BAC Information

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BAC

Clone NameB6Ng01-143I12
Chromosome1 (Build37)
Map Location 156,807,491 - 156,998,058
singlet/doubletdoublet
Overlap geneLOC671336, Ier5, Mr1
Upstream geneLOC100043359, Cacna1e
Downstream geneStx6, EG667867, BC034090, Xpr1, EG433367, Acbd6, Lhx4, Qscn6, Cep350, LOC676894, Tor1aip1, Ifrg15, Tor1aip2, A230106N23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143I12.bB6Ng01-143I12.g
ACCDH941443DH941444
length1,1121,171
definitionDH941443|Mus musculus domesticus DNA, BAC clone: B6Ng01-143I12, 5' end.DH941444|Mus musculus domesticus DNA, BAC clone: B6Ng01-143I12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(156,996,925 - 156,998,058)(156,807,491 - 156,808,665)
sequence
gaattctcccacacctaactcctagaattcctatctctgccagaaatcat
gcctattctctcctccttcgctagaggccatcagctttttgttgagccgt
gatgcttttccacagtgcacaataatattatccaaacaagcaaattaaga
accaatttgattcaaagaactcacataaagatggaaagaaaaccaaccac
acaaagttgtcctctgacctctacaggtacacaaggcacgggcacccgcg
ctcacatgctcacaaacacaatcacaataaatacaatttttaaattgtgt
aaagaaaacaaatctccatcctgattgaaccttaagaagcagtaaagtta
catcattaaatatgtatatcaatgccgagaaatagaaatttgaaaagaaa
cttacaaaacagaattagaacaagtaaaataagttccttaaggaggaggt
gagaggtaaatacagaataaggtgtcttagttagggttttattgctgtga
agagaaacaatgtccatgaccactcttataaagaaaaatatctaattggg
gctggctttcagcttcagaagtttagtctgttatcatcatggcaggaagc
atggcagcatgtcagcaaacgtggtgctggagaggtagctgagaggtcta
catctgtggcagcaggcagcaggaagagagagtgacactgggactggctt
gagcatctgaaacctcaaagcccacccacagtgacacccccccttcacaa
agccacctctactccaataaggctacatgccctaattctttcaaatagtg
caactccttatgagctacaaaggccatttcattcaaatcaccaaagagga
taaagggaattttcagatacaattaaaatgataggaggaaggcaagggag
gtaaactcagaagagggctgtctggaaagtcttaatccttcatcaggaga
actcttctttgcagtgatggagaccgttacaggaaaaccacaccatcaaa
taagactatgagcctagcctgataggtacatctataacactcccacatct
atctcaagaacattgcagagaaggcagacgatgttaagagcatgaggtca
gggattgctatg
gaattctcactaagttcactacttatcacatgccttcctccgaagcatag
gccagacgcaagatatctgttcaccatttctcagcaccaagaacagaccc
tgagatacagcaagtggcaaagtccgttgttgggcaaatgaatgaatgaa
tgaatacattatgaacagcattattattgtaccctcagcatccgctcaca
ctaaggaagcagagttaagccttctttggccaccaagtttagagggcaga
ggacagttgtggaggcatttgactccagagcccctgctgtttagctacca
tattctgctgtgaagccactctaccaggccacttctgtctgccaagagcc
ctctaggggaacttcaggaaagactgactattccaggcaagggaccagag
acagcacttcctacctaccacaaagtgcaagttctggagtagagaactga
caatcaataaactaatgggaataacagggaaaaacctaaaattttttgtc
tatgtaaaaataatgctaattacagtagtttgtgggaactgcttactgtt
cttgcctaattatcggtcagcacaacaatttaaccaatgtcaacctacct
ttgttatgagttttatttgattgcaaccgcaaaagctaaaagcaaaaggg
taagtccaacaatgagctggctgcacagagactggccccctgcccagaat
ttaaaattagcaatcatctcccagcccttaaactctctgcctgtataatt
aatgatcttccaggtatagggttttacctgttccagaagcacctccatgc
aggacctatcaggctttgtccagtagtattgcacactcagccctaagcag
acctagcagcctttgccagtgttcattcactgatgctcgcttgaaggatg
ggtcctattcatctacgttggatacactcatgttgcttctgaggatgctg
gaaacccattagttttttaaaatgtcaggtgtaagttgtcacttctgcac
caatattgtaacattgggccatgcccagaatcttcttggagcttatagca
ggctttcagaaaaggtcagatagagaaggatgcttgggcggcctcaagcc
tgaatatatccgcaggaatatatggagagaatgggctggctttctccaag
tatacagccttccttgggagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_156996925_156998058
seq2: B6Ng01-143I12.b_41_1152 (reverse)

