BAC Information

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BAC

Clone NameB6Ng01-142P23
Chromosome1 (Build37)
Map Location 39,238,554 - 39,376,753
singlet/doubletdoublet
Overlap geneNpas2, LOC100041999
Upstream geneAff3, Lonrf2, Chst10, EG625775, Nms, Pdcl3
Downstream geneRpl31, Tbc1d8, D1Bwg0212e, Rnf149, EG329126, Creg2, 4933400N17Rik, LOC100042065, Map4k4, Il1r2, Il1r1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-142P23.bB6Ng01-142P23.g
ACCDH941051DH941052
length1,072998
definitionDH941051|Mus musculus domesticus DNA, BAC clone: B6Ng01-142P23, 5' end.DH941052|Mus musculus domesticus DNA, BAC clone: B6Ng01-142P23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,375,670 - 39,376,753)(39,238,554 - 39,239,547)
sequence
catgctctatcaccattaaggtttgacaaacagtggaagtgtctaacagg
ggatcctacctggagagttgaagggtgacacagctttaggtcttcagact
taaatgtttggtccaaaggttcccaagctctgagcttttctaagatagta
tctatcagtcatgataaggacacaggatgagttgcaataatggacgaatg
gcctggggatcttaggtggaagggaacttatctcatggggtttaggaaag
gatgggggtgagatcagacctagcagtgaatgttagttagcagtaaagaa
ggaagaaagatgtcctgaccatgtcccactcggccagcagctcagtcatc
tcagctaaacactctccttggatgagctgcgatatgctatttgcaaagtc
tgtaagaaagcatatgactagtccacacagaatgtaagagctaactttct
aggcatttcttgaaacaaatgagagacgatgctgatggatatctagaaag
acgtggcttagcagtcagaggtgagattggctcagcagaaggaggttcct
aacgctctaagtttgacagatattactatgtgtttaattatggtgtggag
ccattgagaggtaaatactttccagtccattcatgaggcatcgtctccca
ctaatgaagtgctaagtgatttcagactccatgttttcttctttgcagct
tgctctattaggtctgttttgaacagcaagatgtcagggtttacagcatg
ctctgttgggtgtgttctgaacagccagatagcaacgttcttgggagaca
gtcgcatgcttactctgccacatcctaacccgagtaccgcctacgtggct
cgaatcatgcttggcttctttttattcctgccaggtctgcttagcataaa
ggcagcaagatagagcctctatgaaatggctaggttgcagtttgctgaac
taaggaaactgtatgtctacttaatcttttctactttctggcattcactg
agattttaagggcagaggactttggtacgagtaagaattcctcctgaggt
tatggtggggtgaggggtaaat
gaattcctgaactgaaagtcaggagatggtcagataagagataatattca
aaggcacagtgcatcttccaagcttgtatcaataggccaaaaccaaaagc
attattaataggtgtgtggaagtttggagagtgagatggggcagaaagga
ggaaagataaaccaggttaatgtgacaaatgctaaggtggagaagtccga
acagaaatggcaggttgttgagaaagtgggcatagagctaagagaaggtg
tcaggcacagaggtgtagaccagagtgacaggtttcagacaagaatcgta
gtaatggaggaccagatcaatgggctgagggtatgtccctagaagcgtgc
tcactgatgcagtggaggaaagcaatggtccaagaaagggctgtcctaag
ggagcagggtccaagatcaagtcttgtatagaggaagcacaatgatgaac
cattaaccagaaagaactggacaaatgaactgctctattttctctctcgt
ttttgataattacattcagatgtaattcacttaccatataattacccatt
taaaatacacactgactggctttccctgtaactagagttatacaaccctg
atcagcatcgatttcagaacattgcgttatcttcatatcctttatccatc
aaatgccaagccgtcacattccaagaagaaattcactctgcttctatctt
tacctgtgccggccattcacatagatagacttcttggtcctacggactgc
cttctttcacccagaacaattgtctcatggtccattcgtggtgcactctg
tgtcaggatgccactcctattaatgaccaactaatagtccatcatgtaag
taattccgtgttttgttttatccattcaggcgattaaacgagtcattttc
caggttggagtcctaatcaataactccgctgtggagtggtttgtgcacaa
ggctcttcatttctcatgggcgcatctcacacactgaacggcaggctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_39375670_39376753
seq2: B6Ng01-142P23.b_57_1128 (reverse)

seq1  ATTTACCCCTACCCACACTA-ACCCTCAGGAGGAAATCTTAACTCCGTTA  49
      ||||||||||  || ||| | | |||||||||||| |||| ||||   ||
seq2  ATTTACCCCTCACCCCACCATAACCTCAGGAGGAATTCTT-ACTC--GTA  47

seq1  CCAAAGTCCTCTGGCCCTTTAAAAATCTCAGTGAATGCCAGAAAGTAGAA  99
      |||||||||||| ||||||  |||||||||||||||||||||||||||||
seq2  CCAAAGTCCTCT-GCCCTT--AAAATCTCAGTGAATGCCAGAAAGTAGAA  94

