BAC Information

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BAC

Clone NameB6Ng01-143N23
Chromosome1 (Build37)
Map Location 160,715,986 - 160,717,138
singlet/doubletsinglet
Overlap genePappa2
Upstream gene6430517E21Rik, Astn1
Downstream gene4930562F17Rik, EG240853, LOC664972, Rfwd2, EG620484, Tnr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-143N23.bB6Ng01-143N23.g
ACCDH941697DH941698
length1,1461,040
definitionDH941697|Mus musculus domesticus DNA, BAC clone: B6Ng01-143N23, 5' end.DH941698|Mus musculus domesticus DNA, BAC clone: B6Ng01-143N23, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaagtcaaagccacacacatttttctatttagcttcagttctcat
gtcaacagaaagcaaatatccccactgtcttgtgatcatgagcctggatt
gtacaatttcctgcatgaggccagtgtcaggtgacagtgactggtcagct
ggagggcgccattgcttcctccatcatgagtttgacaaatgtgagccccc
atctttcttccaaccaggttcctctcatacttagcacagtggggaggcct
ggttcaaactgcagcaaaccactaatcattataagactgtctaaactcca
tgtgtgatgcctgacctttgcttgtgacttttttgagggtatttccattt
tttttttaatgttcaactttaatgcatgacaaacacagcctttcttctct
gatcttaacataccatacacatgtatttaatccataacttgttgaattat
ttctactttgttttcagcatgatgtacctttgccttggttaagaccaggt
gatagaagatctttctagattaagaatttgctgcctcaagtttcattaaa
actgtttttgactaggtgatttcacgaaaccttctaaatttcactatctt
taaattctgacaaaatctaagcaagtgaaattcctccaagggttcacaaa
ctgttaagaaatcaattggcacaaactgaaacatttccatttctcaagcc
atgaccagcaatggtgtgcctgttctcctcccatgaccagcaatggtgtg
cctgttctcttcccatgatcatgaatatttcagctttttcctcaagcata
attgcagtttacctagcatatacatccactgtctcataatgtgaccctgc
tttccaaaggtttgttgtgttgaaaactccccctatgagtatttcagctt
tctcaggggagatggaaaaccaagctttaattaggcttaattgttctaat
ataagatctaactaagagggcaccaatgcccatcattctattagaagctt
ttaagatgttcatcaccactgtaataacaccaagtcaatgtttcctcttt
gggaatatgtacaaatgtaaaacaatgtaaaaggataatttcatttggtt
gttcttacatattataacacctggaaagataatggaaacaaacatt
gaaatatctttcattaattttcccagaaccaggaaaacaaaacaaaacaa
aacaaaacaaaacaaaacattcctcccccggaagcaagaatggttactat
aaaggaaactggtgacaacaggaggagattgtagggagagagcaatagtg
ttggtaggagctaaattagtgtagcagttatagatatgagagtggaagca
tctcaaaaacaaactaaaatacaactattatattttctagctatgtcact
cctgggcatatgcccaaaagactctaaacactaggagggtaattgcatat
catatttatagatgctttattcaaagagcaaggaaatgaaatggcctaga
tgttcattaatagatgaatgggtaacaaacattcaatatgtaacaataga
atttatttaccaataaagaaaaattaacttaggaaattggcaggaagatg
cttagaactggaaaacatactaagtgctgcatcccatgttcctagaggca
aatatcagatattctctgtgacaagcaggttctagcttctaaatgctaag
tggatgtatctaggtaggtataatttgtagataaaggccagaaaactaga
aagaggcccatgagacagaaaaggaaaaaaaggaagaaaacctttaaaaa
acaggcacgggaagacaatagaaccatgagatagatattaaaacagaagt
gaggacactggaggccgaagattatctctggcaaaggggtcaggcaagca
gatcagagggaggaaggggaagagacagaccaaagcaaggcaggcttaaa
tgccatgtggaattaaaataatttaaaaatgatctctttttataaggtgc
atataactccatagtatatattaatatattctttattcaatttaatgttc
tgaacaagcacacagatttactgtattgctactctgagcattgtaaaagc
atgaatgtcaagtggcttagtaattcataggaatgaaatatctagatcat
atgatgttctctcttggatgtttagtttcgaagaaattca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_160715986_160717138
seq2: B6Ng01-143N23.b_47_1192

seq1  GAATTCAAGTCAAAGCCACACACATTTTTCTATTTAGCTTCAGTTCTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTCAAAGCCACACACATTTTTCTATTTAGCTTCAGTTCTCAT  50

seq1  GTCAACAGAAAGCAAATATCCCCACTGTCTTGTGATCATGAGCCTGGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACAGAAAGCAAATATCCCCACTGTCTTGTGATCATGAGCCTGGATT  100

seq1  GTACAATTTCCTGCATGAGGCCAGTGTCAGGTGACAGTGACTGGTCAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAATTTCCTGCATGAGGCCAGTGTCAGGTGACAGTGACTGGTCAGCT  150