seq1  CATAGCAAACTCCCTGACCATCATGCTCTTAACATCGTTCTGCCCTCTCT  50
      ||||||||  ||||||||| ||||||||||||||||| |||||| ||   
seq2  CATAGCAA--TCCCTGACC-TCATGCTCTTAACATCG-TCTGCCTTC---  43

seq1  TCTGCAATGTTCTCTGAGAATTAGATGTGGGAGTGTTTATAGATGTACCT  100
      ||||||||||||| |||||  |||||||||||||| ||||||||||||||
seq2  TCTGCAATGTTCT-TGAGA--TAGATGTGGGAGTG-TTATAGATGTACCT  89

seq1  ATCAAGGCTAGGCTTCATAGTTCTATATTTTGATTGGTTGTGGTTTT-CT  149
      ||| ||||||||| |||||||  ||   ||||||  | ||||||||| ||
seq2  ATC-AGGCTAGGC-TCATAGTCTTA---TTTGAT--GGTGTGGTTTTCCT  132

seq1  GTAACGGTCTCCATCCACTGCAAAGAAGAGTTCTCTTGATGAAGGATTAA  199
      |||||||||||||| |||||||||||||||||||| ||||||||||||||
seq2  GTAACGGTCTCCAT-CACTGCAAAGAAGAGTTCTCCTGATGAAGGATTAA  181

seq1  GACTTTCCAGACAGCCCTCCTTCTGAGTTTACCTCCCTTGCCTTCCTTCC  249
      |||||||||||||||||| ||||||||||||||||||||||||||| |||
seq2  GACTTTCCAGACAGCCCT-CTTCTGAGTTTACCTCCCTTGCCTTCC-TCC  229

seq1  TATCATTTTAATTGTATCCTGAAATTTCCCTTTATCCTCTTTGGTGATTT  299
      ||||||||||||||||| |||||| |||||||||||||||||||||||||
seq2  TATCATTTTAATTGTAT-CTGAAAATTCCCTTTATCCTCTTTGGTGATTT  278

seq1  GAATGAAAATGGCCTTTGTAGCTCATAAGGAGTTGCACTATTTGAAAGAA  349
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATG-AAATGGCCTTTGTAGCTCATAAGGAGTTGCACTATTTGAAAGAA  327

seq1  TTAGGGCATGTAGCCTTATTGGAGTAGAGGTGGCTTTGTGAAGGGGGGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGCATGTAGCCTTATTGGAGTAGAGGTGGCTTTGTGAAGGGGGGGT  377

seq1  GTCACTGTGGGTGGGCTTTGAGGTTTCAGATGCTCAAGCCAGTCCCAGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGTGGGTGGGCTTTGAGGTTTCAGATGCTCAAGCCAGTCCCAGTG  427

seq1  TCACTCTCTCTTCCTGCTGCCTGCTGCCACAGATGTAGACCTCTCAGCTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTCTCTTCCTGCTGCCTGCTGCCACAGATGTAGACCTCTCAGCTA  477

seq1  CCTCTCCAGCACCACGTTTGCTGACATGCTGCCATGCTTCCTGCCATGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCAGCACCACGTTTGCTGACATGCTGCCATGCTTCCTGCCATGAT  527

seq1  GATAACAGACTAAACTTCTGAAGCTGAAAGCCAGCCCCAATTAGATATTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACAGACTAAACTTCTGAAGCTGAAAGCCAGCCCCAATTAGATATTT  577

seq1  TTCTTTATAAGAGTGGTCATGGACATTGTTTCTCTTCACAGCAATAAAAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATAAGAGTGGTCATGGACATTGTTTCTCTTCACAGCAATAAAAC  627

