BAC Information

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BAC

Clone NameB6Ng01-143D20
Chromosome1 (Build37)
Map Location 113,314,393 - 113,315,577
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041429, EG626652, Cdh19
Downstream geneEG666578, Dsel, LOC547247, EG626897, LOC666615
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143D20.bB6Ng01-143D20.g
ACCDH941230DH941231
length1,1621,202
definitionDH941230|Mus musculus domesticus DNA, BAC clone: B6Ng01-143D20, 5' end.DH941231|Mus musculus domesticus DNA, BAC clone: B6Ng01-143D20, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattgtatttttaaggatattatgaatgggattttcccttcattt
ctttttcaatgatttttgttaatgttgttattgttgtggttgttcttgtt
gttatctctatataggacagctacaacaaaatgcacacctgaacatgatg
cagtgagtatgagacttcatcgtgctcaaccacaaatcggcatttgtttc
tcacacttcacattcaaagctaaaacgtacttcatgagaaatggacaaaa
gattaaaacatccatacgtgataaaatatttcaggaaatgttatgttgag
gaaaaaactaggtagttgcacagataaagccattagtgttcttatagtat
gtacaagacttgattcaatcaaggtatgtaatggtgtgtggagaaaaatt
tccactagtagtttgggacttactatcatttaacagctgcagaagagtaa
gattaggatttcttaaagagtgttatgctgaatatgtcaagcatgatcca
ggagaatattcaatatctacagttttgggaaaaggagaacagaaacagaa
gagaaggcatgctgaaaaatacaaactgcttggaacactgaaagtaattt
tttgttgttattgctaatacatatttttctctgttaggggctgcaaactg
gacattacacactgcagaaaagaatcttgcaacagagctttaatcagatt
cccttcagcttacatttctgagggtaattttcaaattactatactaccaa
tgaaaatgtatagagggctaatatccaaaacatataaagaatacaagaag
ctaaccaaaaaatcataaacccaatttaaaaatgtggttagaactaaact
gagaatgcacaacaaaagaatctgcagtggctgaaagcacctaaagaaat
gttcgaagtacttagtgtttcagagaaatgcaaatcaaactaattacttt
gagatcactttgtatcatcagaatgactagatcaaaatttcagttacaca
tgtagctaggatgtgagaaaaaggaaactctcattgctgtaggattgcaa
gctggtacaccactctggaaatcatcttggaaatccgtcataaaatggat
taatcttacagaagacctcaccaataccctctgggaatacactaagattg
tgccacttacca
gaattcagtagagttccctttacttctattttctggaatagtttgtgaag
aactggaattagatcttctttgaaggtctgttagaactctgcactaaacc
catcttgtcctgggaatttttttttttttttttggttgggacactattaa
tgactgcttctatttctttaggggatgtaggactgttcagatcaggaacc
tgatactgatttaactttggtacctggtatctgtctagaaatttgtccat
ttcaaccaggttctcccattttgttgagtatagccttttgtagaaggatc
tgatggtgttttggttttctgcaggatctgtttttatgtctcccatttga
tttctgattttgttaattaggatgctgtccctgtgcactttagtgagtct
ggttagtgtttatttatcttgttaattttctcaaagaaccagctcctctt
tggttgattctttgaatagttcttcatgtttccacttggttgattttgcc
cctaagattgattatttcctgctgtctgctactcttgcatgaatttgctt
ccttttgtattagagcttttaggtgtgttgtcaagctgctagtgtgtgct
ctctctagtttctttttggaggcactcagagctatgaattttcctcttag
aaatgctttcattgtgtcccataagtttgggtatgttgcagcttcatttt
cattaaactctaaaaagtccttcattttttttctttattcttttccttga
ccaaagtatcattgagaagagtgttgttcagttccaagtagatgttggct
tttttattattttatgttgttattggagatcagccatagtccatggtgat
ctgagaggatgcatgggacaatttcaatatttttatacctgtgacacctg
ttttgtgaccattatatggtcattttgggaaagtaccatgagttgctgga
gagaggtatatccttttgtttaggataatgttcttagatttcgtagattc
attggtccatacctttgtaagttcactgtgccctgtagtccgttccatga
cgccatggggaatggtgggtgaaatcctccatattatgtgtgaagcccct
cttgggtctgtgatctaccaggttctttattaagtgtggtccctggtatg
tgcaggatcgaagtaagtcctgtagataattggtagaatactgtgagctc
tc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_113314393_113315577
seq2: B6Ng01-143D20.b_45_1206

seq1  GAATTCATTGTATTTTTAAGGATATTATGAATGGGATTTTCCCTTCATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTATTTTTAAGGATATTATGAATGGGATTTTCCCTTCATTT  50

seq1  CTTTTTCAATGATTTTTGTTAATGTTGTTATTGTTGTGGTTGTTCTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCAATGATTTTTGTTAATGTTGTTATTGTTGTGGTTGTTCTTGTT  100

seq1  GTTATCTCTATATAGGACAGCTACAACAAAATGCACACCTGAACATGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCTCTATATAGGACAGCTACAACAAAATGCACACCTGAACATGATG  150

