BAC Information

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BAC

Clone NameB6Ng01-142J22
Chromosome1 (Build37)
Map Location 191,133,071 - 191,134,149
singlet/doubletsinglet
Overlap geneKcnk2
Upstream geneUsh2a, Kctd3, LOC100042424
Downstream geneLOC100039307, Cenpf, Ptpn14, LOC100042438, Smyd2, Prox1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142J22.bB6Ng01-142J22.g
ACCDH940767DH940768
length1,2211,068
definitionDH940767|Mus musculus domesticus DNA, BAC clone: B6Ng01-142J22, 5' end.DH940768|Mus musculus domesticus DNA, BAC clone: B6Ng01-142J22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccccttaaagagatagccccgctggccatctatcccttgcttcag
ggaagatgagcggtgatgagagccctgggatgtatgcttgttatagtgtg
tgtgtgtgtgtgttttgtgtttggcacatgtgttaggtgcagagtgtgcg
gcccgcactttcgccatggtagcgtaggcttttgctgcagtggaggcggg
gcaatctcctcagattcggtttgccgctctaaaagaaattatgctgcgtt
atgccatgggttgcgaggctaagcactgcacagaggatagcttgctgttg
gcatcctgtggaaggcatgtctgattgcatgaaggttcagtgtcctagtt
cccttcccccaggaaaaacgacacgggagctggccaagacctctctgggt
gatgagcctaagggatggttttgtgtagggcccctatgcttgcacactgg
ggatcagacctctaccttcacccatgaggcttgcttgcagcaattaagat
ctggccatagattaatcaacatcctggccttttgatgcacctgccgcaag
caaaacacaatctccccaggtgtggcttggcataatagagagatagtcag
tgataagactccctgggcatgtcaccaacctaagacagggatcaaaccaa
tgctgtttgtcacccaaggacgggtaaggggcatggctgcggggggctat
ctacagacattctctctgccaaaaaagaaaaaagggggaattgtggggag
cgggtgtggcggcagtcccaaaggcgccagggactgcagctaagtcatat
gacttgcacctgacttcctcatataagacacaaacatcttgagtgctgcg
caggtgtaccaggatacagtgaatcccatttggtggagatatgcccctgc
tgccctgattagctgaagctgcgtgcctggtgaagtagcgtggcctgctg
tgcgtggatgggaactgaggtataaagagtgagaaggcccgggtaagagg
ggagatattattcgagagaggaatactaatagtgggggaaaattaaaacc
agggaaaattattaaaccagggagaattaaacggggatataaaacaggga
atataaaacaggaattatacaggaatatatggaagaaaacggacgaataa
gtgtgcatatctgtgaacgtgcattctctgtgcagattgaagcgccctag
acatgaggcatagccatctta
gaattctgcccgacagactcagaagtgcccctctgagccatctccccaca
tcttcccctctatttagggattgtgcatttgcaggtcaaaactattttta
tgcaggctagtgaggcacacagcgtgtttatcactccctttgaagtgtaa
gctgaactcctattagtagaaacaaaactttaaaacccaaaacgggacaa
gaggactggggggtggagccatccatcaaagggccagaaagagacagaca
cactgttgatcgtctgagttcactttcctggtcctgtgcacgtaggattg
ttaatcatgaaaataatattgagttgactgaatagaatcctgaaaggaaa
attaactcctaatccctaaagcagagcggtttttacaacatacatgtatt
tattttttagtgtctatagccctaagtccttcctcagctgttgccaacag
agcataatcatattctcaggcattttgaagtctttgcagctattccctat
ttaactttttaaattgtattttatgaggattatttgcctgcgtgtatgtt
tgtgcatcacacacagaatcctagtgcccatggagaacacaatagggcat
cagatcccctggaactagagttagacagttgtgcatcagcatgcagtgtg
acaaattgacctgagatcctctgggagagcagccagtgctcttaatctct
gagccatctcaccggctcctagctcttttgttgagacaggatcttgctga
gtaccttccacagccctggaactcactatatagactagagtgggtagaac
tctaacccagagttctacctgcctctgcccctagagagctgggattctag
gagtgagccacccaatttatactgttggtgtctcctaattagcagcagta
atatatttccactggatatatttagatacatttattcaatttgtatctga
gtgcaggaggtggaaggaaaagatgcttaaataatctggacattcacaag
ctgaatacagtgttaccagaaagttaagctggtctagtctggccaaacag
aaggatcctcagagccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_191133071_191134149
seq2: B6Ng01-142J22.g_68_1135

seq1  GAATTCTGCCCGACAGACTCAGAAGTGCCCCTCTGAGCCATCTCCCCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCCGACAGACTCAGAAGTGCCCCTCTGAGCCATCTCCCCACA  50