seq1  CCTAACTAAGACACCTTATTCTGTATTTACCTCTCACCTCCTCCTTAAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTAAGACACCTTATTCTGTATTTACCTCTCACCTCCTCCTTAAGG  677

seq1  AACTTATTTTACTTGTTCTAATTCTGTTTTGTAAGTTTCTTTTCAAATTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTATTTTACTTGTTCTAATTCTGTTTTGTAAGTTTCTTTTCAAATTT  727

seq1  CTATTTCTCGGCATTGATATACATATTTAATGATGTAACTTTACTGCTTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTCTCGGCATTGATATACATATTTAATGATGTAACTTTACTGCTTC  777

seq1  TTAAGGTTCAATCAGGATGGAGATTTGTTTTCTTTACACAATTTAAAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGTTCAATCAGGATGGAGATTTGTTTTCTTTACACAATTTAAAAAT  827

seq1  TGTATTTATTGTGATTGTGTTTGTGAGCATGTGAGCGCGGGTGCCCGTGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTATTGTGATTGTGTTTGTGAGCATGTGAGCGCGGGTGCCCGTGC  877

seq1  CTTGTGTACCTGTAGAGGTCAGAGGACAACTTTGTGTGGTTGGTTTTCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTACCTGTAGAGGTCAGAGGACAACTTTGTGTGGTTGGTTTTCTT  927

seq1  TCCATCTTTATGTGAGTTCTTTGAATCAAATTGGTTCTTAATTTGCTTGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTTTATGTGAGTTCTTTGAATCAAATTGGTTCTTAATTTGCTTGT  977

seq1  TTGGATAATATTATTGTGCACTGTGGAAAAGCATCACGGCTCAACAAAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATAATATTATTGTGCACTGTGGAAAAGCATCACGGCTCAACAAAAA  1027

seq1  GCTGATGGCCTCTAGCGAAGGAGGAGAGAATAGGCATGATTTCTGGCAGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGGCCTCTAGCGAAGGAGGAGAGAATAGGCATGATTTCTGGCAGA  1077

seq1  GATAGGAATTCTAGGAGTTAGGTGTGGGAGAATTC  1134
      |||||||||||||||||||||||||||||||||||
seq2  GATAGGAATTCTAGGAGTTAGGTGTGGGAGAATTC  1112

seq1: chr1_156807491_156808665
seq2: B6Ng01-143I12.g_67_1237

seq1  GAATTCTCACTAAGTTCACTACTTATCACATGCCTTCCTCCGAAGCATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACTAAGTTCACTACTTATCACATGCCTTCCTCCGAAGCATAG  50

seq1  GCCAGACGCAAGATATCTGTTCACCATTTCTCAGCACCAAGAACAGACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGACGCAAGATATCTGTTCACCATTTCTCAGCACCAAGAACAGACCC  100

seq1  TGAGATACAGCAAGTGGCAAAGTCCGTTGTTGGGCAAATGAATGAATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATACAGCAAGTGGCAAAGTCCGTTGTTGGGCAAATGAATGAATGAA  150

seq1  TGAATACATTATGAACAGCATTATTATTGTACCCTCAGCATCCGCTCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATACATTATGAACAGCATTATTATTGTACCCTCAGCATCCGCTCACA  200

seq1  CTAAGGAAGCAGAGTTAAGCCTTCTTTGGCCACCAAGTTTAGAGGGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGAAGCAGAGTTAAGCCTTCTTTGGCCACCAAGTTTAGAGGGCAGA  250

seq1  GGACAGTTGTGGAGGCATTTGACTCCAGAGCCCCTGCTGTTTAGCTACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTTGTGGAGGCATTTGACTCCAGAGCCCCTGCTGTTTAGCTACCA  300

seq1  TATTCTGCTGTGAAGCCACTCTACCAGGCCACTTCTGTCTGCCAAGAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGCTGTGAAGCCACTCTACCAGGCCACTTCTGTCTGCCAAGAGCC  350

seq1  CTCTAGGGGAACTTCAGGAAAGACTGACTATTCCAGGCAAGGGACCAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGGGAACTTCAGGAAAGACTGACTATTCCAGGCAAGGGACCAGAG  400

