BAC Information

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BAC

Clone NameB6Ng01-142C02
Chromosome6 (Build37)1 (Build37)
Map Location 21,864,736 - 21,865,89253,704,269 - 53,704,401
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneKcnd2, LOC100041343, Tspan12, LOC100041358
Downstream geneIng3, A430107O13Rik, LOC667307, Wnt16, D6Wsu176e, LOC100040948, LOC100040959, LOC668018, LOC668022, Ptprz1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142C02.bB6Ng01-142C02.g
ACCDH940404DH940405
length1,1371,052
definitionDH940404|Mus musculus domesticus DNA, BAC clone: B6Ng01-142C02, 5' end.DH940405|Mus musculus domesticus DNA, BAC clone: B6Ng01-142C02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(21,864,736 - 21,865,892)(53,704,269 - 53,704,401)
sequence
gaattccagatttctaggagttcgcgaggtttctttttacttttcctgac
ctctaatattactgccctgaaatcagaatctatagtccacactttttcct
gtatctgttgaatatatgcaaccatggtaaattttagaaaatgcttaaag
ttcaaaggatgttaaataaaatgcccagctagaagttgtactgtactgtt
actgaggcttagacccttatttatttctctatttctattatgtcattttt
aggtgactatttgtatttttcagcagcacttttaatttaggagctggtgt
tttatttggggagttctttgggagatatatgttatagatataacccatat
tatgggtaaatagccagtatttttccttagtgccatttgtattcatcctc
ccctttcaaaattgcctcatagaatttacaaacagtatcccaagtcctgc
ttccccatctgattaacatccctttgcccttttgctttccagcctttctt
gagtcattttactttaaattgtctgctctatctgtttgcgcgttttttac
tgccaatctaatagaataatatattccatttcctctgggatatgacagct
gtattgagatatagttattatttcatatcgctttcttctcagtattgtca
ttgtttcctatgctttatcagaaaaaaatacctagggcacaagctaagac
agcataacattttcgaaaagttatttttcctccaagagcaatggttttga
caaccagtttttaacctatctttggttttctcatctaaatgaaggaggag
cttcctcacgacgtatctttcatgttgagtctccacagacacaaattcac
tggattctcagctccaggttttggtttggggtttttggataattccctat
caagcatcacatgtaagctaattccttccctcggaggcctcctagcaaac
tcgtgtgtgtgggaaagctaatttctctctcatccatttgctatgcttta
aagatgctccataccatttagagtagagagttcagcactgttgtgtcaca
gtgaggattatctcatctagaatgtttaaagaatttcttcatttgtgacc
ctccctctcattcctttgagttcagactgtaatcaag
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagataaaaaattcaggggacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactagcggaggatccagcaatacccctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gaatactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggataaccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaatgttgacaccattgcatacactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacaggctcccat
gaagagctagagaagtacccagagctaaagggatctgcaccctatagtga
cacattatgactacagtaccagagctctgactctagctgcatatgtatca
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_21864736_21865892
seq2: B6Ng01-142C02.b_43_1179 (reverse)

seq1  CTTGATTTTACAGGTCTGAAACTCAAAGGAATGAGAGGGAGGGTCCACTT  50
      |||||  ||||| ||||| ||||||||||||||||||||||||| |||  
seq2  CTTGA--TTACA-GTCTG-AACTCAAAGGAATGAGAGGGAGGGT-CAC--  43

seq1  AAATGAAGAAATTTTCTTTTAAACA-TCTAGAATGAGATAATTCCCTCAC  99
      |||||||||||||    |||||||| ||||| ||||||||||  ||||||
seq2  AAATGAAGAAATT---CTTTAAACATTCTAG-ATGAGATAAT--CCTCAC  87

seq1  TGTGAACACAACAGTGGCTGAACTCTCTACCTCCTAAATGGTATGGAGCA  149
      |||| |||||||||| ||||||||||||||   |||||||||||||||||
seq2  TGTG-ACACAACAGT-GCTGAACTCTCTAC--TCTAAATGGTATGGAGCA  133

seq1  TCTTTAAAGCATAGCAAATGGATGAGAGGAAGAAATTAGCCTTTCCCACA  199
      ||||||||||||||||||||||||||||  ||||||||| ||||||||||
seq2  TCTTTAAAGCATAGCAAATGGATGAGAG--AGAAATTAG-CTTTCCCACA  180

seq1  CACACGAGTTTGCTAGGAGGCCTCCCGAGGGAAGGAATTAGCTTACATGT  249
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CACACGAGTTTGCTAGGAGGCCT-CCGAGGGAAGGAATTAGCTTACATGT  229

seq1  GATGCTTGATAGGGAATTATCCAAAAACCCCAAACCAAAACCTGGAGCTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTGATAGGGAATTATCCAAAAACCCCAAACCAAAACCTGGAGCTG  279

