BAC Information

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BAC

Clone NameB6Ng01-144C21
Chromosome1 (Build37)
Map Location 39,988,517 - 40,175,246
singlet/doubletdoublet
Overlap geneMap4k4, Il1r2
Upstream geneNms, Pdcl3, Npas2, LOC100041999, Rpl31, Tbc1d8, D1Bwg0212e, Rnf149, EG329126, Creg2, 4933400N17Rik, LOC100042065
Downstream geneIl1r1, Il1rl2, Il1rl1, Il18r1, Il18rap, Slc9a4, Slc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144C21.bB6Ng01-144C21.g
ACCDH941924DH941925
length8361,097
definitionDH941924|Mus musculus domesticus DNA, BAC clone: B6Ng01-144C21, 5' end.DH941925|Mus musculus domesticus DNA, BAC clone: B6Ng01-144C21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,174,411 - 40,175,246)(39,988,517 - 39,989,618)
sequence
gaattctgagtagctgctaaatattgagaacgagaattaagttgaatgta
ctaaaggtgccagccaactctgtggacccccttcctacagttaataacta
ttaccaaattattttccccgtaacatttaggtttttgtgggtctaacttt
caggaaataaagtatcattgctctcaaagaatggcaatactgccaaacaa
tacttgaagacaaaggtcccttcggtggtcatgtcaggcccctacatagt
gtggttcgtgggcctcactcaggcactgtgcacccaaaagcataatgtgg
tcagctggcacaggtcccaaaccctctgatggtttcaggcaccaccatgg
gttcgtgggccacacaattcttgtagatccttacccaatgatgctggtat
tgtctccaggggagaaatgatcacagggatgggttccgtggttgttcctg
agaagatagaacggaaaagagattgcatgaggaggtcgccttggtttcca
gtacagattcagatttgcttatttagctaattaagtggccctgcccccat
gggagcagacattgtgagattccgcctctgtctggcaaaggaaatgggcc
tctccatgaaactgagcatcttaagccaatgcttttcccggcagaggcat
tcccggacgaggccatggttacacattcttctggcagatggtcttcgtta
tctgctctgcgttgaacaattagctattcctctcccgggcttcctgaatg
cacacttatggtctccacagcatgttttgccctccctcaagattaaagag
ccatgtcttcaagagcaggcgggggggggggggggg
gaattcagcctagcctggtgtaacccattctattcttaattccagccacc
ctaagaagttctgttagcctatcttttcccgattctcctaccgacgtgac
taaccccctagcaccgtgctcactccttaatgcctgttctgctttcacag
tgctctgcacgtcttactgtcagtgacagtcctttgagatgcagagttag
tgcccatgacacagtaggttgggcacctgccggacactacatccacattt
gtgggaaaggtgtgattaagattaagagcccggcagcattaggcttcgca
gctcctttcttcgtgctcaccctgctcacccttcttcatcttcctttctc
cgttgcgggctcgttttcattctctccactgtgttatcctgagctgtcca
cacacaggaaaggaaggaggttgggcaatttggggtgctggtcatggaag
ttagtcattctgacgagtccgtgaggcacaggtgataaagctgctcataa
acgctaatctgagattatttctcacccagaagagctgccatctggtagct
gtagaggcagaggctcttgtgctgttgcttgttatatagtaatccatggg
ccttacctggctgaggagcttgctgttttcttcttgactttgagattaaa
tcccatgggtcacgtggttccaaggaatgtagcagtgtacatccttgctt
caagtgactagtgaggtcttgccaaggcgaggtgtttttctttctgtccc
ctccgccttcgctgttactaattgttgtctcatttgatgatcacagtaag
attgggaaacactaagtagttagttacgtttggataagagacagctctga
gtaatctgtggcgggcctgcccagtgcctcgttgagcatggtgatgaatg
cacacaggagaaatcctgtgcgctctttcccagcatgccctctctttgaa
caactcaagacagggtctgtgtttggaacagtgactcaagatgaaagaaa
gtttgcaagtaaaaccggttgtcaattctgcctgctgttagcattcaggg
cctacaggaatgctttcctcctccccctctcttcctgagccctcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_40174411_40175246
seq2: B6Ng01-144C21.b_44_879 (reverse)

seq1  CCCCCCCCCCCCCCCCGCCTGCTCTTGAAGACATGGCTCTTTAATCTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCCCCCGCCTGCTCTTGAAGACATGGCTCTTTAATCTTGA  50

seq1  GGGAGGGCAAAACATGCTGTGGAGACCATAAGTGTGCATTCAGGAAGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGCAAAACATGCTGTGGAGACCATAAGTGTGCATTCAGGAAGCCC  100

