BAC Information

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BAC

Clone NameB6Ng01-142J09
Chromosome1 (Build37)
Map Location 174,969,406 - 175,112,779
singlet/doubletdoublet
Overlap geneGA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889
Upstream geneNhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16
Downstream geneOlfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142J09.bB6Ng01-142J09.g
ACCDH940745DH940746
length1,1821,190
definitionDH940745|Mus musculus domesticus DNA, BAC clone: B6Ng01-142J09, 5' end.DH940746|Mus musculus domesticus DNA, BAC clone: B6Ng01-142J09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(174,969,406 - 174,970,438)(175,111,560 - 175,112,779)
sequence
gaattcaagcatgagttaactcctgtgcaaaaagtctgagaatttgaaga
caactttggacaaacggtgagagcttgtctcaaaacaatttttcttccca
aatatcttctttgaaccgtgagttattgagaagtttgaaaaccgaaaaca
ctttagaaattctcagctgtcctcctgttactgacttaatttcataattc
cgttgtgatctgagaacatgcatgccatttctagtctcttctttttctaa
tctgtggcttgtggctcagaagcctcatcccgatgagcttcggttggact
tgagaaggatgtttatgtcactgatgttaggtggattagcctgtaaatgt
caattaagtaaagagattgatagctcttgttcactctctgtccattccta
ctgactttttgtctattaaacctctgaattactgacagagggtatcacgg
gttctactctgatcgatgtgtctctgtcctttcatggtagtttttgcctt
gtcttttttggtgctgtttgtttgtttgtttgtctttgttgttgttaaat
ccatgaacatttaggtttccttacagaattaacatgtttttctcaacaca
gaattgtatattcacactatatcattatataatagttttctttatcttcc
atagtctttctggctatgaacacagctcacctgaaaattgtttgtttgga
gcaattaaaaaaaaaaaactcatgttatcatggtatatatttttccattt
cattatgtctaagtggtctgaatagatttcttttcagataggaactgtaa
agaacctgtatgtccatttttccttttttaaaaaaggtctcactatgtaa
ccctgaagtttggtatgtaaaccaggctggtctccaacttagagagacct
ccttgcctcagcatcctgatactaggattaaagaattatatcaccatgcc
catgatcagtcttttccatttttttaaactcacactgcaatgtgtttact
ggtgatgtgtttgggtagatgccatgtatcatgtttttgttcatacactt
acttgactcagtttatgttttgggggtgcgagtactttaatctagctttt
catctagcatagcattttctttaaactgtacttgaatccacactgaattt
aagtaatggcagtcattaagacaccccatccc
gaattctgaaaatcggagaagaagggaaggtcaagaagaaatctctgtgg
gaacttcctgagagttgagttgaagtgggagttgacatggtgaagagcag
aaggagcagcagaatggatttcgaaatgttctttctggatgagacttctt
cctctcataaaccaagtcaccaaggcagcgaaaaggaatttagtggaaaa
ggaagccaataccacacctttctgaaagaaattacatgattcccaatacc
actaaaaaaaaaaaaacaaaaaaacaaaaacaaaaacaaaaacaaaaaca
aaaacaacctgagaaatgtaaatagtaaggaagtctcacatgcaaacttc
cataaaatgcaattaagggtttgaaaaatgaagtaataacagactattct
tccttacctcaaaaaatgaacaatggggtaaattttagattcaattatga
gaaaaagattagtaatgaaaaatcttagtaattagcaggtacaattattg
agcaaatcaaagtattttactgaaaattaatttcaatatccacaaagaat
acatgagtgcacattcactttttttgtaaaacattgtcaaaaatacagaa
atatcaaataaaatatacaaagcagttgtgtatttgatatgctacatatt
caggtaagtaagtctaagatagttctatccttcaatctgattgtcattca
gcgctcctagtactcttgatggaggaaaaattgcctacatatatttcatg
taaacctagttaattaatcatgaataatccaggttatgagtaaaaccaat
acaatttgaggtctccttatttttcttgatttttcttttccccagtgtat
ccttgtaatgaatccagataaagtcagtttctttcccatgtaggaaatcc
catgattatttcttgttccacttcttagattccagtaacatacagacccc
acagcacttagtatcacacattgaagagatttggtgtttcatgttctttc
atcagtgtgattccacactaatttcttgcttgtggtcagcagaggcattc
taagtgcatcctttcataacctccttaattgaattatctagacttcatgt
gtatttgcctgtggacatagtgaattgagtcagtgcatccccaaacatca
ctactcactgctatcctgcctgtcaggacctagcctttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_174969406_174970438
seq2: B6Ng01-142J09.b_234_1225

