BAC Information

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BAC

Clone NameB6Ng01-144E02
Chromosome1 (Build37)
Map Location 74,203,460 - 74,351,547
singlet/doubletdoublet
Overlap geneIl8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik
Upstream genePinc, LOC672208, LOC100043291, Tns1, Rufy4
Downstream geneGm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144E02.bB6Ng01-144E02.g
ACCDH941981DH941982
length799995
definitionDH941981|Mus musculus domesticus DNA, BAC clone: B6Ng01-144E02, 5' end.DH941982|Mus musculus domesticus DNA, BAC clone: B6Ng01-144E02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,203,460 - 74,204,257)(74,350,537 - 74,351,547)
sequence
gaattccacaatctagctacctgccgaattcaagtgcacaagttagggga
gcaagcttttatccaaccagccactttcctaacttcattgttttggtttt
caaatgtgttgttgttgttattgttgttgttttattgttattgctgctga
tgatggtgatggtgatgttttgaatgaggtctcatataggtcaagataga
cttgaactgctttgtagctaaagatgactttaaagtcctgatcttccttc
ctctacccccagtatactgagtgcggggattgcctgcagatgccatcata
cctcgtttattcagttctgggagccctacctaggactttgagaatctcag
gcaagcattctatcacctgagctccacctctgcccatttttgtcattttc
tttacaattatttttaactttttatgtacatgggtgtttcacctgcaagt
atgtaggtttaccctgtgcatgcctggtacctgagggggacagaagatcc
cttggaactggggttcctgggagttgttagctgctgggtgtgtgttgaga
aaccaagcctgagtacactacaagtgcagccaatgctcataaccactaag
tcatctctccagccccattttttttgttattattattattattgttttaa
tatttgtatttgtttgtaagattgtacaccttttttaatgttttactagc
atattttagctatgcatatgagtttaattataaaaatttcatatatatgt
atatatacatatttacatatgtgtatgtatacatgcatatttatatgtg
gaattcttagtcaccacagacttttttgtgacttaaatttttcttttctt
tttttttctttcttttttttgtgacttaaatttttttttcacgaaataag
aagttttaagaatgaattgatataaacatagcatagccatgtgatacaat
attgtgcatcattgaaactattcttttgttgtttggttttcctggcatgg
ggatgaaacccagctgggtctctcacatggaaagccagagatctaccact
gacctacgcccctagaccgaaagtgctgaagatcagttagtgacaaaaaa
gaaaaagagggaaaaaaaatcagtgaaatctgactatgtgaaaccagggt
cagtaattgcaacacttgggctgaggccgggtgacaagtgctggagacca
gcctgaggtacatagcgacatcgctcttttacccagaatacaaacaaaca
aaaaaacaaacccaataacaacttttaagacaacaggattagctctaaag
cccctagcgcaaatcgctgatatgtaggcactgatgacgcataaatagca
cttcttactggggtggagtctggaattcatggaaagaagttatttttttc
ccagtgagtttgggttttcgctgcgaaccggcgttgcttccagtaaatgt
gaaccactcacacctgggtcgtggttgaggtctggaggggaccccagcgc
tccctggaggtctcggggtgccgggcggctcctccccactggcggcggag
agagacggggcggggcacggagccccagtccagcccggcccagcccagtc
ctcgccagcgcccggaggcccaggcggatctcacggtccggaacagcgca
gcaagtgaggggctgcgccgttggagtgggacccgagaccgcgggaatga
agtgacctgggcgcgctgcgcccagcgccgaacttttctggcacgcgcgg
ccgactcggtcgtgctccggagcaggctaaggtcctttcgtctgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_74203460_74204257
seq2: B6Ng01-144E02.b_44_842

seq1  GAATTCCACAATCTAGCTACCTGCCGAATTCAAGTGCACAAGTTAGGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAATCTAGCTACCTGCCGAATTCAAGTGCACAAGTTAGGGGA  50

seq1  GCAAGCTTTTATCCAACCAGCCACTTTCCTAACTTCATTGTTTTGGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCTTTTATCCAACCAGCCACTTTCCTAACTTCATTGTTTTGGTTTT  100

seq1  CAAATGTGTTGTTGTTGTTATTGTTGTTGTTTTATTGTTATTGCTGCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTGTTGTTGTTGTTATTGTTGTTGTTTTATTGTTATTGCTGCTGA  150

