BAC Information

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BAC

Clone NameB6Ng01-143C24
Chromosome1 (Build37)
Map Location 134,313,817 - 134,458,828
singlet/doubletdoublet
Overlap geneRipk5, Rbbp5, Tmem81, Cntn2
Upstream geneSrgap2, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4, Pctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2
Downstream geneNfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b, Ppp1r15b, Plekha6, Golt1a, Kiss1, LOC100038824, Ren1, Etnk2, Sox13, LOC667371
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143C24.bB6Ng01-143C24.g
ACCDH941190DH941191
length8981,098
definitionDH941190|Mus musculus domesticus DNA, BAC clone: B6Ng01-143C24, 5' end.DH941191|Mus musculus domesticus DNA, BAC clone: B6Ng01-143C24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,313,817 - 134,314,722)(134,457,738 - 134,458,828)
sequence
tgtacagtgcaagaacaccttttaaacgagaagagtgtaagcacagggat
cagtagggtccacccgctagcttgcttccctgtgggcgttgtggcattcc
acccagcccagactacaagtcccaggagcccgcgcagcgacggtgcctct
gtgagctcgtccctggctccgctggggagcggagtaaggttctggccgga
gccaggcgctctggctgctcagccgcggcagtgacggaggctggaggccg
cgcggagcgccggcaggggcgtcgggaggcggattccgccttctctgagc
gctagggggcgggaggagggggccgggccagcggctcagccagccgcgaa
gacagctggctgagcgatggaggccgacgggcagtcatgggccggcgagt
ccgtgtcgggcccgggtcccggaggcggcggaatgatccgcgagctgtgc
cggggcttcagccgctaccgccgctacctgggacggctgcggcagaacct
gcgagagacccagaagttcttccgcgacatcaagtgctcccacagccaca
gttgtccctcctcccccgcgggcggcggagcggccgagcttggccctgcc
ggcgacgtcgccgaagccccgctgccggcgggtaaggacaggcccgatgg
agagaggaaaatcggagggtggcatctccgtcagcaaacaactccaggag
gaggcggccagtagagagggccgcggggcggcgcgaggcctggcctcggg
atcttagatgaggtgggaggataccctggggagaggtggcaagggctcga
gatcgggaaggcagaattcggaaaggctagcgggagagtgagaagtgctt
tgatgggggtgcttggatggggaccgagtccccgggtaggggttaggt
gaattcactgcaataaactcaagaaggcatcctgactgtaaagagccagc
aacagccagaacatggggtgatttcactctcagacaaagattcccagtac
ggatttaaaagcacctagagtcgactgggagctgacaaatggcaagtgtg
ggacgagggaggtgggtgatagagtcctgattaatacaagggagattgga
ggcttctaggcagtctggaggaatcattggagtagttgagacaggcaggg
gaaggatcagagcaatgctgtctacctacgtgtggttctccacccagcta
taccagactctcttggaagtgggagctagtaaaaattcccaggtctagta
tctgagctctggtgcttgctatgagaactttccccatgtccctgtgcagg
tgatactggctgctgcttgagggaacaggaagagggagaagccaccacct
cttgtgccctctgtatagtcaccctacttcagtcatgaatttgccctggg
tgagtagaaatttttagcaaaattggtgagttcaatatctggatagagag
gcaggttgagaatggggaatctgaattggagccctcaagagcaacccccc
aaaaaatgtgggcagggctttgactttctcaagcccttgcaacttgcagg
gaaattgagccacctataatacttgatggcataaaggcaaaagggcacca
gatggtcttttggggggacagtacagtcacagtaagagaaggggatgctg
ccagctacccaccgtgatgtgggctttatgtgaaaggtccctgttctttt
tgttttcttacagggctgggggatcaaaatcccaggccctcctcatgcta
ggcaaacactcttaaggctacatttggattaccaaaccctaaaaggtccc
atcccttttaactttccagcagccctgtgaagcagcagctttatcctttt
acaggctgaaaaaactgactccaaacagcagattatttgcacccaagttt
aggacaggccgaaagtagaagcaggcagcccactcacattcctgcctcca
agactaccttgggggcgtgaataggacatctacctgagagactttggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_134313817_134314722
seq2: B6Ng01-143C24.b_53_950

seq1  TGTACAGTGCAAGAACACCTTTTAAACGAGAAGAGTGTAAGCACAGGGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGTGCAAGAACACCTTTTAAACGAGAAGAGTGTAAGCACAGGGAT  50

seq1  CAGTAGGGTCCACCCGCTAGCTTGCTTCCCTGTGGGCGTTGTGGCATTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGGGTCCACCCGCTAGCTTGCTTCCCTGTGGGCGTTGTGGCATTCC  100

seq1  ACCCAGCCCAGACTACAAGTCCCAGGAGCCCGCGCAGCGACGGTGCCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCCCAGACTACAAGTCCCAGGAGCCCGCGCAGCGACGGTGCCTCT  150

seq1  GTGAGCTCGTCCCTGGCTCCGCTGGGGAGCGGAGTAAGGTTCTGGCCGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCTCGTCCCTGGCTCCGCTGGGGAGCGGAGTAAGGTTCTGGCCGGA  200