seq1  ACAGCACTTCCTACCTACCACAAAGTGCAAGTTCTGGAGTAGAGAACTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACTTCCTACCTACCACAAAGTGCAAGTTCTGGAGTAGAGAACTGA  450

seq1  CAATCAATAAACTAATGGGAATAACAGGGAAAAACCTAAAATTTTTTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAATAAACTAATGGGAATAACAGGGAAAAACCTAAAATTTTTTGTC  500

seq1  TATGTAAAAATAATGCTAATTACAGTAGTTTGTGGGAACTGCTTACTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAAAATAATGCTAATTACAGTAGTTTGTGGGAACTGCTTACTGTT  550

seq1  CTTGCCTAATTATCGGTCAGCACAACAATTTAACCAATGTCAACCTACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTAATTATCGGTCAGCACAACAATTTAACCAATGTCAACCTACCT  600

seq1  TTGTTATGAGTTTTATTTGATTGCAACCGCAAAAGCTAAAAGCAAAA-GG  649
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTGTTATGAGTTTTATTTGATTGCAACCGCAAAAGCTAAAAGCAAAAGGG  650

seq1  TAAGTCCAACAATGAGCTGGCTGCACAGAGACTGGCCCCCTGCCCAGAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCCAACAATGAGCTGGCTGCACAGAGACTGGCCCCCTGCCCAGAAT  700

seq1  TTAAAATTAGCAATCATCTCCCAGCCCTTAAACTCTCTGCCTGTATAATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTAGCAATCATCTCCCAGCCCTTAAACTCTCTGCCTGTATAATT  750

seq1  AATGATCTTCCAGGTATAGGGTTTTACCTGTTCCAGAAGCACCTCCATGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCTTCCAGGTATAGGGTTTTACCTGTTCCAGAAGCACCTCCATGC  800

seq1  AGGACCTATCAGGCTTTTGTCCAGTAGTATTGCACACTCAGCCCTAAGCA  849
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGGACCTATCAGGC-TTTGTCCAGTAGTATTGCACACTCAGCCCTAAGCA  849

seq1  GACCTAGCAGCCTTTGCCAGTGTTCATTCACTGATGCTCGCTTGAAGGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTAGCAGCCTTTGCCAGTGTTCATTCACTGATGCTCGCTTGAAGGAT  899

seq1  -GGTCCTATTCATCTACGTTTGAATACACTCATGTTGC-TCTGAGGATGC  947
       ||||||||||||||||| ||| ||||||||||||||| |||||||||||
seq2  GGGTCCTATTCATCTACG-TTGGATACACTCATGTTGCTTCTGAGGATGC  948

seq1  TGGAAACCCATTAGTATTTTTAAAATGTCAGTTGT-AGGTGTCACTTCTG  996
      ||||||||||||||| ||||||||||||||| ||| || |||||||||||
seq2  TGGAAACCCATTAGT-TTTTTAAAATGTCAGGTGTAAGTTGTCACTTCTG  997

seq1  CACCAATTATTGTAACACTGGGCAATGCCCAGAATCTTCTTGGAGCCTTA  1046
      |||||| |||||||||| ||||| ||||||||||||||||||||| ||||
seq2  CACCAA-TATTGTAACATTGGGCCATGCCCAGAATCTTCTTGGAG-CTTA  1045

seq1  TAGCAGGCTTTCAGAAGAGGTCAGATGAAGAAGGGATGCTTGGGC-GCTT  1095
      |||||||||||||||| |||||||||  |||| |||||||||||| || |
seq2  TAGCAGGCTTTCAGAAAAGGTCAGATAGAGAA-GGATGCTTGGGCGGCCT  1094

seq1  CAAGCCTGAGTATTATCGTCAGG-ATATTATGAGAGAATGGGCTGGCTTT  1144
      ||||||||| || ||||  |||| ||||   |||||||||||||||||||
seq2  CAAGCCTGAATA-TATCCGCAGGAATATATGGAGAGAATGGGCTGGCTTT  1143

seq1  CTTCCCAGTAATCAAGCCTTCCTTTTGGAGT  1175
      | ||| ||| ||  |||||||| || |||||
seq2  C-TCCAAGT-ATACAGCCTTCC-TTGGGAGT  1171