seq1  TTCATAATTCCGTTGTGATCTGAGAACATGCATGCCATTTCTAGTCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAATTCCGTTGTGATCTGAGAACATGCATGCCATTTCTAGTCTCTT  50

seq1  CTTTTTCTAATCTGTGGCTTGTGGCTCAGAAGCCTCATCCCGATGAGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCTAATCTGTGGCTTGTGGCTCAGAAGCCTCATCCCGATGAGCTT  100

seq1  CGGTTGGACTTGAGAAGGATGTTTATGTCACTGATGTTAGGTGGATTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTGGACTTGAGAAGGATGTTTATGTCACTGATGTTAGGTGGATTAGC  150

seq1  CTGTAAATGTCAATTAAGTAAAGAGATTGATAGCTCTTGTTCACTCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAATGTCAATTAAGTAAAGAGATTGATAGCTCTTGTTCACTCTCTG  200

seq1  TCCATTCCTACTGACTTTTTGTCTATTAAACCTCTGAATTACTGACAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTCCTACTGACTTTTTGTCTATTAAACCTCTGAATTACTGACAGAG  250

seq1  GGTATCACGGGTTCTACTCTGATCGATGTGTCTCTGTCCTTTCATGGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCACGGGTTCTACTCTGATCGATGTGTCTCTGTCCTTTCATGGTAG  300

seq1  TTTTTGCCTTGTCTTTTTTGGTGCTGTTTGTTTGTTTGTTTGTCTTTGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCCTTGTCTTTTTTGGTGCTGTTTGTTTGTTTGTTTGTCTTTGTT  350

seq1  GTTGTTAAATCCATGAACATTTAGGTTTCCTTACAGAATTAACATGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTAAATCCATGAACATTTAGGTTTCCTTACAGAATTAACATGTTTT  400

seq1  TCTCAACACAGAATTGTATATTCACACTATATCATTATATAATAGTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACACAGAATTGTATATTCACACTATATCATTATATAATAGTTTTC  450

seq1  TTTATCTTCCATAGTCTTTCTGGCTATGAACACAGCTCACCTGAAAATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTTCCATAGTCTTTCTGGCTATGAACACAGCTCACCTGAAAATTG  500

seq1  TTTGTTTGGAGCAATTAAAAAAAAAAAACTCATGTTATCATGGTATATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGGAGCAATTAAAAAAAAAAAACTCATGTTATCATGGTATATAT  550

seq1  TTTTCCATTTCATTATGTCTAAGTGGTCTGAATAGATTTCTTTTCAGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATTTCATTATGTCTAAGTGGTCTGAATAGATTTCTTTTCAGATA  600

seq1  GGAACTGTAAAGAACCTGTATGTCCATTTTTCCTTTTTTAAAAAAGGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTGTAAAGAACCTGTATGTCCATTTTTCCTTTTTTAAAAAAGGTCT  650

seq1  CACTATGTAACCCTGAAGTTTGGTATGTAAACCAGGCTGGTCTCCAACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATGTAACCCTGAAGTTTGGTATGTAAACCAGGCTGGTCTCCAACTT  700

seq1  AGAGAGACCTCCTTGCCTCAGCATCCTGAATACTAGGATTAAAGAATTAT  750
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGAGAGACCTCCTTGCCTCAGCATCCTG-ATACTAGGATTAAAGAATTAT  749