seq1  GGGAGAGGAATAGCTAATTGTTCAACGCAGAGCAGATAACGAAGACCATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAGGAATAGCTAATTGTTCAACGCAGAGCAGATAACGAAGACCATC  150

seq1  TGCCAGAAGAATGTGTAACCATGGCCTCGTCCGGGAATGCCTCTGCCGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGAAGAATGTGTAACCATGGCCTCGTCCGGGAATGCCTCTGCCGGG  200

seq1  AAAAGCATTGGCTTAAGATGCTCAGTTTCATGGAGAGGCCCATTTCCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCATTGGCTTAAGATGCTCAGTTTCATGGAGAGGCCCATTTCCTTT  250

seq1  GCCAGACAGAGGCGGAATCTCACAATGTCTGCTCCCATGGGGGCAGGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGACAGAGGCGGAATCTCACAATGTCTGCTCCCATGGGGGCAGGGCC  300

seq1  ACTTAATTAGCTAAATAAGCAAATCTGAATCTGTACTGGAAACCAAGGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATTAGCTAAATAAGCAAATCTGAATCTGTACTGGAAACCAAGGCG  350

seq1  ACCTCCTCATGCAATCTCTTTTCCGTTCTATCTTCTCAGGAACAACCACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCTCATGCAATCTCTTTTCCGTTCTATCTTCTCAGGAACAACCACG  400

seq1  GAACCCATCCCTGTGATCATTTCTCCCCTGGAGACAATACCAGCATCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCATCCCTGTGATCATTTCTCCCCTGGAGACAATACCAGCATCATT  450

seq1  GGGTAAGGATCTACAAGAATTGTGTGGCCCACGAACCCATGGTGGTGCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAGGATCTACAAGAATTGTGTGGCCCACGAACCCATGGTGGTGCCT  500

seq1  GAAACCATCAGAGGGTTTGGGACCTGTGCCAGCTGACCACATTATGCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCATCAGAGGGTTTGGGACCTGTGCCAGCTGACCACATTATGCTTT  550

seq1  TGGGTGCACAGTGCCTGAGTGAGGCCCACGAACCACACTATGTAGGGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGCACAGTGCCTGAGTGAGGCCCACGAACCACACTATGTAGGGGCC  600

seq1  TGACATGACCACCGAAGGGACCTTTGTCTTCAAGTATTGTTTGGCAGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGACCACCGAAGGGACCTTTGTCTTCAAGTATTGTTTGGCAGTAT  650

seq1  TGCCATTCTTTGAGAGCAATGATACTTTATTTCCTGAAAGTTAGACCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTCTTTGAGAGCAATGATACTTTATTTCCTGAAAGTTAGACCCAC  700

seq1  AAAAACCTAAATGTTACGGGGAAAATAATTTGGTAATAGTTATTAACTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACCTAAATGTTACGGGGAAAATAATTTGGTAATAGTTATTAACTGT  750

seq1  AGGAAGGGGGTCCACAGAGTTGGCTGGCACCTTTAGTACATTCAACTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGGGGTCCACAGAGTTGGCTGGCACCTTTAGTACATTCAACTTAA  800

seq1  TTCTCGTTCTCAATATTTAGCAGCTACTCAGAATTC  836
      ||||||||||||||||||||||||||||||||||||
seq2  TTCTCGTTCTCAATATTTAGCAGCTACTCAGAATTC  836

seq1: chr1_39988517_39989618
seq2: B6Ng01-144C21.g_69_1165

seq1  GAATTCAGCCTAGCCTGGTGTAACCCATTCTATTCTTAATTCCAGCCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCCTAGCCTGGTGTAACCCATTCTATTCTTAATTCCAGCCACC  50

seq1  CTAAGAAGTTCTGTTAGCCTATCTTTTCCCGATTCTCCTACCGACGTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAGTTCTGTTAGCCTATCTTTTCCCGATTCTCCTACCGACGTGAC  100

seq1  TAACCCCCTAGCACCGTGCTCACTCCTTAATGCCTGTTCTGCTTTCACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCCCTAGCACCGTGCTCACTCCTTAATGCCTGTTCTGCTTTCACAG  150

seq1  TGCTCTGCACGTCTTACTGTCAGTGACAGTCCTTTGAGATGCAGAGTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGCACGTCTTACTGTCAGTGACAGTCCTTTGAGATGCAGAGTTAG  200

seq1  TGCCCATGACACAGTAGGTTGGGCACCTGCCGGACACTACATCCACATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATGACACAGTAGGTTGGGCACCTGCCGGACACTACATCCACATTT  250

