BAC Information

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BAC

Clone NameB6Ng01-142G22
ChromosomeY (Build37)1 (Build37)
Map Location 248,292 - 248,45931,702,869 - 31,703,988
singlet/doubletsingletsinglet
Overlap geneJarid1d
Upstream geneLOC100039202, Zfy1, Ube1y1, Rhoay-ps3
Downstream geneEif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278, EG667079
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142G22.bB6Ng01-142G22.g
ACCDH940632DH940633
length9411,102
definitionDH940632|Mus musculus domesticus DNA, BAC clone: B6Ng01-142G22, 5' end.DH940633|Mus musculus domesticus DNA, BAC clone: B6Ng01-142G22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(248,292 - 248,459)(31,702,869 - 31,703,988)
sequence
gaattctttgtttagctctgtaccccactttttaatggggttatttagtt
tctggagttcagcttctcgagttagttggatatattggatattagtcccc
tataagatttaggattggtaaaaattctttcccaatttgttggtggactt
tttgtcttattgagagtgtcctttaccctatagaagttttgaaattttat
gaggtcccatttgtcgactcttgatcttacagcaaaagccaccactgttc
tgtttagggatttttcccctgtgcccatatattcgagggttttccccact
ttctcctctataaatttcaggctctctggggttgtttgtttttgtttgtt
tgtttgttttttgagacagggtttctctgtatagccctggctgtcctgga
actcactctttagaccaggctggcctcgaactcagagatccatctgtctc
tgcctcccaagtgttgggattaaaggcttgtgccaccatgcccagcagcg
tctctggttttatgtggatgtctttgatccacttagacttgagctttgta
caaggagataagaatggatcaattctcattcttctacatgaaaactgcca
gttgtgccagtaacatttgttgaaaatgctgtctttttttccactggatg
gttttagctaccttgtcaaagatcaagtgaccataggtgtgtgggttcat
ttctgggtcttcaattgtattccattgatctacctatctgtctctgtacc
agtatcattcagtttttttcacaattgctctgtagtacagcttgaagtca
gacatggtgaatcccctttgaacacggtatcatttagtagagtgttgctc
agtttccacgtgaatgatggctttctattatttatgctgttattgaagac
tagccttattccacagtgatctgataggatggatgggataa
gaattctcactttcagtccactttctccattttatccactctacgacctc
agtggctgagatagtaccactcactttcaagggtgggttgtcctcagtca
cagttttctagaagcatgatcagagactcatccaaagggccatttcatcc
agagcattctaaagcccaatgaggatcaaccatcaaaaactaaagaccca
gggtaacagtgctgggaggttggtcttattgaagtgttctggtctgttat
caggaatggattaatactgataaaaaaaaaaaaaagatgttaccacacta
ttcactatgctctctgctttgttgtttttctgcctggtgaagacagagta
tgggtctttgtctttctgtggcctactagatgacagtgagtaaaaacact
tgatgctgactctttgatcttagagttgatagcccaaggttgtgagaaat
aaatttttattgtttacacattactgactgttgaagtttgttatatagca
caagctacttactaacagatgaaattcaacctgatagaagttggagctta
tgaaattcaactgacacatgaaattccacctgatgtaccatttgaggata
aaaagaaaatacaaataataattaaattatgttctgtagtagacagttta
attaagcctgtaggtatttatgagtctaaagagggtatttaaatttctaa
ggaggcattaagctgtgtgctaatatcatctggctagtttgaacttaaca
tagattttcatgtcattagatataaactaggaaaaacaagtgaaaataat
aaataaataaataaataaataaataaataaagtatctttgtgactaaatt
taaactaaatttctattggggtcataaaactttcataattgatattgaat
tattttattctcatagcaccctaaaatacatttgaaatataaacagtaca
ttcagtccaaatcactaatcaaaagttagacaaacaaatcttcaattgcc
atttgagttccaaattattgtttataacctagtaatgactaagaataatt
gtgttttcaagaaaatcattcgatgcacataaataggttctagccatagc
ag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_248292_248459
seq2: B6Ng01-142G22.b_377_541

seq1  TTGTTTGTTTGTTTGTGCTTGTTTGTTTG--TTTCGAGATAGGGTTTCTC  48
          |||||||||| || |||||||||||  ||| |||| ||||||||||
seq2  ----TTGTTTGTTTTTGTTTGTTTGTTTGTTTTTTGAGACAGGGTTTCTC  46

seq1  TGTGTAACCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTC  98
      ||| || ||||||||||||||||||||||| | |||||||||||||||||
seq2  TGTATAGCCCTGGCTGTCCTGGAACTCACTCTTTAGACCAGGCTGGCCTC  96

seq1  GAACTCAGAAATCCACCTGCCTCTGCTTCCCAAGTGCTGGGATTAAAGGA  148
      ||||||||| ||||| ||| |||||| ||||||||| |||||||||||| 
seq2  GAACTCAGAGATCCATCTGTCTCTGCCTCCCAAGTGTTGGGATTAAAGGC  146

seq1  GTGCGCCACCACTGCCCAGC  168
       || ||||||| ||||||||
seq2  TTGTGCCACCA-TGCCCAGC  165

seq1: chr1_31702869_31703988
seq2: B6Ng01-142G22.g_68_1169 (reverse)