seq1  CAGTGAGTATGAGACTTCATCGTGCTCAACCACAAATCGGCATTTGTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGTATGAGACTTCATCGTGCTCAACCACAAATCGGCATTTGTTTC  200

seq1  TCACACTTCACATTCAAAGCTAAAACGTACTTCATGAGAAATGGACAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTTCACATTCAAAGCTAAAACGTACTTCATGAGAAATGGACAAAA  250

seq1  GATTAAAACATCCATACGTGATAAAATATTTCAGGAAATGTTATGTTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAACATCCATACGTGATAAAATATTTCAGGAAATGTTATGTTGAG  300

seq1  GAAAAAACTAGGTAGTTGCACAGATAAAGCCATTAGTGTTCTTATAGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAACTAGGTAGTTGCACAGATAAAGCCATTAGTGTTCTTATAGTAT  350

seq1  GTACAAGACTTGATTCAATCAAGGTATGTAATGGTGTGTGGAGAAAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAGACTTGATTCAATCAAGGTATGTAATGGTGTGTGGAGAAAAATT  400

seq1  TCCACTAGTAGTTTGGGACTTACTATCATTTAACAGCTGCAGAAGAGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTAGTAGTTTGGGACTTACTATCATTTAACAGCTGCAGAAGAGTAA  450

seq1  GATTAGGATTTCTTAAAGAGTGTTATGCTGAATATGTCAAGCATGATCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGGATTTCTTAAAGAGTGTTATGCTGAATATGTCAAGCATGATCCA  500

seq1  GGAGAATATTCAATATCTACAGTTTTGGGAAAAGGAGAACAGAAACAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATATTCAATATCTACAGTTTTGGGAAAAGGAGAACAGAAACAGAA  550

seq1  GAGAAGGCATGCTGAAAAATACAAACTGCTTGGAACACTGAAAGTAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGGCATGCTGAAAAATACAAACTGCTTGGAACACTGAAAGTAATTT  600

seq1  TTTGTTGTTATTGCTAATACATATTTTTCTCTGTTAGGGGCTGCAAACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGTTATTGCTAATACATATTTTTCTCTGTTAGGGGCTGCAAACTG  650

seq1  GACATTACACACTGCAGAAAAGAATCTTGCAACAGAGCTTTAATCAGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTACACACTGCAGAAAAGAATCTTGCAACAGAGCTTTAATCAGATT  700

seq1  CCCTTCAGCTTACATTTCTGAGGGTAATTTTCAAATTACTATACTACCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCAGCTTACATTTCTGAGGGTAATTTTCAAATTACTATACTACCAA  750

seq1  TGAAAATGTATAGAGGGCTAATATCCAAAACATATAAAGAATACAAGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATGTATAGAGGGCTAATATCCAAAACATATAAAGAATACAAGAAG  800

seq1  CTAACCAAAAAATCATAAACCCAATTTAAAAAATGTGGTTTAGAACTAAA  850
      ||||||||||||||||||||||||||| |||||||||| |||||||||||
seq2  CTAACCAAAAAATCATAAACCCAATTT-AAAAATGTGG-TTAGAACTAAA  848

seq1  CTGAGAATGCACAACAAAAGAATCTGCAGTGGCTGAGAAGCACCTAAAGA  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTGAGAATGCACAACAAAAGAATCTGCAGTGGCTGA-AAGCACCTAAAGA  897

seq1  AATGTTCGAAGTACTTAGTG-TTCAGAGAAATGCAAATCAAAACTAATTA  949
      |||||||||||||||||||| |||||||||||||||||| ||||||||||
seq2  AATGTTCGAAGTACTTAGTGTTTCAGAGAAATGCAAATC-AAACTAATTA  946

seq1  CTTTGAGATTCCACTTTGTATCAATCAGAATGACTAAGATCAAAATTTCA  999
      |||||||||  ||||||||||| |||||||||||| ||||||||||||||
seq2  CTTTGAGAT--CACTTTGTATC-ATCAGAATGACT-AGATCAAAATTTCA  992

seq1  GGTTACAACATGTTAGCTAGGATGTGGAGAAAAAGGAAAACTCCTCCATT  1049
       ||||| ||||| |||||||||||| |||||||||| ||||||   ||||
seq2  -GTTAC-ACATG-TAGCTAGGATGT-GAGAAAAAGG-AAACTC--TCATT  1035

seq1  GCTGGTAGGATTGCAAGCTGGTACAACAACTCTGGAAATCAATCTGGAGA  1099
      ||| |||||||||||||||||||| || |||||||||||||   |||| |
seq2  GCT-GTAGGATTGCAAGCTGGTAC-ACCACTCTGGAAATCATCTTGGAAA  1083

seq1  TTCGTCATAAAATTGGAAATAAATCTACCAGAAGACC-CAACAATACCCC  1148
      | ||||||||||| |   || |||||  ||||||||| || ||||| |||
seq2  TCCGTCATAAAATGG---ATTAATCTTACAGAAGACCTCACCAATA-CCC  1129

seq1  TCTTGGGAATACACCTAAAAGATGTGCCACCATACCA  1185
      || |||||||||| |||| |  ||||||| | |||||
seq2  TC-TGGGAATACA-CTAAGA-TTGTGCCA-CTTACCA  1162