BAC Information

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BAC

Clone NameB6Ng01-143B14
ChromosomeX (Build37)1 (Build37)
Map Location 27,557,826 - 27,558,76369,326,641 - 69,327,156
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042154, EG664861, LOC664866, LOC100042175, LOC100039194, LOC100039208, EG664877, LOC664881, LOC100039240, LOC100039248, LOC100039073, EG664890, LOC664898
Downstream geneLOC22526, EG664906, LOC664917, LOC100039324, LOC100039334, LOC100039096, EG664923, LOC100039364, LOC100039377, LOC100039386, LOC100039127, EG664944, LOC100039423, LOC100039145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143B14.bB6Ng01-143B14.g
ACCDH941126DH941127
length1,1131,159
definitionDH941126|Mus musculus domesticus DNA, BAC clone: B6Ng01-143B14, 5' end.DH941127|Mus musculus domesticus DNA, BAC clone: B6Ng01-143B14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(27,557,826 - 27,558,763)(69,326,641 - 69,327,156)
sequence
gaattcagtgtgggtaggggcagggtagatgtctagatgaccatgagaat
gaagggaaaactgaaacttgcaggggtatagagtgtagggatgtggcatg
ttgaggatgagactgaaacctgggaaagagaaggcactcaaatatcaatg
tggatgatcttaactgtgacttacaatattgtgctatggaatctgaatgg
tccacctcttgtgtctatgtaggaactccagtgaagctatcgtcacacca
acacatcttcaaactttggacctaaaattttttctgtctatgagaaatac
atggacaagagatagaaaaaacactaatgaatggcaaagcaataactgcc
caaactagagacccatcccatgggcaacaaccaatccctgacagcattaa
tgatacagttataggattgcagacagaagcatgttgacttctaggaggct
ctactcatcagctgactcagacagacacagacacccacagccaaatattg
aatggagcttgggtctcttatggtagagttggggagaaaattgagggccc
caagggggataagaactccaaaggaatgccaacacaatcaaacaacttgg
atcactgaggctctcagatgctgaactagcaactaaggagcatacacagg
ctgaacctgggccttgcacacatttgttgcagagtgcaggtccaacatca
gtatagattccgtggtgtttattgcaagataaatcagtgatattatcgta
gactcagagggaagaagagatcatgcaaataaatttcttctccagtggca
ggatggatcattgacttcaatagcgaatctggtgtcaaaaaggatattta
attaatatgatctgcattgagggctgcatacatgcatcaaggaattccac
tatagttacttgtggcagtaggatctcaataatacctatgtaccaccatc
ttttttgctgtaagcagtattattgaatatcagtatagctccagtgcaag
tagatcaaccacatctctgaggtgactccgacactcacatgaagtagtag
cagcactgttcatgacttcaagatagattcttctgcagtaggctcaaaga
tatcacaagctct
gaattctcacctgaggaataccgaatggaagagaagcacctgaaaaaatg
ttcaaaatccttaaccatcagggaaatgcaaatcaaaacaacactgagat
tccacttcactccagtcagaatggctaagatcaaaaaatcaggtggcagc
agatgctggcgaggatgtggagaaaggggaacactcctccatagttggtg
ggattgcaagcttgtacaacctctctggaaatcagtctggcggttcctca
gaaaattggacatattactaccggaggatcccacaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaagaacacatcctccactat
gttcatagcagccttatttataatagccagaaagtggaaataacacagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
aaatactactcagctatttacaaaaatgaatttatgaaattcctaggcaa
atggatggacctggagggtatcatcctgagtgaagtaagccaatcacaaa
ggaactcgcacaatatgtactcactgataagtggatattagcccagaaac
ttaggatacccaatatataagatacaacttgccaaacgcatgaatttcaa
gaagaacgaagaccaaagtgtggacactctaccctttcttaaaaatggga
acaaaacacccatagaaggagttacacagacaaaatttggagctgtgacg
aaaggatggaccatctagtgatttccatatgcagggatccatcccataat
cagcttccaaatgctgacaccattgcatacactagtaagattttgctgaa
aggacccagataatagctctctcttgtgaagagtatgccggggccctagc
aaacacagaagtggatgatcacagtcagctattggatgggtcaccacggc
cccttattgaagaagctagaagaattacccagaagaaaaagggactgcaa
ccctatattgtgaacacaatattgaactaaccagtacccggagctctctg
gcaatagctgcatatgtatcaaaatgctaatcagctactccactgcagag
aggccaggactgcaacttaatggccagtcgggacacatgggctcatattg
gcagtggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_27557826_27558763
seq2: B6Ng01-143B14.b_239_1161