seq1  AAGATTTAAGTAAGACATACAGTTTCCCTTTAGTTCAGCAAACTGCCAAC  149
      |||| |||||| |||||||||||||||  |||||||||||||||| ||||
seq2  AAGA-TTAAGT-AGACATACAGTTTCC--TTAGTTCAGCAAACTG-CAAC  139

seq1  CTAGCCATTTCATAGAGGCTCTTATCTTGCTTGCCTTTATGCTAAGCAGA  199
      ||||||||||||||||||||| |||||||| |||||||||||||||||||
seq2  CTAGCCATTTCATAGAGGCTC-TATCTTGC-TGCCTTTATGCTAAGCAGA  187

seq1  CCTGGCAGGAATAAAAAGAAGCCAAGCATGATTCGAGCCACGTAGGCGGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCAGGAATAAAAAGAAGCCAAGCATGATTCGAGCCACGTAGGCGGT  237

seq1  ACTCGGGTTAGGATGTGGCAGAGTAAGCATGCGACTGTCTCCCAAGAACG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGGGTTAGGATGTGGCAGAGTAAGCATGCGACTGTCTCCCAAGAACG  287

seq1  TTGCTATCTGGCTGTTCAGAACACACCCAACAGAGCATGCTGTAAACCCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTATCTGGCTGTTCAGAACACACCCAACAGAGCATGCTGTAAACCCT  337

seq1  GACATCTTGCTGTTCAAAACAGACCTAATAGAGCAAGCTGCAAAGAAGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCTTGCTGTTCAAAACAGACCTAATAGAGCAAGCTGCAAAGAAGAA  387

seq1  AACATGGAGTCTGAAATCACTTAGCACTTCATTAGTGGGAGACGATGCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGAGTCTGAAATCACTTAGCACTTCATTAGTGGGAGACGATGCCT  437

seq1  CATGAATGGACTGGAAAGTATTTACCTCTCAATGGCTCCACACCATAATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATGGACTGGAAAGTATTTACCTCTCAATGGCTCCACACCATAATT  487

seq1  AAACACATAGTAATATCTGTCAAACTTAGAGCGTTAGGAACCTCCTTCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATAGTAATATCTGTCAAACTTAGAGCGTTAGGAACCTCCTTCTG  537

seq1  CTGAGCCAATCTCACCTCTGACTGCTAAGCCACGTCTTTCTAGATATCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCAATCTCACCTCTGACTGCTAAGCCACGTCTTTCTAGATATCCA  587

seq1  TCAGCATCGTCTCTCATTTGTTTCAAGAAATGCCTAGAAAGTTAGCTCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATCGTCTCTCATTTGTTTCAAGAAATGCCTAGAAAGTTAGCTCTT  637

seq1  ACATTCTGTGTGGACTAGTCATATGCTTTCTTACAGACTTTGCAAATAGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTGTGTGGACTAGTCATATGCTTTCTTACAGACTTTGCAAATAGC  687

seq1  ATATCGCAGCTCATCCAAGGAGAGTGTTTAGCTGAGATGACTGAGCTGCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCGCAGCTCATCCAAGGAGAGTGTTTAGCTGAGATGACTGAGCTGCT  737

seq1  GGCCGAGTGGGACATGGTCAGGACATCTTTCTTCCTTCTTTACTGCTAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGAGTGGGACATGGTCAGGACATCTTTCTTCCTTCTTTACTGCTAAC  787

seq1  TAACATTCACTGCTAGGTCTGATCTCACCCCCATCCTTTCCTAAACCCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTCACTGCTAGGTCTGATCTCACCCCCATCCTTTCCTAAACCCCA  837

seq1  TGAGATAAGTTCCCTTCCACCTAAGATCCCCAGGCCATTCGTCCATTATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATAAGTTCCCTTCCACCTAAGATCCCCAGGCCATTCGTCCATTATT  887

seq1  GCAACTCATCCTGTGTCCTTATCATGACTGATAGATACTATCTTAGAAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTCATCCTGTGTCCTTATCATGACTGATAGATACTATCTTAGAAAA  937

seq1  GCTCAGAGCTTGGGAACCTTTGGACCAAACATTTAAGTCTGAAGACCTAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAGCTTGGGAACCTTTGGACCAAACATTTAAGTCTGAAGACCTAA  987

seq1  AGCTGTGTCACCCTTCAACTCTCCAGGTAGGATCCCCTGTTAGACACTTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGTCACCCTTCAACTCTCCAGGTAGGATCCCCTGTTAGACACTTC  1037

seq1  CACTGTTTGTCAAACCTTAATGGTGATAGAGCATG  1084
      |||||||||||||||||||||||||||||||||||
seq2  CACTGTTTGTCAAACCTTAATGGTGATAGAGCATG  1072