seq1  AGAATCCAGTGAATTTGTGTCTGTGGAGACTCAACATGAAAGATACGTCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGAATCCAGTGAATTTGTGTCTGTGGAGACTCAACATGAAAGATACGTCG  329

seq1  TGAGGAAGCTCCTCCTTCATTTAGATGAGAAAACCAAAGATAGGTTAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAGCTCCTCCTTCATTTAGATGAGAAAACCAAAGATAGGTTAAAA  379

seq1  ACTGGTTGTCAAAACCATTGCTCTTGGAGGAAAAATAACTTTTCGAAAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTTGTCAAAACCATTGCTCTTGGAGGAAAAATAACTTTTCGAAAAT  429

seq1  GTTATGCTGTCTTAGCTTGTGCCCTAGGTATTTTTTTCTGATAAAGCATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGCTGTCTTAGCTTGTGCCCTAGGTATTTTTTTCTGATAAAGCATA  479

seq1  GGAAACAATGACAATACTGAGAAGAAAGCGATATGAAATAATAACTATAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACAATGACAATACTGAGAAGAAAGCGATATGAAATAATAACTATAT  529

seq1  CTCAATACAGCTGTCATATCCCAGAGGAAATGGAATATATTATTCTATTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATACAGCTGTCATATCCCAGAGGAAATGGAATATATTATTCTATTA  579

seq1  GATTGGCAGTAAAAAACGCGCAAACAGATAGAGCAGACAATTTAAAGTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGCAGTAAAAAACGCGCAAACAGATAGAGCAGACAATTTAAAGTAA  629

seq1  AATGACTCAAGAAAGGCTGGAAAGCAAAAGGGCAAAGGGATGTTAATCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTCAAGAAAGGCTGGAAAGCAAAAGGGCAAAGGGATGTTAATCAG  679

seq1  ATGGGGAAGCAGGACTTGGGATACTGTTTGTAAATTCTATGAGGCAATTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGAAGCAGGACTTGGGATACTGTTTGTAAATTCTATGAGGCAATTT  729

seq1  TGAAAGGGGAGGATGAATACAAATGGCACTAAGGAAAAATACTGGCTATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGGGAGGATGAATACAAATGGCACTAAGGAAAAATACTGGCTATT  779

seq1  TACCCATAATATGGGTTATATCTATAACATATATCTCCCAAAGAACTCCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATAATATGGGTTATATCTATAACATATATCTCCCAAAGAACTCCC  829

seq1  CAAATAAAACACCAGCTCCTAAATTAAAAGTGCTGCTGAAAAATACAAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAAACACCAGCTCCTAAATTAAAAGTGCTGCTGAAAAATACAAAT  879

seq1  AGTCACCTAAAAATGACATAATAGAAATAGAGAAATAAATAAGGGTCTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCTAAAAATGACATAATAGAAATAGAGAAATAAATAAGGGTCTAA  929

seq1  GCCTCAGTAACAGTACAGTACAACTTCTAGCTGGGCATTTTATTTAACAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGTAACAGTACAGTACAACTTCTAGCTGGGCATTTTATTTAACAT  979

seq1  CCTTTGAACTTTAAGCATTTTCTAAAATTTACCATGGTTGCATATATTCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAACTTTAAGCATTTTCTAAAATTTACCATGGTTGCATATATTCA  1029

seq1  ACAGATACAGGAAAAAGTGTGGACTATAGATTCTGATTTCAGGGCAGTAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATACAGGAAAAAGTGTGGACTATAGATTCTGATTTCAGGGCAGTAA  1079

seq1  TATTAGAGGTCAGGAAAAGTAAAAAGAAACCTCGCGAACTCCTAGAAATC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAGAGGTCAGGAAAAGTAAAAAGAAACCTCGCGAACTCCTAGAAATC  1129

seq1  TGGAATTC  1157
      ||||||||
seq2  TGGAATTC  1137

seq1: chr1_53704269_53704401
seq2: B6Ng01-142C02.g_1003_1118

seq1  TCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAG  50
      ||||| ||||||||   || ||||||||| |||||||||  |||||||||
seq2  TCACA-GGCTCCCA--TGAAGAGCTAGAG-AAGTACCCA--GAGCTAAAG  44

seq1  GGATCTGCAACCCTATAGGTGGAACAACATTATGAACTAGCCAGTACCCC  100
      |||||||| |||||||| |||  || |||||||| ||||  |||||  ||
seq2  GGATCTGC-ACCCTATA-GTG--AC-ACATTATG-ACTA--CAGTA--CC  84

seq1  GGAGCTCTGGACTCTAGCTGCATATGTATCAAA  133
       ||||||| ||||||||||||||||||||||||
seq2  AGAGCTCT-GACTCTAGCTGCATATGTATCAAA  116