seq1  GGAGGGCGCCATTGCTTCCTCCATCATGAGTTTGACAAATGTGAGCCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGCGCCATTGCTTCCTCCATCATGAGTTTGACAAATGTGAGCCCCC  200

seq1  ATCTTTCTTCCAACCAGGTTCCTCTCATACTTAGCACAGTGGGGAGGCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCTTCCAACCAGGTTCCTCTCATACTTAGCACAGTGGGGAGGCCT  250

seq1  GGTTCAAACTGCAGCAAACCACTAATCATTATAAGACTGTCTAAACTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAAACTGCAGCAAACCACTAATCATTATAAGACTGTCTAAACTCCA  300

seq1  TGTGTGATGCCTGACCTTTGCTTGTGACTTTTTTGAGGGTATTTCCATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGATGCCTGACCTTTGCTTGTGACTTTTTTGAGGGTATTTCCATTT  350

seq1  TTTTTTTAATGTTCAACTTTAATGCATGACAAACACAGCCTTTCTTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTAATGTTCAACTTTAATGCATGACAAACACAGCCTTTCTTCTCT  400

seq1  GATCTTAACATACCATACACATGTATTTAATCCATAACTTGTTGAATTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTAACATACCATACACATGTATTTAATCCATAACTTGTTGAATTAT  450

seq1  TTCTACTTTGTTTTCAGCATGATGTACCTTTGCCTTGGTTAAGACCAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTTTGTTTTCAGCATGATGTACCTTTGCCTTGGTTAAGACCAGGT  500

seq1  GATAGAAGATCTTTCTAGATTAAGAATTTGCTGCCTCAAGTTTCATTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGAAGATCTTTCTAGATTAAGAATTTGCTGCCTCAAGTTTCATTAAA  550

seq1  ACTGTTTTTGACTAGGTGATTTCACGAAACCTTCTAAATTTCACTATCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTTTGACTAGGTGATTTCACGAAACCTTCTAAATTTCACTATCTT  600

seq1  TAAATTCTGACAAAATCTAAGCAAGTGAAATTCCTCCAAGGGTTCACAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTCTGACAAAATCTAAGCAAGTGAAATTCCTCCAAGGGTTCACAAA  650

seq1  CTGTTAAGAAATCAATTGGCACAAACTGAAACATTTCCATTTCTCAAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAAGAAATCAATTGGCACAAACTGAAACATTTCCATTTCTCAAGCC  700

seq1  ATGACCAGCAATGGTGTGCCTGTTCTCCTCCCATGACCAGCAATGGTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCAGCAATGGTGTGCCTGTTCTCCTCCCATGACCAGCAATGGTGTG  750

seq1  CCTGTTCTCTTCCCATGATCATGAATATTTCAGGCTTTTTCCTCAAGCAT  800
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCTGTTCTCTTCCCATGATCATGAATATTTCA-GCTTTTTCCTCAAGCAT  799

seq1  AATTGCAGTTTACCTAGCATATACATCCACTGTCTCATAATGTGACCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCAGTTTACCTAGCATATACATCCACTGTCTCATAATGTGACCCTG  849

seq1  CTTTCCAAAGGTTTGTTTGTGTTGAAAACTCCCCCTATGAGTATTTCAGC  900
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTTTCCAAAGGTTTG-TTGTGTTGAAAACTCCCCCTATGAGTATTTCAGC  898

seq1  TTTCTCAGGGGGAGATGGAAAACCAAGCTTTTAATTAGGCTTAATTGTTC  950
      ||||||| |||||||||||||||||||| |||||||||||||||||||||
seq2  TTTCTCA-GGGGAGATGGAAAACCAAGC-TTTAATTAGGCTTAATTGTTC  946

seq1  TTAATATAAGAATCTAACTAAAGAGGGCACCAATGCCCATCATTCTATTA  1000
       ||||||||| |||||||| ||||||||||||||||||||||||||||||
seq2  -TAATATAAG-ATCTAACT-AAGAGGGCACCAATGCCCATCATTCTATTA  993

seq1  GAAGCTTTTAAAGAATGTTCATCAACCACTGTAATAACACAAGTTCAATG  1050
      |||||||||||   ||||||||| |||||||||||||||| |  ||||||
seq2  GAAGCTTTTAA--GATGTTCATC-ACCACTGTAATAACACCAAGTCAATG  1040

seq1  TTT-CTCTTT-GGAATATGTACAAATGTAAAAACAATGTAAAAAGATTAT  1098
      ||| |||||| ||||||||||||||||| |||||||||||||| ||| ||
seq2  TTTCCTCTTTGGGAATATGTACAAATGT-AAAACAATGTAAAAGGATAAT  1089

seq1  TTCATTTTGTTTGTTCTTAC-TATTAT-ACACCT-GAAAGATAATGGAAA  1145
      |||| |||| |||||||||| |||||| |||||| |||||||||||||||
seq2  TTCA-TTTGGTTGTTCTTACATATTATAACACCTGGAAAGATAATGGAAA  1138

seq1  CAAACATT  1153
      ||||||||
seq2  CAAACATT  1146