seq1  ATCACCATGCCCATGATCAGTCTTTTTCCATTTTTTTTAAACTCACACTG  800
      |||||||||||||||||||||| ||||||| |||||||||||||||||||
seq2  ATCACCATGCCCATGATCAGTC-TTTTCCA-TTTTTTTAAACTCACACTG  797

seq1  CCAATGTGTTTTAACTGGTGATGTGTTTGGGTTAGATGCCATGGTTATCA  850
       ||||||||||  |||||||||||||||||| |||||||||||  |||| 
seq2  -CAATGTGTTT--ACTGGTGATGTGTTTGGG-TAGATGCCATG--TATC-  840

seq1  ATGTTTTATGTTCATTACACTTACTTTGACTCAGTTTTATGTTTTGTGGT  900
      ||||||| |||||| ||||||||| ||||||||| ||||||||||| || 
seq2  ATGTTTT-TGTTCA-TACACTTAC-TTGACTCAG-TTTATGTTTTGGGGG  886

seq1  TGCGAGTACTTTATATCCTTAAGCTGTTTCAATTTCCTTAGCATAGCATT  950
      ||||||||||||| |||    |||| |||||   ||  ||||||||||||
seq2  TGCGAGTACTTTA-ATC---TAGCT-TTTCA---TC--TAGCATAGCATT  926

seq1  TTTCTTTTAAAATCTTGTTACCTTAGAATCTACAACATGAATTTTAAGTT  1000
      ||   |||||| | |  ||      ||||| |||   |||| |||||| |
seq2  TT--CTTTAAACTGTACTT------GAATCCACA--CTGAA-TTTAAG-T  964

seq1  AATGTCAGTCCATTTTAAAGACACCCCCATCCC  1033
      |||| |||| ||||   |||||| |||||||||
seq2  AATGGCAGT-CATT---AAGACA-CCCCATCCC  992

seq1: chr1_175111560_175112779
seq2: B6Ng01-142J09.g_68_1257 (reverse)

seq1  AGAAAGGCTTAGGTCCTGACAGGGCAGGAGTAGGCAAGTTTGGAGTTAGG  50
      |||||||| |||||||||||| ||||||| |||   |||  | ||| |  
seq2  AGAAAGGC-TAGGTCCTGACA-GGCAGGA-TAG--CAGTGAGTAGTGA--  43

seq1  TGGATTGTTTGTGGATGCCAAACTGACTACATTTCACTATGTCACAAGAC  100
           |||||| ||||||   ||||||| || |||||||||||   || |
seq2  -----TGTTTGGGGATGC---ACTGACT-CAATTCACTATGTCCACAGGC  84

seq1  CAAAATACACATGGACAGTCTAAGATAA-TCAA-TAAGAGGTTTATGGAA  148
        |||||||||||   ||||| |||||| |||| ||||  | ||||| ||
seq2  --AAATACACATG--AAGTCT-AGATAATTCAATTAAGGAGGTTATGAAA  129

seq1  GGATGGCCAACCTAGAATGGCCTCTGGCTGACCACAAGCAAGAAATTAAG  198
      |||||    || |||||| |||||| ||||||||||||||||||||| ||
seq2  GGATG---CACTTAGAAT-GCCTCT-GCTGACCACAAGCAAGAAATT-AG  173

seq1  TGGTGGAATCACACTGATGAAAGAACATGGAAACACCAAATTCCTCTCAA  248
      | |||||||||||||||||||||||||| ||||||||||||  || ||||
seq2  T-GTGGAATCACACTGATGAAAGAACAT-GAAACACCAAATCTCT-TCAA  220

seq1  TGTGTGATACTAAGTTGCCTGTGGGGTCTTGTATGTTACTGGAATCTAAG  298
      |||||||||||||||   |||||||||| |||||||||||||||||||||
seq2  TGTGTGATACTAAGT--GCTGTGGGGTC-TGTATGTTACTGGAATCTAAG  267

