||||||||| || |||||||||||||||||||||||
seq2  AAAAACCCACCACCCCTTCCAGCAAGAGATGCTGCCTGGAGGCCTGTAGG  337

seq1  GAGGTGACTGTTCTGACGCACTCCCTTCTTGCTTGCACAGGGGCCATCTT  387
       || |||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAGATGACTGTTCTGACGCACTCCCTTCTTGCTTGCACAGAGGCCATCTT  387

seq1  CTGAGAAAGG-CTTTCTGCTTCAAAACCTTGCTTCTAACTCCAAGTATCC  436
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAAGGACTTTCTGCTTCAAAACCTTGCTTCTAACTCCAAGTATCC  437

seq1  ATCTCTGTCAGCGTTTTTAAGAGACCATAAGCTGAGTCTCACTCCATGTT  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTGTCAGCGTTTTTAAGAGACCATAAGCTGAGTCTCACTCCATGTT  487

seq1  CTGTTCTGTGTGTTCAGTGTGCATAAGGCTGCCTATGGAGAGGCCGGGTC  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTGTGTGTTCAGTGTGCATAAGGCTGCCTATGGAGAGGCCGGGTC  537

seq1  TTAGCAGTTTCCCCGAGCACTCACGCAGGGCCACTCTCCTCCTCCCAAGC  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCAGTTTCCCCGAGCACTCACGCAGGGCCACTCTCCTCCTCCCAAGC  587

seq1  TGCCTTGTGCCTCTCTGGTACCTTCACCCCTGCCAGGGATCTTCTGCCTC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGTGCCTCTCTGGTACCTTCACCCCTGCCAGGGATCTTCTGCCTC  637

seq1  TCAGCAGCACATCCTTTGTTCCTAGCGGGGCACACTTGCCATAAGTTAGA  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAGCACATCCTTTGTTCCTAGCGGGGCACACTTGCCATAAGTTAGA  687

seq1  CCAGGGAGATGCTTCACTGTGATCTTCCTTTGTGCTTCGGATGGCTTCTT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAGATGCTTCACTGTGATCTTCCTTTGTGCTTCGGATGGCTTCTT  737

seq1  GTCCACGCTTAGCGCACAGCGGCGTGGTTGTCGGTGGCGTCCCTGGCTAG  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACGCTTAGCGCACAGCGGCGTGGTTGTCGGTGGCGTCCCTGGCTAG  787

seq1  ATAGGGAGCTCGTCAAGTGCTGGGATAGTGATTCATTCAACTTTGCCTTT  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGGAGCTCGTCAAGTGCTGGGATAGTGATTCATTCAACTTTGCCTTT  837

seq1  GCAGGGCCCAGCACAGTGCCTGGCTACAAATGAATGGAGTCAGTGAGGAG  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCCCAGCACAGTGCCTGGCTACAAATGAATGGAGTCAGTGAGGAG  887

seq1  AGTCCTGGGCCCCAGCCATGCCGGGCACTGCCTTTCATGGCGTTTTCCGT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGGGCCCCAGCCATGCCGGGCACTGCCTTTCATGGCGTTTTCCGT  937

seq1  TTGGCCTCACCTCTTCCTTTGTCCCGTTTTTAGCCTAATTCCTTTCAAGG  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTCACCTCTTCCTTTGTCCCGTTTTTAGCCTAATTCCTTTCAAGG  987

seq1  CTCTGGCATGGGAGTCTGAGCTCATTTTCATGATTGCTTTAAATATTTGG  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCATGGGAGTCTGAGCTCATTTTCATGATTGCTTTAAATATTTGG  1037

seq1  GGCTGTTGGCATGCCAACACGAGGGCCCACGCTAAGGAGGGAGAGGAATT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTTGGCATGCCAACACGAGGGCCCACGCTAAGGAGGGAGAGGAATT  1087

seq1  C  1087
      |
seq2  C  1088