seq1: chr1_39238554_39239547
seq2: B6Ng01-142P23.g_67_1064

seq1  GAATTCCTGAACTGAAAGTCAGGAGATGGTCAGATAAGAGATAATATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAACTGAAAGTCAGGAGATGGTCAGATAAGAGATAATATTCA  50

seq1  AAGGCACAGTGCATCTTCCAAGCTTGTATCAATAGGCCAAAACCAAAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACAGTGCATCTTCCAAGCTTGTATCAATAGGCCAAAACCAAAAGC  100

seq1  ATTATTAATAGGTGTGTGGAAGTTTGGAGAGTGAGATGGGGCAGAAAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAATAGGTGTGTGGAAGTTTGGAGAGTGAGATGGGGCAGAAAGGA  150

seq1  GGAAAGATAAACCAGGTTAATGTGACAAATGCTAAGGTGGAGAAGTCCGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGATAAACCAGGTTAATGTGACAAATGCTAAGGTGGAGAAGTCCGA  200

seq1  ACAGAAATGGCAGGTTGTTGAGAAAGTGGGCATAGAGCTAAGAGAAGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATGGCAGGTTGTTGAGAAAGTGGGCATAGAGCTAAGAGAAGGTG  250

seq1  TCAGGCACAGAGGTGTAGACCAGAGTGACAGGTTTCAGACAAGAATCGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCACAGAGGTGTAGACCAGAGTGACAGGTTTCAGACAAGAATCGTA  300

seq1  GTAATGGAGGACCAGATCAATGGGCTGAGGGTATGTCCCTAGAAGCGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGGAGGACCAGATCAATGGGCTGAGGGTATGTCCCTAGAAGCGTGC  350

seq1  TCACTGATGCAGTGGAGGAAAGCAATGGTCCAAGAAAGGGCTGTCCTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGATGCAGTGGAGGAAAGCAATGGTCCAAGAAAGGGCTGTCCTAAG  400

seq1  GGAGCAGGGTCCAAGATCAAGTCTTGTATAGAGGAAGCACAATGATGAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGGGTCCAAGATCAAGTCTTGTATAGAGGAAGCACAATGATGAAC  450

seq1  CATTAACCAGAAAGAACTGGACAAATGAACTGCTCTATTTTCTCTCTCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACCAGAAAGAACTGGACAAATGAACTGCTCTATTTTCTCTCTCGT  500

seq1  TTTTGATAATTACATTCAGATGTAATTCACTTACCATATAATTACCCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATAATTACATTCAGATGTAATTCACTTACCATATAATTACCCATT  550

seq1  TAAAATACACACTGACTGGCTTTCCCTGTAACTAGAGTTATACAACCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATACACACTGACTGGCTTTCCCTGTAACTAGAGTTATACAACCCTG  600

seq1  ATCAGCATCGATTTCAGAACATTGCGTTATCTTCATATCCTTTATCCATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCATCGATTTCAGAACATTGCGTTATCTTCATATCCTTTATCCATC  650

seq1  AAATGCCAAGCCGTCACATTCCAAGAAGAAATTCACTCTGCTTCTATCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCAAGCCGTCACATTCCAAGAAGAAATTCACTCTGCTTCTATCTT  700

seq1  TACCTGTGCCGGCCATTCACATAGATAGACTTCTTGGTCCTACGGACTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTGCCGGCCATTCACATAGATAGACTTCTTGGTCCTACGGACTGC  750

seq1  CTTCTTTCACCCAGAACAATTGTCTCATGGTCCATTCGTGGTGCACTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCACCCAGAACAATTGTCTCATGGTCCATTCGTGGTGCACTCTG  800

seq1  TGTCAGGATGCCACTCCTATT-ATGACCAACTAATAGTCCATCATGTAAG  849
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTCAGGATGCCACTCCTATTAATGACCAACTAATAGTCCATCATGTAAG  850

seq1  TAATTCCGTGTTTTG-TTTATCCATTCAGGCGA-TAAACGAGTCA-TTTC  896
      ||||||||||||||| ||||||||||||||||| ||||||||||| ||||
seq2  TAATTCCGTGTTTTGTTTTATCCATTCAGGCGATTAAACGAGTCATTTTC  900

seq1  CAGGTTGGAGTCCTAATCAATAACTCCGCTGT-GAGT-GTTTGTGCAC-A  943
      |||||||||||||||||||||||||||||||| |||| |||||||||| |
seq2  CAGGTTGGAGTCCTAATCAATAACTCCGCTGTGGAGTGGTTTGTGCACAA  950

seq1  GGCTCCTTCATTTCTCATGGGCGCATCTTCACACACTGAACCGCCAGGCT  993
      |||| |||||||||||||||||||||| |||||||||||| || ||||||
seq2  GGCT-CTTCATTTCTCATGGGCGCATC-TCACACACTGAA-CGGCAGGCT  997

seq1  C  994
      |
seq2  C  998