seq1  GTGGGAAAGGTGTGATTAAGATTAAGAGCCCGGCAGCATTAGGCTTCGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAAGGTGTGATTAAGATTAAGAGCCCGGCAGCATTAGGCTTCGCA  300

seq1  GCTCCTTTCTTCGTGCTCACCCTGCTCACCCTTCTTCATCTTCCTTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTTCTTCGTGCTCACCCTGCTCACCCTTCTTCATCTTCCTTTCTC  350

seq1  CGTTGCGGGCTCGTTTTCATTCTCTCCACTGTGTTATCCTGAGCTGTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGCGGGCTCGTTTTCATTCTCTCCACTGTGTTATCCTGAGCTGTCCA  400

seq1  CACACAGGAAAGGAAGGAGGTTGGGCAATTTGGGGTGCTGGTCATGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGGAAAGGAAGGAGGTTGGGCAATTTGGGGTGCTGGTCATGGAAG  450

seq1  TTAGTCATTCTGACGAGTCCGTGAGGCACAGGTGATAAAGCTGCTCATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCATTCTGACGAGTCCGTGAGGCACAGGTGATAAAGCTGCTCATAA  500

seq1  ACGCTAATCTGAGATTATTTCTCACCCAGAAGAGCTGCCATCTGGTAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCTAATCTGAGATTATTTCTCACCCAGAAGAGCTGCCATCTGGTAGCT  550

seq1  GTAGAGGCAGAGGCTCTTGTGCTGTTGCTTGTTATATAGTAATCCATGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGCAGAGGCTCTTGTGCTGTTGCTTGTTATATAGTAATCCATGGG  600

seq1  CCTTACCTGGCTGAGGAGCTTGCTGTTTTCTTCTTGACTTTGAGATTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACCTGGCTGAGGAGCTTGCTGTTTTCTTCTTGACTTTGAGATTAAA  650

seq1  TCCCATGGGTCACGTGGTTCCAAGGAATGTAGCAGTGTACATCCTTGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGGGTCACGTGGTTCCAAGGAATGTAGCAGTGTACATCCTTGCTT  700

seq1  CAAGTGACTAGTGAGGTCTTGCCAAGGCGAGGTGTTTTTCTTTCTGTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGACTAGTGAGGTCTTGCCAAGGCGAGGTGTTTTTCTTTCTGTCCC  750

seq1  CTCCGCCTTCGCTGTTACTAATTGTTGTCTCATTTGATGATCACAGTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGCCTTCGCTGTTACTAATTGTTGTCTCATTTGATGATCACAGTAAG  800

seq1  ATTGGGAAACACTAAGTAGTTAGTTACGTTTGGATAAGAGACAGCTCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATTGGGAAACACTAAGTAGTTAGTTACGTTTGGATAAGAGACAGCTCTG-  849

seq1  AGTAATCTGTGGCGGGCCTGCCCAGTGCCTCGTTGAGCATGGTGATGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATCTGTGGCGGGCCTGCCCAGTGCCTCGTTGAGCATGGTGATGAAT  899

seq1  GCACACAGGAGAAATCCTGTGCGCTCTTTCCCAGCATGCCCCTCCTTTGA  950
      |||||||||||||||||||||||||||||||||||||||||   ||||||
seq2  GCACACAGGAGAAATCCTGTGCGCTCTTTCCCAGCATGCCCTCTCTTTGA  949

seq1  ACCACTCAAGACAGGGTCTGTGTTTGGAACAGGTGACTC-AGATGAAAGA  999
      || |||||||||||||||||||||||||||| ||||||| ||||||||||
seq2  ACAACTCAAGACAGGGTCTGTGTTTGGAACA-GTGACTCAAGATGAAAGA  998

seq1  AAGTTTGCAAAGTAAAA-CGGTTGTCATTTCTGCCTGCTTGTTAGCATTC  1048
      |||||||| |||||||| ||||||||| |||||||||| |||||||||||
seq2  AAGTTTGC-AAGTAAAACCGGTTGTCAATTCTGCCTGC-TGTTAGCATTC  1046

seq1  AGGGCCTACAGGAATGCCTTTCCCCTCTGCCCCCTCTCTTCCTGAGCCCT  1098
      ||||||||||||||||| ||   ||||  |||||||||||||||||||||
seq2  AGGGCCTACAGGAATGCTTT---CCTCCTCCCCCTCTCTTCCTGAGCCCT  1093

seq1  CATG  1102
      ||||
seq2  CATG  1097