BAC Information

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BAC

Clone NameB6Ng01-142F24
Chromosome1 (Build37)
Map Location 30,489,427 - 30,638,812
singlet/doubletdoublet
Overlap genenone
Upstream geneEG433283, LOC100040665, LOC665944
Downstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262, LOC624275
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142F24.bB6Ng01-142F24.g
ACCDH940588DH940589
length1,0571,041
definitionDH940588|Mus musculus domesticus DNA, BAC clone: B6Ng01-142F24, 5' end.DH940589|Mus musculus domesticus DNA, BAC clone: B6Ng01-142F24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,489,427 - 30,490,496)(30,637,771 - 30,638,812)
sequence
gaattcaactcccagcaatcacatggtgactcaaaacccatctgtaatag
gatctgattcccttttctgtctgtcatgcaggcatacatgcaaatagagc
actcataaaaataaataaatctaaaaaaaaaaaagaaaaagaaaagaaaa
ggcaaggcaaggcaagacaagacaagacaagacaagacaagacaagacaa
gacaagaagactggataactgcagaggtgagaaaagacaatgtagtcaat
gaccaggtgctatgaaagatatgaagctgattgcttttctagttctaaat
ctcatggaattttcatttttggtaggagataggttcataaaatatatttt
ataataaaaatacaaaatataacgtaactccagagcttctatttcaaatg
gctagtccaaatgtatcgaagttgattgagttgtacagtctttaggtctg
gttattttttttttttttggtatgtttgtatgtttctgtgtgtgatatgt
ttagcttgtaatttgtttttttatatatataataaagttttttttaaaaa
attaaaggtcaaaaatccaaaaagagctagtaatatggctcaggtataaa
tgtgcttgctatgaaacctaaagacctgaattcaatccttggaatgcaca
taatgagagaaaaatagctctcctctgagttcttttatgacctccacctg
tggagtgtgctagccaggttttatgtcaattttatacaagtgagtatttt
ggaagagaaaaccacagttgagaaaatgcccctgcaggattgggcctgtg
ggcaagcttgagcagacttttcttggttgatgattgacatggataagtcc
ttcccacagagagtagtatcagccctgggtgaatgggttctgggtggttt
aaaaaaagcaggctgaggaagcatggagagcaaacaagtaagcagccctc
ctcatgcctctgcatcagctcttgtgctgcgaattttttttgtctatttt
ttttaatcttaatcttttttggcattccaactttatccccccaggagtgc
cctgact
gaattcagatctcaggtcctctgacatggggtcagtggctttgtattaag
tcagacttaaagaaagcatcggctagtcattatttcataacccatggcca
aaacacctgataggctttgaagatttgccttgtggacatttaaaagtcat
gctcatgaatcaattagcatttctgctgatctggaaacaacttgacttga
gctaggcttcctttctccccttctcttcccccgtgggctcatcatggttg
agctgttttcagagacagcacttcttagatctcacattggtttaatattc
tgtgtgccttctgcagctaggctacccaagaccttctcaacattaattct
gatgcattatcagcctgtcagaagaaatgctagttgctgtagaatctcta
gcccatgaatctagaatctgtagacagaaacagaagccagaagaagaagc
tgattgtcttgtgttaaactcctctcctggcataggatgctatgtagtgg
tgggatagcttttcctaatcataaccattgaactttcctctgtgaaagta
atgagaaatctctgaattatgggagttataacattcttgaactattttac
tactgagattggtttctctaatctagactgaggtcatagtcatttcccta
acccgattttgtaaaatgaaacgacacaaaaccacgtattttcaatgaaa
cttcgttgtcataatcaagccatctgggcccctttgtttcctttttccca
acagaagaatggggcaataaaatcacagagattatggaggtcaactgtca
atgattatgtatgttatgctttgaaattttaaagagctaagaaattctgg
cctcataaaaatagtagttatatcgggaaaggtcttctatgatttataag
ctatggctttcttgtaagtatccactgaccacctctagctcagctttgat
ttatgagaaacaggatatctctagcttcatctgcttcatgtcagaaggac
atttgaacaaatgcagttattaataacctatagcgatcatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_30489427_30490496
seq2: B6Ng01-142F24.b_45_1101

seq1  GAATTCAACTCCCAGCAATCACATGGTGACTCAAAACCCATCTGTAATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTCCCAGCAATCACATGGTGACTCAAAACCCATCTGTAATAG  50

seq1  GATCTGATTCCCTTTTCTGTCTGTCATGCAGGCATACATGCAAATAGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGATTCCCTTTTCTGTCTGTCATGCAGGCATACATGCAAATAGAGC  100

seq1  ACTCATAAAAATAAATAAATCTAAAAAAAAAAAAGAAAAAGAAAAGAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATAAAAATAAATAAATCTAAAAAAAAAAAAGAAAAAGAAAAGAAAA  150

seq1  GGCAAGGCAAGGCAAGACAAGACAAGACAAGACAAGACAAGACAAGACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGGCAAGGCAAGACAAGACAAGACAAGACAAGACAAGACAAGACAA  200