seq1  ATCTGAATGGTCCACCTCTTGTGTCTATGTAGGAACTCCAGTGAAGCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAATGGTCCACCTCTTGTGTCTATGTAGGAACTCCAGTGAAGCTAT  50

seq1  CGTCACACCAACACATCTTCAAACTTTGGACCTAAAATTTTTTCTGTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCACACCAACACATCTTCAAACTTTGGACCTAAAATTTTTTCTGTCTA  100

seq1  TGAGAAATACATGGACAAGAGATAGAAAAAACACTAATGAATGGCAAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAATACATGGACAAGAGATAGAAAAAACACTAATGAATGGCAAAGC  150

seq1  AATAACTGCCCAAACTAGAGACCCATCCCATGGGCAACAACCAATCCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTGCCCAAACTAGAGACCCATCCCATGGGCAACAACCAATCCCTG  200

seq1  ACAGCATTAATGATACAGTTATAGGATTGCAGACAGAAGCATGTTGACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATTAATGATACAGTTATAGGATTGCAGACAGAAGCATGTTGACTT  250

seq1  CTAGGAGGCTCTACTCATCAGCTGACTCAGACAGACACAGACACCCACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGGCTCTACTCATCAGCTGACTCAGACAGACACAGACACCCACAG  300

seq1  CCAAATATTGAATGGAGCTTGGGTCTCTTATGGTAGAGTTGGGGAGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATATTGAATGGAGCTTGGGTCTCTTATGGTAGAGTTGGGGAGAAAA  350

seq1  TTGAGGGCCCCAAGGGGGATAAGAACTCCAAAGGAATGCCAACACAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGCCCCAAGGGGGATAAGAACTCCAAAGGAATGCCAACACAATCA  400

seq1  AACAACTTGGATCACTGAGGCTCTCAGATGCTGAACTAGCAACTAAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTTGGATCACTGAGGCTCTCAGATGCTGAACTAGCAACTAAGGAG  450

seq1  CATACACAGGCTGAACCTGGGCCTTGCACACATTTGTTGCAGAGTGCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACAGGCTGAACCTGGGCCTTGCACACATTTGTTGCAGAGTGCAGG  500

seq1  TCCAACATCAGTATAGATTCCGTGGTGTTTATTGCAAGATAAATCAGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACATCAGTATAGATTCCGTGGTGTTTATTGCAAGATAAATCAGTGA  550

seq1  TATTATCGTAGACTCAGAGGGAAGAAGAGATCATGCAAATAAATTTCTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATCGTAGACTCAGAGGGAAGAAGAGATCATGCAAATAAATTTCTTC  600

seq1  TCCAGTGGCAGGATGGATCATTGACTTCAATAGCGAATCTGGTGTCAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGGCAGGATGGATCATTGACTTCAATAGCGAATCTGGTGTCAAAA  650

seq1  AGGATATTTAATTAATATGATCTGCATTGAGGGCTGCTTACATGCATCAA  700
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGGATATTTAATTAATATGATCTGCATTGAGGGCTGCATACATGCATCAA  700