seq1  AAGTGGAACAAGAAATAATCATGGGATTTCCTACATGGGAAAGAAACTGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGAACAAGAAATAATCATGGGATTTCCTACATGGGAAAGAAACTGA  317

seq1  CTTTATCTGGATTCATTACAAGGATACACTGGGGAAAAGAAAAATCAAG-  397
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTTTATCTGGATTCATTACAAGGATACACTGGGGAAAAGAAAAATCAAGA  367

seq1  AAAATAAGGAGACCTCAAATTGTATTGGTTTTACTCATAACCTGGATTAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAGGAGACCTCAAATTGTATTGGTTTTACTCATAACCTGGATTAT  417

seq1  TCATGATTAATTAACTAGGTTTACATGAAATATATGTAGGCAATTTTTCC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATTAATTAACTAGGTTTACATGAAATATATGTAGGCAATTTTTCC  467

seq1  TCCATCAAGAGTACTAGGAGCGCTGAATGACAATCAGATTGAAGGATAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCAAGAGTACTAGGAGCGCTGAATGACAATCAGATTGAAGGATAGA  517

seq1  ACTATCTTAGACTTACTTACCTGAATATGTAGCATATCAAATACACAACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTTAGACTTACTTACCTGAATATGTAGCATATCAAATACACAACT  567

seq1  GCTTTGTATATTTTATTTGATATTTCTGTATTTTTGACAATGTTTTACAA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTATATTTTATTTGATATTTCTGTATTTTTGACAATGTTTTACAA  617

seq1  AAAAAGTGAATGTGCACTCATGTATTCTTTGTGGATATTGAAATTAATTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTGAATGTGCACTCATGTATTCTTTGTGGATATTGAAATTAATTT  667

seq1  TCAGTAAAATACTTTGATTTGCTCAATAATTGTACCTGCTAATTACTAAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAAAATACTTTGATTTGCTCAATAATTGTACCTGCTAATTACTAAG  717

seq1  ATTTTTCATTACTAATCTTTTTCTCATAATTGAATCTAAAATTTACCCCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCATTACTAATCTTTTTCTCATAATTGAATCTAAAATTTACCCCA  767

seq1  TTGTTCATTTTTTGAGGTAAGGAAGAATAGTCTGTTATTACTTCATTTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCATTTTTTGAGGTAAGGAAGAATAGTCTGTTATTACTTCATTTTT  817

seq1  CAAACCCTTAATTGCATTTTATGGAAGTTTGCATGTGAGACTTCCTTACT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCTTAATTGCATTTTATGGAAGTTTGCATGTGAGACTTCCTTACT  867

seq1  ATTTACATTTCTCAGGTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACATTTCTCAGGTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTGT  917

seq1  TTTTTTGTTTTTTTTTTTTTAGTGGTATTGGGAATCATGTAATTTCTTTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTTTTTTTTTTTTAGTGGTATTGGGAATCATGTAATTTCTTTC  967

seq1  AGAAAGGTGTGGTATTGGCTTCCTTTTCCACTAAATTCCTTTTCGCTGCC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGTGTGGTATTGGCTTCCTTTTCCACTAAATTCCTTTTCGCTGCC  1017

seq1  TTGGTGACTTGGTTTATGAGAGGAAGAAGTCTCATCCAGAAAGAACATTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGACTTGGTTTATGAGAGGAAGAAGTCTCATCCAGAAAGAACATTT  1067

seq1  CGAAATCCATTCTGCTGCTCCTTCTGCTCTTCACCATGTCAACTCCCACT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAATCCATTCTGCTGCTCCTTCTGCTCTTCACCATGTCAACTCCCACT  1117

seq1  TCAACTCAACTCTCAGGAAGTTCCCACAGAGATTTCTTCTTGACCTTCCC  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCAACTCTCAGGAAGTTCCCACAGAGATTTCTTCTTGACCTTCCC  1167

seq1  TTCTTCTCCGATTTTCAGAATTC  1220
      |||||||||||||||||||||||
seq2  TTCTTCTCCGATTTTCAGAATTC  1190