seq1  TCTTCCCCTCTATTTAGGGATTGTGCATTTGCAGGTCAAAACTATTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCCTCTATTTAGGGATTGTGCATTTGCAGGTCAAAACTATTTTTA  100

seq1  TGCAGGCTAGTGAGGCACACAGCGTGTTTATCACTCCCTTTGAAGTGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCTAGTGAGGCACACAGCGTGTTTATCACTCCCTTTGAAGTGTAA  150

seq1  GCTGAACTCCTATTAGTAGAAACAAAACTTTAAAACCCAAAACGGGACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAACTCCTATTAGTAGAAACAAAACTTTAAAACCCAAAACGGGACAA  200

seq1  GAGGACTGGGGGGTGGAGCCATCCATCAAAGGGCCAGAAAGAGACAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTGGGGGGTGGAGCCATCCATCAAAGGGCCAGAAAGAGACAGACA  250

seq1  CACTGTTGATCGTCTGAGTTCACTTTCCTGGTCCTGTGCACGTAGGATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTGATCGTCTGAGTTCACTTTCCTGGTCCTGTGCACGTAGGATTG  300

seq1  TTAATCATGAAAATAATATTGAGTTGACTGAATAGAATCCTGAAAGGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCATGAAAATAATATTGAGTTGACTGAATAGAATCCTGAAAGGAAA  350

seq1  ATTAACTCCTAATCCCTAAAGCAGAGCGGTTTTTACAACATACATGTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTCCTAATCCCTAAAGCAGAGCGGTTTTTACAACATACATGTATT  400

seq1  TATTTTTTAGTGTCTATAGCCCTAAGTCCTTCCTCAGCTGTTGCCAACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTAGTGTCTATAGCCCTAAGTCCTTCCTCAGCTGTTGCCAACAG  450

seq1  AGCATAATCATATTCTCAGGCATTTTGAAGTCTTTGCAGCTATTCCCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAATCATATTCTCAGGCATTTTGAAGTCTTTGCAGCTATTCCCTAT  500

seq1  TTAACTTTTTAAATTGTATTTTATGAGGATTATTTGCCTGCGTGTATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTTTTAAATTGTATTTTATGAGGATTATTTGCCTGCGTGTATGTT  550

seq1  TGTGCATCACACACAGAATCCTAGTGCCCATGGAGAACACAATAGGGCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATCACACACAGAATCCTAGTGCCCATGGAGAACACAATAGGGCAT  600

seq1  CAGATCCCCTGGAACTAGAGTTAGACAGTTGTGCATCAGCATGCAGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCCCTGGAACTAGAGTTAGACAGTTGTGCATCAGCATGCAGTGTG  650

seq1  ACAAATTGACCTGAGATCCTCTGGGAGAGCAGCCAGTGCTCTTAATCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTGACCTGAGATCCTCTGGGAGAGCAGCCAGTGCTCTTAATCTCT  700

seq1  GAGCCATCTCACCGGCTCCTAGCTCTTTTGTTGAGACAGGATCTTGCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATCTCACCGGCTCCTAGCTCTTTTGTTGAGACAGGATCTTGCTGA  750

seq1  GTACCTTCCACAGCCCTGGAACTCACTATATAGACTAGAGTGGGTAGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTTCCACAGCCCTGGAACTCACTATATAGACTAGAGTGGGTAGAAC  800

seq1  TCTAACCCAGAGTTCTACCTGCCTCTGCCCCTAGAGAGCTGGGATTCTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACCCAGAGTTCTACCTGCCTCTGCCCCTAGAGAGCTGGGATTCTAG  850

seq1  GAGTGAGCCACCCAATTTAATACTGTTGGTGTCTCCTAATTAGCAGCAGT  900
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GAGTGAGCCACCCAATTT-ATACTGTTGGTGTCTCCTAATTAGCAGCAGT  899

seq1  AATATATTTCCACTGGATATATTTAGATACATTTATTCAATTTGTATCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTTCCACTGGATATATTTAGATACATTTATTCAATTTGTATCTG  949

seq1  AGTGCCAGGAGGTGGAAGGAAAAGATGCCTTATATAAATCTGAACCATTC  1000
      |||| |||||||||||||||||||||| |||| || |||||| | |||||
seq2  AGTG-CAGGAGGTGGAAGGAAAAGATG-CTTAAAT-AATCTGGA-CATTC  995

seq1  AACAAGCTGAATACAGTGTAACCAGAAAAGTTAAAGCCTGGTCTAGTCCT  1050
       |||||||||||||||||| ||||| ||||||||   |||||||||| ||
seq2  -ACAAGCTGAATACAGTGTTACCAG-AAAGTTAA--GCTGGTCTAGT-CT  1040

seq1  GGCAAACCAGAAGGAACCACAAGAGCCAC  1079
      ||| || |||||||| || | ||||||||
seq2  GGCCAAACAGAAGGATCCTC-AGAGCCAC  1068