seq1  GGAATT-CACTATAGTTACTTGTGGCAGGTAGGATCTCAATAATACCTAT  749
      |||||| |||||||||||||||||||| ||||||||||||||||||||||
seq2  GGAATTCCACTATAGTTACTTGTGGCA-GTAGGATCTCAATAATACCTAT  749

seq1  GTA-CACCATCTTTTTTTGCTGGTAAAAGCAGGTATTATTG-ATATCAGT  797
      ||| ||||||| ||||||||||    ||||| ||||||||| ||||||||
seq2  GTACCACCATC-TTTTTTGCTG---TAAGCA-GTATTATTGAATATCAGT  794

seq1  ATAGCTTCCAGTTGCAAGTAGGATCAAACACATCTCTGAGGTGGAACTCA  847
      ||||| ||||| |||||||| |||||| |||||||||||||||  |||| 
seq2  ATAGC-TCCAG-TGCAAGTA-GATCAACCACATCTCTGAGGTG--ACTCC  839

seq1  GAACACTCCACATGAAGTAGGTAGCAGCACTGTCCATGAACTTCAAGATA  897
      | ||||| ||||||||||| ||||||||||||| |||| |||||||||||
seq2  G-ACACT-CACATGAAGTA-GTAGCAGCACTGTTCATG-ACTTCAAGATA  885

seq1  GATTCTTCTGGCAGTAGGGCTCACAGATATCACCAAGCTCT  938
      ||||||||| |||||| |||||| |||||||| ||||||||
seq2  GATTCTTCT-GCAGTA-GGCTCAAAGATATCA-CAAGCTCT  923

seq1: chr1_69326641_69327156
seq2: B6Ng01-143B14.g_1098_1227

seq1  ATCAGTACCCCGGAGCTCT-TGACTCTAGCTGCATATGTATCAAAAGATG  49
      | ||||| ||||||||||| || |  |||||||||||||||||||  |||
seq2  ACCAGTA-CCCGGAGCTCTCTGGCAATAGCTGCATATGTATCAAA--ATG  47

seq1  GCCTAGTCAGC--CATCACTGGAAAGAGAGGCCCATTGGACACACAAACT  97
        ||| |||||  |  |||||   |||||||||    ||  ||   ||||
seq2  --CTAATCAGCTACTCCACTG--CAGAGAGGCC---AGG--ACTGCAACT  88

seq1  TTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAGTGGAAATGGGTG  147
      | ||     |||||     || || |  ||||  | | ||| | | ||||
seq2  TAAT---GGCCAGT----CGGGACACATGGGCTCATATTGGCAGT-GGTG  130

seq1  GGTAGGGGAATGGAGGGGGGGTATGGGGGACTTTTGGGATAGCATTGGAA  197
                                                        
seq2  --------------------------------------------------  130

seq1  ATGTAATTGAGGAAAATACATAATAAAAATATTTTTTAAAAATTATCTAC  247
                                                        
seq2  --------------------------------------------------  130

seq1  TTATAGAAAAGGCAAAATAAATTTAAAAACTGCTTCATATTCAAAGGCTG  297
                                                        
seq2  --------------------------------------------------  130

seq1  GTTTTTATTTTGTCACCTGATATTTCTCTTGGAGAATCGCTTCCAGATAT  347
                                                        
seq2  --------------------------------------------------  130

seq1  GTTTATAACATTTTCCCTTATCAAACAACTCAGAGCCTCAGGGGTGTAAG  397
                                                        
seq2  --------------------------------------------------  130

seq1  AAAGTACTCTACCACTGAGCTACCTCCCCGGCTGCCACAGGCAATTTCAA  447
                                                        
seq2  --------------------------------------------------  130

seq1  ATGTTTATTTCTGTCCATACATTGTGATAGGAGAATAATCATCTCCAAAT  497
                                                        
seq2  --------------------------------------------------  130

seq1  TTACATATTGGCAGTGGTG  516
                         
seq2  -------------------  130