BAC Information

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BAC

Clone NameB6Ng01-142I09
Chromosome11 (Build37)1 (Build37)
Map Location 59,523,371 - 59,523,822173,063,890 - 173,064,844
singlet/doubletsingletsinglet
Overlap geneAA536749
Upstream geneOlfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a, Wnt9a, Gm249, 1110031B06Rik, Jmjd4, BC050078, LOC432565, Zkscan17, Nlrp3, Olfr222, LOC668157, Olfr223, GA_x5J8B7W3UM0-970645-971221, Olfr225
Downstream gene4933433K01Rik, Flcn, Cops3, Nt5m, Med9, Rasd1, Pemt, Rai1, Srebf1, Tom1l2, LOC667892, Lrrc48, Atpaf2, 4933439F18Rik, LOC674310, Drg2, Myo15, Alkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142I09.bB6Ng01-142I09.g
ACCDH940702DH940703
length621945
definitionDH940702|Mus musculus domesticus DNA, BAC clone: B6Ng01-142I09, 5' end.DH940703|Mus musculus domesticus DNA, BAC clone: B6Ng01-142I09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(59,523,371 - 59,523,822)(173,063,890 - 173,064,844)
sequence
gaattcaataatcacaattgcagagatttttctaggaaaaaaaaacaact
atcactttatttgccttaaaactaagaagctgcagactctttgtttgttt
ggttttgtttttgtgtttttgtgtttttgtggggttttttttgtttgttt
gtttttttggtttttttttgagacagggtttctctgtgtagccccggtta
tcatggaactcactctgtagaccaggctagcctcgaactcagaaatccac
ctgcctctgcctcccaagtgctggaattaaaggtgtgtgcttcagacctg
tttttaaaaacagcttttcagcaggacctatcctgctgtgcttgactcct
ggctaaggttcaggacaactttaatcagcctccactgtgcaaactgagac
tgaatcaagagatggatagccagcagataaagttttaaccattttttctt
ttcaacatgaaacatagaacagtcattcagacaacaaagcaaaaacagac
acaaattgacacatggactgatttggtgcatcaaacacagacaatacaga
gagggtagtgaacttgatgtaaccagaactaagagtgtctcgtgtagggg
cctgagagaaagcaggacatc
gaattcaaggccagcctggtctacagagtgagttccaggacagccagggc
tacagagaaaccttgtcttaggaaaccaataaatataaaaaagaaaggca
aaaaaacaaaacaaaacaaaaaaaaacaaaaaaaaacaaacaaaaaaacc
caaacaaaatccaggacatcagattttatttcgttttgagactgaatttt
gcatagccaagcctagcctgaaacttatgagaccaaagacagccttgatc
ttcttctcagagtgctgacttctatttgttgctgttattgatgctgttgt
tggttttggatgtgtttaagaaagagtttctgatctgaaatttgctaagt
agaccagtctggctttgtaatcagagatttgcctgcctctgcctttgaga
gtttgggtccaaatgatggcagcatgtcgtctcccctccccccacttaat
atgagatgctggagacaagtcccaaggcctagcctcaatttgaactagcg
ccatgcagtgttaggatcaacgtaagaggtaacatgaacagttttcagct
gactatcatattcctgacttcaagatctgaatttagaatcctagtcaaga
ctgggtagaagctcaggaatgcaatggcagctactgagggggcaaggcag
gaaggcccagctggttacagagtgaggaccaggcaagcctgggcaatgaa
gtgagccctgtctgaaatacagcagtaatgtgggtgtgttcaaaaccagc
catgggtatacagcaaatttaaggccacctaggttttatgagaccctgtc
tcaaaagccaaaaatggtagtactcactcacatcccagcagttggcaatt
gagttagaggcaggagataagaatttcaaggtcatctgtctaaatagtga
tttaaagccatcttgactatataagacttctggaggccatgcgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_59523371_59523822
seq2: B6Ng01-142I09.b_197_666 (reverse)

seq1  GATGTCCTGCTTTCTCTACTTGCTTGGCCATTAGAC---CAAAGGAAAGG  47
      ||||||||||||||||| |  ||     ||  ||||   |  ||    ||
seq2  GATGTCCTGCTTTCTCT-CAGGCCCCTACACGAGACACTCTTAGTTCTGG  49

seq1  CAAAGT--AGTTGATTCCCTTGCCTGGAAT-CCAGTGAT------ACCTG  88
        |  |  |||| | | || |  ||| | |  | ||| |      |||  
seq2  TTACATCAAGTTCACTACCCTCTCTGTATTGTCTGTGTTTGATGCACCAA  99

seq1  TTCA---CCGGTGAGCAAGTAGTTTAAGATTTTAGCAATGCTACATCTAA  135
       |||   |  |||  ||| | || |  | |||| ||  || |   ||| |
seq2  ATCAGTCCATGTG-TCAATTTGTGTCTG-TTTTTGCTTTGTT--GTCTGA  145

seq1  CTAAAAATTCCATGT----TATTTAAAGGATAAAAACCTTCAGATACATT  181
       | |   ||| ||||    | || ||| || ||||   ||   | |  ||
seq2  ATGACTGTTCTATGTTTCATGTTGAAAAGAAAAAATGGTT---AAAACTT  192

seq1  TGACAGTAGTGTAGGCAACAGCATGA---ACTC-CAGTTATGTATATAGT  227
      |  | |  |  ||  || |  | |||   | || ||||| || | |  | 
seq2  TATCTGCTGGCTATCCATC-TCTTGATTCAGTCTCAGTT-TGCACAGTGG  240