seq1  CTGCTATTGCTAGGAACTTATTTTAATGTGCATCGAAAATTGATTTTCTT  50
      ||||||| |||| |||| |||||  ||||||||||||   ||||||||||
seq2  CTGCTATGGCTA-GAACCTATTT--ATGTGCATCGAA---TGATTTTCTT  44

seq1  GAAAACACATTTATTCTTAGTCATTACTAGGTTAATAAACATAAATTTTG  100
      ||||||||| ||||||||||||||||||||||| ||||||| | | ||||
seq2  GAAAACACAATTATTCTTAGTCATTACTAGGTT-ATAAACA-ATAATTTG  92

seq1  AAACTCAAAATTGGCAAATTGAAAGATTTGTTTGTCTAAACTTTTGATTA  150
       ||||||||  |||| ||||| ||||||||||||||| ||||||||||| 
seq2  GAACTCAAA--TGGC-AATTG-AAGATTTGTTTGTCT-AACTTTTGATT-  136

seq1  AGTGATTTTGGACTGAATGTTACTGTTTATATTTCAAATGTATTTTAGTG  200
      ||||| ||||||||||||| |||||||||||||||||||||||||||| |
seq2  AGTGA-TTTGGACTGAATG-TACTGTTTATATTTCAAATGTATTTTAGGG  184

seq1  TGCTATTGAAGAATAAAATAATTCAATATCAATTATGAAAGTTTTATGAC  250
      ||||||   |||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAT--GAGAATAAAATAATTCAATATCAATTATGAAAGTTTTATGAC  232

seq1  CCCAATAGAAATTTAGTTTAAATTTAGTCACAAAGATACTTTATTTATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATAGAAATTTAGTTTAAATTTAGTCACAAAGATACTTTATTTATTT  282

seq1  ATTTATTTATTTATTTATTTATTATTTTCACTTGTTTTTCCTAGTTTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATTTATTTATTTATTATTTTCACTTGTTTTTCCTAGTTTATA  332

seq1  TCTAATGACATGAAAATCTATGTTAAGTTCAAACTAGCCAGATGATATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGACATGAAAATCTATGTTAAGTTCAAACTAGCCAGATGATATTA  382

seq1  GCACACAGCTTAATGCCTCCTTAGAAATTTAAATACCCTCTTTAGACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAGCTTAATGCCTCCTTAGAAATTTAAATACCCTCTTTAGACTCA  432

seq1  TAAATACCTACAGGCTTAATTAAACTGTCTACTACAGAACATAATTTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACCTACAGGCTTAATTAAACTGTCTACTACAGAACATAATTTAAT  482

seq1  TATTATTTGTATTTTCTTTTTATCCTCAAATGGTACATCAGGTGGAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTGTATTTTCTTTTTATCCTCAAATGGTACATCAGGTGGAATTT  532

seq1  CATGTGTCAGTTGAATTTCATAAGCTCCAACTTCTATCAGGTTGAATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTCAGTTGAATTTCATAAGCTCCAACTTCTATCAGGTTGAATTTC  582

seq1  ATCTGTTAGTAAGTAGCTTGTGCTATATAACAAACTTCAACAGTCAGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTAGTAAGTAGCTTGTGCTATATAACAAACTTCAACAGTCAGTAA  632

seq1  TGTGTAAACAATAAAAATTTATTTCTCACAACCTTGGGCTATCAACTCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAAACAATAAAAATTTATTTCTCACAACCTTGGGCTATCAACTCTA  682

seq1  AGATCAAAGAGTCAGCATCAAGTGTTTTTACTCACTGTCATCTAGTAGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAAAGAGTCAGCATCAAGTGTTTTTACTCACTGTCATCTAGTAGGC  732

seq1  CACAGAAAGACAAAGACCCATACTCTGTCTTCACCAGGCAGAAAAACAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAAAGACAAAGACCCATACTCTGTCTTCACCAGGCAGAAAAACAAC  782

seq1  AAAGCAGAGAGCATAGTGAATAGTGTGGTAACATCTTTTTTTTTTTTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGAGAGCATAGTGAATAGTGTGGTAACATCTTTTTTTTTTTTTTA  832

seq1  TCAGTATTAATCCATTCCTGATAACAGACCAGAACACTTCAATAAGACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATTAATCCATTCCTGATAACAGACCAGAACACTTCAATAAGACCA  882

seq1  ACCTCCCAGCACTGTTACCCTGGGTCTTTAGTTTTTGATGGTTGATCCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCCAGCACTGTTACCCTGGGTCTTTAGTTTTTGATGGTTGATCCTC  932

seq1  ATTGGGCTTTAGAATGCTCTGGATGAAATGGCCCTTTGGATGAGTCTCTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGCTTTAGAATGCTCTGGATGAAATGGCCCTTTGGATGAGTCTCTG  982

seq1  ATCATGCTTCTAGAAAACTGTGACTGAGGACAACCCACCCTTGAAAGTGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGCTTCTAGAAAACTGTGACTGAGGACAACCCACCCTTGAAAGTGA  1032

seq1  GTGGTACTATCTCAGCCACTGAGGTCGTAGAGTGGATAAAATGGAGAAAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTACTATCTCAGCCACTGAGGTCGTAGAGTGGATAAAATGGAGAAAG  1082

seq1  TGGACTGAAAGTGAGAATTC  1120
      ||||||||||||||||||||
seq2  TGGACTGAAAGTGAGAATTC  1102