seq1  GACAAGAAGACTGGATAACTGCAGAGGTGAGAAAAGACAATGTAGTCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGAAGACTGGATAACTGCAGAGGTGAGAAAAGACAATGTAGTCAAT  250

seq1  GACCAGGTGCTATGAAAGATATGAAGCTGATTGCTTTTCTAGTTCTAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGTGCTATGAAAGATATGAAGCTGATTGCTTTTCTAGTTCTAAAT  300

seq1  CTCATGGAATTTTCATTTTTGGTAGGAGATAGGTTCATAAAATATATTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGGAATTTTCATTTTTGGTAGGAGATAGGTTCATAAAATATATTTT  350

seq1  ATAATAAAAATACAAAATATAACGTAACTCCAGAGCTTCTATTTCAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAAAAATACAAAATATAACGTAACTCCAGAGCTTCTATTTCAAATG  400

seq1  GCTAGTCCAAATGTATCGAAGTTGATTGAGTTGTACAGTCTTTAGGTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTCCAAATGTATCGAAGTTGATTGAGTTGTACAGTCTTTAGGTCTG  450

seq1  GTTATTTTTTTTTTTTTTGGTATGTTTGTATGTTTCTGTGTGTGATATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTTTTTTTTTTTTGGTATGTTTGTATGTTTCTGTGTGTGATATGT  500

seq1  TTAGCTTGTAATTTGTTTTTTTATATATATAATAAAGTTTTTTTTAAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTGTAATTTGTTTTTTTATATATATAATAAAGTTTTTTTTAAAAA  550

seq1  ATTAAAGGTCAAAAATCCAAAAAGAGCTAGTAATATGGCTCAGGTATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGTCAAAAATCCAAAAAGAGCTAGTAATATGGCTCAGGTATAAA  600

seq1  TGTGCTTGCTATGAAACCTAAAGACCTGAATTCAATCCTTGGAATGCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTGCTATGAAACCTAAAGACCTGAATTCAATCCTTGGAATGCACA  650

seq1  TAATGAGAGAAAAATAGCTCTCCTCTGAGTTCTTTTATGACCTCCACCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGAGAAAAATAGCTCTCCTCTGAGTTCTTTTATGACCTCCACCTG  700

seq1  TGGAGTGTGCTAGCCAGGTTTTATGTCAATTTTATACAAGTGAGTATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGTGCTAGCCAGGTTTTATGTCAATTTTATACAAGTGAGTATTTT  750

seq1  GGAAGAGAAAACCACAGTTGAGAAAATGCCCCTGCAGGATT-GGCCTGTG  799
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGAAGAGAAAACCACAGTTGAGAAAATGCCCCTGCAGGATTGGGCCTGTG  800

seq1  GGCAAGCTTGAGCAAGAC-TTTCTTGGTTGATGATTGACATGGATAAGTC  848
      ||||||||||||| |||| |||||||||||||||||||||||||||||||
seq2  GGCAAGCTTGAGC-AGACTTTTCTTGGTTGATGATTGACATGGATAAGTC  849

seq1  CTTCCCACAGAGAGTAGTATCAGCCCTGGGTGAAT-GGTTCTGGGTGGTA  897
      ||||||||||||||||||||||||||||||||||| ||||||||||||| 
seq2  CTTCCCACAGAGAGTAGTATCAGCCCTGGGTGAATGGGTTCTGGGTGGTT  899

seq1  TAAAAAAAGCAGGCTGAGGAAGGCATGGAGAGCAAACCAGTAAGCAGCAC  947
      ||||||||||||||||||||| ||||||||||||||| |||||||||| |
seq2  TAAAAAAAGCAGGCTGAGGAA-GCATGGAGAGCAAACAAGTAAGCAGCCC  948

seq1  TCCTCCATGGCCTCTGCATCAGCTCTTGGTGCTGCGAATTTTTTTTTTGT  997
      |||| ||| |||||||||||||||||| ||||||||||  ||||||||||
seq2  TCCT-CAT-GCCTCTGCATCAGCTCTT-GTGCTGCGAA--TTTTTTTTGT  993

seq1  CTTATTTTTTTTTAATTCTTTAATCTTTTTTTTGCATTCCAGACTTTATC  1047
      ||   |||||||||||   |||||| |||||| |||||||| ||||||| 
seq2  CT--ATTTTTTTTAAT--CTTAATC-TTTTTTGGCATTCCA-ACTTTAT-  1036

seq1  CCCCCCAGGAGTGCCCCCTGACT  1070
      |||||||||||||  ||||||||
seq2  CCCCCCAGGAGTG--CCCTGACT  1057

seq1: chr1_30637771_30638812
seq2: B6Ng01-142F24.g_66_1106 (reverse)

seq1  AATGATCGCTATTAAGTTATTAATAACTGCATTTGTTCAAATGTCCTTCT  50
      ||||||||||| || |||||||||||||||||||||||||||||||||||
seq2  AATGATCGCTA-TAGGTTATTAATAACTGCATTTGTTCAAATGTCCTTCT  49