seq1  TCTCT-ATT---CTTCTATATTATTTTTTGAGAGTAGAGTTTTGGATAG-  272
         || |||    || |   | |   || |  ||  ||||   | | || 
seq2  AGGCTGATTAAAGTTGT-CCTGAACCTTAGCCAG--GAGTCAAGCACAGC  287

seq1  AGGATTTG-AAAGATCAAAGGCTGAAGAGAAAGCCGGGCGTGGTGGCGCA  321
      |||||  |    | | ||| ||||     |||  | ||  | |  || ||
seq2  AGGATAGGTCCTGCTGAAAAGCTGTTTTTAAAAACAGGTCT-GAAGCACA  336

seq1  CGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTT  371
      | |||||||| |||||||| |||||||||||||||| |||||||||||||
seq2  CACCTTTAATTCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTT  386

seq1  CGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTATAC  421
      |||||| ||||||||||||||||||||||||| || | || |||||| ||
seq2  CGAGGCTAGCCTGGTCTACAGAGTGAGTTCCATGATAACCGGGGCTACAC  436

seq1  AGAAAAACCCTGTCTC---GAAAAACCAAAAAAA  452
      ||| ||||||||||||    ||||||||||||||
seq2  AGAGAAACCCTGTCTCAAAAAAAAACCAAAAAAA  470

seq1: chr1_173063890_173064844
seq2: B6Ng01-142I09.g_66_1010

seq1  GAATTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGC  50

seq1  TACAGAGAAACCTTGTCTTAGGAAACCAATAAATATAAAAAAGAAAGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGAAACCTTGTCTTAGGAAACCAATAAATATAAAAAAGAAAGGCA  100

seq1  AAAAAACAAAACAAAACAAAAAAAAACAAAAAAAAACAAACAAAAAAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAAAACAAAACAAAAAAAAACAAAAAAAAACAAACAAAAAAACC  150

seq1  CAAACAAAATCCAGGACATCAGATTTTATTTCGTTTTGAGACTGAATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAATCCAGGACATCAGATTTTATTTCGTTTTGAGACTGAATTTT  200

seq1  GCATAGCCAAGCCTAGCCTGAAACTTATGAGACCAAAGACAGCCTTGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGCCAAGCCTAGCCTGAAACTTATGAGACCAAAGACAGCCTTGATC  250

seq1  TTCTTCTCAGAGTGCTGACTTCTATTTGTTGCTGTTATTGATGCTGTTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCAGAGTGCTGACTTCTATTTGTTGCTGTTATTGATGCTGTTGT  300

seq1  TGGTTTTGGATGTGTTTAAGAAAGAGTTTCTGATCTGAAATTTGCTAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTGGATGTGTTTAAGAAAGAGTTTCTGATCTGAAATTTGCTAAGT  350

seq1  AGACCAGTCTGGCTTTGTAATCAGAGATTTGCCTGCCTCTGCCTTTGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGTCTGGCTTTGTAATCAGAGATTTGCCTGCCTCTGCCTTTGAGA  400

seq1  GTTTGGGTCCAAATGATGGCAGCATGTCGTCTCCCCTCCCCCCACTTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGTCCAAATGATGGCAGCATGTCGTCTCCCCTCCCCCCACTTAAT  450

seq1  ATGAGATGCTGGAGACAAGTCCCAAGGCCTAGCCTCAATTTGAACTAGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATGCTGGAGACAAGTCCCAAGGCCTAGCCTCAATTTGAACTAGCG  500

seq1  CCATGCAGTGTTAGGATCAACGTAAGAGGTAACATGAACAGTTTTCAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGCAGTGTTAGGATCAACGTAAGAGGTAACATGAACAGTTTTCAGCT  550

seq1  GACTATCATATTCCTGACTTCAAGATCTGAATTTAGAATCCTAGTCAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATCATATTCCTGACTTCAAGATCTGAATTTAGAATCCTAGTCAAGA  600

seq1  CTGGGTAGAAGCTCAGGAATGCAATGGCAGCTACTGAGGGGGCAAGGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTAGAAGCTCAGGAATGCAATGGCAGCTACTGAGGGGGCAAGGCAG  650

seq1  GAAGGCCCAGCTGGTTACAGAGTGAGGACCAGGCAAGCCTGGGCAATGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCCCAGCTGGTTACAGAGTGAGGACCAGGCAAGCCTGGGCAATGAA  700

seq1  GTGAGCCCTGTCTGAAATACAGCAGTAATGTGGGTGTGTTCAAAACCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCCTGTCTGAAATACAGCAGTAATGTGGGTGTGTTCAAAACCAGC  750

seq1  CATGGGTATACAGCAAATTTAAGGCCAACCTAGGTTTTATGAGACCCTGT  800
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CATGGGTATACAGCAAATTTAAGGCC-ACCTAGGTTTTATGAGACCCTGT  799

seq1  CTCAAAAGCCAAAAATGGTAGTACTCACTCACAATCCCAGCAGTTGGCAA  850
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CTCAAAAGCCAAAAATGGTAGTACTCACTCAC-ATCCCAGCAGTTGGCAA  848

seq1  TTGAGTTAGAGGCAGGAGAATAAGAATTTCAAGGTCATTCTTGTCTAAAT  900
      |||||||||||||||||| |||||||||||||||||||   |||||||||
seq2  TTGAGTTAGAGGCAGGAG-ATAAGAATTTCAAGGTCAT--CTGTCTAAAT  895

seq1  AGTGAATTTAAAGCCAATCTTGACTATATAAGACCTTCTTGGAGGCCAGG  950
      |||| |||||||||| ||||||||||||||||| |||| |||||||||  
seq2  AGTG-ATTTAAAGCC-ATCTTGACTATATAAGA-CTTC-TGGAGGCCA-T  940

seq1  GCGTG  955
      |||||
seq2  GCGTG  945