seq1  GCCAGGCGCTCTGGCTGCTCAGCCGCGGCAGTGACGGAGGCTGGAGGCCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCGCTCTGGCTGCTCAGCCGCGGCAGTGACGGAGGCTGGAGGCCG  250

seq1  CGCGGAGCGCCGGCAGGGGCGTCGGGAGGCGGATTCCGCCTTCTCTGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGGAGCGCCGGCAGGGGCGTCGGGAGGCGGATTCCGCCTTCTCTGAGC  300

seq1  GCTAGGGGGCGGGAGGAGGGGGCCGGGCCAGCGGCTCAGCCAGCCGCGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGGGGCGGGAGGAGGGGGCCGGGCCAGCGGCTCAGCCAGCCGCGAA  350

seq1  GACAGCTGGCTGAGCGATGGAGGCCGACGGGCAGTCATGGGCCGGCGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTGGCTGAGCGATGGAGGCCGACGGGCAGTCATGGGCCGGCGAGT  400

seq1  CCGTGTCGGGCCCGGGTCCCGGAGGCGGCGGAATGATCCGCGAGCTGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGTCGGGCCCGGGTCCCGGAGGCGGCGGAATGATCCGCGAGCTGTGC  450

seq1  CGGGGCTTCAGCCGCTACCGCCGCTACCTGGGACGGCTGCGGCAGAACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGCTTCAGCCGCTACCGCCGCTACCTGGGACGGCTGCGGCAGAACCT  500

seq1  GCGAGAGACCCAGAAGTTCTTCCGCGACATCAAGTGCTCCCACAGCCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGAGACCCAGAAGTTCTTCCGCGACATCAAGTGCTCCCACAGCCACA  550

seq1  GTTGTCCCTCCTCCCCCGCGGGCGGCGGAGCGGCCGAGCTTGGCCCTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCCCTCCTCCCCCGCGGGCGGCGGAGCGGCCGAGCTTGGCCCTGCC  600

seq1  GGCGACGTCGCCGAAGCCCCGCTGCCGGCGGGTAAGGACAGGCCCGATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGACGTCGCCGAAGCCCCGCTGCCGGCGGGTAAGGACAGGCCCGATGG  650

seq1  AGAGAGGAAAATCGGAGGGTGGCATCTCCGTCAGCAAAACAACTCCAGGA  700
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGAGAGGAAAATCGGAGGGTGGCATCTCCGTCAGC-AAACAACTCCAGGA  699

seq1  GGAGGCGGCCAGTAGGAGAGGGCCGCGGGGCGGCGCGAGGCCTGGGCCTC  750
      |||||||||||||| |||||||||||||||||||||||||||| ||||||
seq2  GGAGGCGGCCAGTA-GAGAGGGCCGCGGGGCGGCGCGAGGCCT-GGCCTC  747

seq1  GGGGATCTTAGATGAGGTGGGAGGATACCCTGGGGAGAGGTGGCAAGGGC  800
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GGGATCTTAGATGAGGTGGGAGGATACCCTGGGGAGAGGTGGCAAGGGC  796

seq1  TCGAGACCGGG-AGGCAGAATTCGAAAAGGCTAAGCGGAGAGGTGAGAAA  849
      |||||| |||| |||||||||||| ||||||||   ||||| ||||||| 
seq2  TCGAGATCGGGAAGGCAGAATTCGGAAAGGCTAGCGGGAGA-GTGAGAA-  844

seq1  GTTGCTTTGAATTGGGGTGCTTGGTATGGGGACCGAGTCCCCGGTTAGGT  899
        ||||||| || ||||||||||| ||||||||||||||||||| |||| 
seq2  -GTGCTTTG-ATGGGGGTGCTTGG-ATGGGGACCGAGTCCCCGGGTAGGG  891

seq1  GTTAGGT  906
      |||||||
seq2  GTTAGGT  898

seq1: chr1_134457738_134458828
seq2: B6Ng01-143C24.g_65_1162 (reverse)

seq1  ACCAAAGTCTTCACAGCTGAGATGTTC-ATTCACGCCCCAAGTGTAGTCT  49
      ||||||||| || ||| | |||||| | ||||||||||| |  |||||||
seq2  ACCAAAGTC-TCTCAGGT-AGATGTCCTATTCACGCCCCCAAGGTAGTCT  48

seq1  TGGAAGCAGGGTATGTGAGTGGGCTGGCCTGGCTCCTACTTCCGGCACTG  99
      |||| ||| || ||||||||||||| |||| ||| |||||| |||| |||
seq2  TGGAGGCA-GGAATGTGAGTGGGCT-GCCT-GCTTCTACTTTCGGC-CTG  94

seq1  TCCCTTACCTTGGGTGC-AATATCTTGCTGTTTGGAGTCAGTTTTCTCAG  148
      | ||| | ||||||||| ||||   |||||||||||||||||||| ||||
seq2  T-CCTAAACTTGGGTGCAAATAATCTGCTGTTTGGAGTCAGTTTTTTCAG  143