seq1  TGGACATGAAGCAGATGAAGCTAGAAGATTATCCTGTTTCTCAATAAATG  100
        |||||||||||||||||||||| ||| ||||||||||||| |||||| 
seq2  --GACATGAAGCAGATGAAGCTAG-AGA-TATCCTGTTTCTC-ATAAAT-  93

seq1  CAAAGCTGAGCCTAGAGGTGGTCAGTGGATACTTACAAGAAAGCCATAGC  150
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTGAG-CTAGAGGTGGTCAGTGGATACTTACAAGAAAGCCATAGC  142

seq1  TTATAAATCAATAGGAAGACCTTT-CCGATATTAACTACTA-TTTTATGA  198
      ||||||||| ||| |||||||||| |||||| ||||||||| ||||||||
seq2  TTATAAATC-ATA-GAAGACCTTTCCCGATA-TAACTACTATTTTTATGA  189

seq1  -GCCAGAATTTCCTAGCTCTTTAAAATTTCAAAGCATAACATACAT-ATC  246
       ||||||||||| ||||||||||||||||||||||||||||||||| |||
seq2  GGCCAGAATTTCTTAGCTCTTTAAAATTTCAAAGCATAACATACATAATC  239

seq1  A-TGACAGTTGACCTCCATAATCTCTGTGATTTTATTGCCCCATTCTTCT  295
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACAGTTGACCTCCATAATCTCTGTGATTTTATTGCCCCATTCTTCT  289

seq1  GTTGGG-AAAAGGAAACAAAGGGG-CCAGATGGCTTGATTATGACAACGA  343
      |||||| ||||||||||||||||| |||||||||||||||||||||||||
seq2  GTTGGGAAAAAGGAAACAAAGGGGCCCAGATGGCTTGATTATGACAACGA  339

seq1  AG-TTCATTGAAAATACGTGGTTTTGTGTCGTTTCATTTTACAAAATC-G  391
      || ||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGTTTCATTGAAAATACGTGGTTTTGTGTCGTTTCATTTTACAAAATCGG  389

seq1  GTTA-GGAAATGACTATGACCTCAGTCTAGATTAGAGAAACCAATCTCAG  440
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGGAAATGACTATGACCTCAGTCTAGATTAGAGAAACCAATCTCAG  439

seq1  TAGTAAAATAGTTCAAGAATGTTATAACTCCCATAATTCAGAGATTTCTC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAATAGTTCAAGAATGTTATAACTCCCATAATTCAGAGATTTCTC  489

seq1  ATTACTTTCACAGAGGAAAGTTCAATGGTTATGATTAGGAAAAGCTATCC  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTTTCACAGAGGAAAGTTCAATGGTTATGATTAGGAAAAGCTATCC  539

seq1  CACCACTACATAGCATCCTATGCCAGGAGAGGAGTTTAACACAAGACAAT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTACATAGCATCCTATGCCAGGAGAGGAGTTTAACACAAGACAAT  589

seq1  CAGCTTCTTCTTCTGGCTTCTGTTTCTGTCTACAGATTCTAGATTCATGG  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTCTTCTTCTGGCTTCTGTTTCTGTCTACAGATTCTAGATTCATGG  639

seq1  GCTAGAGATTCTACAGCAACTAGCATTTCTTCTGACAGGCTGATAATGCA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAGATTCTACAGCAACTAGCATTTCTTCTGACAGGCTGATAATGCA  689

seq1  TCAGAATTAATGTTGAGAAGGTCTTGGGTAGCCTAGCTGCAGAAGGCACA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATTAATGTTGAGAAGGTCTTGGGTAGCCTAGCTGCAGAAGGCACA  739

seq1  CAGAATATTAAACCAATGTGAGATCTAAGAAGTGCTGTCTCTGAAAACAG  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATATTAAACCAATGTGAGATCTAAGAAGTGCTGTCTCTGAAAACAG  789

seq1  CTCAACCATGATGAGCCCACGGGGGAAGAGAAGGGGAGAAAGGAAGCCTA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACCATGATGAGCCCACGGGGGAAGAGAAGGGGAGAAAGGAAGCCTA  839

seq1  GCTCAAGTCAAGTTGTTTCCAGATCAGCAGAAATGCTAATTGATTCATGA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAGTCAAGTTGTTTCCAGATCAGCAGAAATGCTAATTGATTCATGA  889

seq1  GCATGACTTTTAAATGTCCACAAGGCAAATCTTCAAAGCCTATCAGGTGT  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGACTTTTAAATGTCCACAAGGCAAATCTTCAAAGCCTATCAGGTGT  939

seq1  TTTGGCCATGGGTTATGAAATAATGACTAGCCGATGCTTTCTTTAAGTCT  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCCATGGGTTATGAAATAATGACTAGCCGATGCTTTCTTTAAGTCT  989

seq1  GACTTAATACAAAGCCACTGACCCCATGTCAGAGGACCTGAGATCTGAAT  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAATACAAAGCCACTGACCCCATGTCAGAGGACCTGAGATCTGAAT  1039

seq1  TC  1042
      ||
seq2  TC  1041