seq1  CCTGTAACAGGATATAGCTGCCTGCTTCACAGGGCTGCTGGAAAGTTAAA  198
      ||||||| |||||| ||||| |||||||||||||||||||||||||||||
seq2  CCTGTAAAAGGATAAAGCTG-CTGCTTCACAGGGCTGCTGGAAAGTTAAA  192

seq1  AGGGAT-GGACCTTTTAGGG-TTGGTGATAC-AATGTAGCCTT-AGAGTG  244
      |||||| ||||||||||||| ||||| || | ||||||||||| ||||||
seq2  AGGGATGGGACCTTTTAGGGTTTGGTAATCCAAATGTAGCCTTAAGAGTG  242

seq1  TTTGCCTAGCATGTGGAGGGCCT-GGATTTTGAT-CCCCAGCCCTGTAAG  292
      ||||||||||||| ||||||||| |||||||||| |||||||||||||||
seq2  TTTGCCTAGCATGAGGAGGGCCTGGGATTTTGATCCCCCAGCCCTGTAAG  292

seq1  AAAAC-AAAAGAACAGGGACCTTTCACATAAAGCCCACATCACGGT-GGT  340
      ||||| |||||||||||||||||||||||||||||||||||||||| |||
seq2  AAAACAAAAAGAACAGGGACCTTTCACATAAAGCCCACATCACGGTGGGT  342

seq1  AGCTGGCAGCATCCCCTTCTCTTACTGTGACTGTACTGTCCCCC--AAAG  388
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  AGCTGGCAGCATCCCCTTCTCTTACTGTGACTGTACTGTCCCCCCAAAAG  392

seq1  ACCATCTGGTGCCCTTTTGCCTTTATGCCATC-AGTATTATAGGTGGCTC  437
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACCATCTGGTGCCCTTTTGCCTTTATGCCATCAAGTATTATAGGTGGCTC  442

seq1  AA-TTCCCTGCAAGTTGCAA-GGCTTGAGAAAGTCAAAGCCCTGCCCACA  485
      || ||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AATTTCCCTGCAAGTTGCAAGGGCTTGAGAAAGTCAAAGCCCTGCCCACA  492

seq1  TTTTTTGGGGGGTTGCTCTTGAGGGCTCCAATTCAGATTCCCCATTCTCA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGGGGGGTTGCTCTTGAGGGCTCCAATTCAGATTCCCCATTCTCA  542

seq1  ACCTGCCTCTCTATCCAGATATTGAACTCACCAATTTTGCTAAAAATTTC  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCCTCTCTATCCAGATATTGAACTCACCAATTTTGCTAAAAATTTC  592

seq1  TACTCACCCAGGGCAAATTCATGACTGAAGTAGGGTGACTATACAGAGGG  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCACCCAGGGCAAATTCATGACTGAAGTAGGGTGACTATACAGAGGG  642

seq1  CACAAGAGGTGGTGGCTTCTCCCTCTTCCTGTTCCCTCAAGCAGCAGCCA  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAGGTGGTGGCTTCTCCCTCTTCCTGTTCCCTCAAGCAGCAGCCA  692

seq1  GTATCACCTGCACAGGGACATGGGGAAAGTTCTCATAGCAAGCACCAGAG  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCACCTGCACAGGGACATGGGGAAAGTTCTCATAGCAAGCACCAGAG  742

seq1  CTCAGATACTAGACCTGGGAATTTTTACTAGCTCCCACTTCCAAGAGAGT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGATACTAGACCTGGGAATTTTTACTAGCTCCCACTTCCAAGAGAGT  792

seq1  CTGGTATAGCTGGGTGGAGAACCACACGTAGGTAGACAGCATTGCTCTGA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTATAGCTGGGTGGAGAACCACACGTAGGTAGACAGCATTGCTCTGA  842

seq1  TCCTTCCCCTGCCTGTCTCAACTACTCCAATGATTCCTCCAGACTGCCTA  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCCCTGCCTGTCTCAACTACTCCAATGATTCCTCCAGACTGCCTA  892

seq1  GAAGCCTCCAATCTCCCTTGTATTAATCAGGACTCTATCACCCACCTCCC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTCCAATCTCCCTTGTATTAATCAGGACTCTATCACCCACCTCCC  942

seq1  TCGTCCCACACTTGCCATTTGTCAGCTCCCAGTCGACTCTAGGTGCTTTT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCCCACACTTGCCATTTGTCAGCTCCCAGTCGACTCTAGGTGCTTTT  992

seq1  AAATCCGTACTGGGAATCTTTGTCTGAGAGTGAAATCACCCCATGTTCTG  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCGTACTGGGAATCTTTGTCTGAGAGTGAAATCACCCCATGTTCTG  1042

seq1  GCTGTTGCTGGCTCTTTACAGTCAGGATGCCTTCTTGAGTTTATTGCAGT  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGCTGGCTCTTTACAGTCAGGATGCCTTCTTGAGTTTATTGCAGT  1092

seq1  GAATTC  1091
      ||||||
seq2  GAATTC  1098