seq1  TGATGGTGATGGTGATGTTTTGAATGAGGTCTCATATAGGTCAAGATAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGTGATGGTGATGTTTTGAATGAGGTCTCATATAGGTCAAGATAGA  200

seq1  CTTGAACTGCTTTGTAGCTAAAGATGACTTTAAAGTCCTGATCTTCCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAACTGCTTTGTAGCTAAAGATGACTTTAAAGTCCTGATCTTCCTTC  250

seq1  CTCTACCCCCAGTATACTGAGTGCGGGGATTGCCTGCAGATGCCATCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACCCCCAGTATACTGAGTGCGGGGATTGCCTGCAGATGCCATCATA  300

seq1  CCTCGTTTATTCAGTTCTGGGAGCCCTACCTAGGACTTTGAGAATCTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGTTTATTCAGTTCTGGGAGCCCTACCTAGGACTTTGAGAATCTCAG  350

seq1  GCAAGCATTCTATCACCTGAGCTCCACCTCTGCCCATTTTTGTCATTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCATTCTATCACCTGAGCTCCACCTCTGCCCATTTTTGTCATTTTC  400

seq1  TTTACAATTATTTTTAACTTTTTATGTACATGGGTGTTTCACCTGCAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAATTATTTTTAACTTTTTATGTACATGGGTGTTTCACCTGCAAGT  450

seq1  ATGTAGGTTTACCCTGTGCATGCCTGGTACCTGAGGGGGACAGAAGATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGGTTTACCCTGTGCATGCCTGGTACCTGAGGGGGACAGAAGATCC  500

seq1  CTTGGAACTGGGGTTCCTGGGAGTTGTTAGCTGCTGGGTGTGTGTTGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAACTGGGGTTCCTGGGAGTTGTTAGCTGCTGGGTGTGTGTTGAGA  550

seq1  AACCAAGCCTGAGTACACTACAAGTGCAGCCAATGCTCATAACCACTAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGCCTGAGTACACTACAAGTGCAGCCAATGCTCATAACCACTAAG  600

seq1  TCATCTCTCCAGCCCCATTTTTTTTGTTATTATTATTATTATTGTTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCTCCAGCCCCATTTTTTTTGTTATTATTATTATTATTGTTTTAA  650

seq1  TATTTGTATTTGTTTGTAAGATTGTACACC-TTTTTAATGTTTTACTAGC  699
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TATTTGTATTTGTTTGTAAGATTGTACACCTTTTTTAATGTTTTACTAGC  700

seq1  ATATTTTAGCTATGCATATGAGTTTAATTATAAAAATTTCATATATATGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTAGCTATGCATATGAGTTTAATTATAAAAATTTCATATATATGT  750

seq1  ATATATACATATTTACATATGTGTATGTATACATGCATATTTATATGTG  798
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATACATATTTACATATGTGTATGTATACATGCATATTTATATGTG  799

seq1: chr1_74350537_74351547
seq2: B6Ng01-144E02.g_67_1061 (reverse)

seq1  GCAGAACGAAAGGACCCTAGCCTGGCTCCGGAGCACGACCGGAGTCGGCC  50
      |||| ||||||||||| |||||| |||||||||||||||| ||||||| |
seq2  GCAG-ACGAAAGGACCTTAGCCT-GCTCCGGAGCACGACC-GAGTCGG-C  46

seq1  CGCGCGTGCCAGAAAAGTTCGGGCGCCTGGGCGCAGCGCCGCCCCAGGCC  100
      |||||||||||||||||||| |||| |||||||||||||   |||||| |
seq2  CGCGCGTGCCAGAAAAGTTC-GGCG-CTGGGCGCAGCGC--GCCCAGGTC  92

seq1  ACTTCCATTCCCCGCCGGTCTCGGGTCCCCACCTCCAACGGCCGCAGCCC  150
      |||| |||||||   ||||||||||||||   ||||||||| ||||| ||
seq2  ACTT-CATTCCC--GCGGTCTCGGGTCCC--ACTCCAACGG-CGCAG-CC  135

seq1  CCTCACTTGCCTGCGCTGTTCCGGACCGTGAGATCCGCCTGGGCCTCCGG  200
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTTG-CTGCGCTGTTCCGGACCGTGAGATCCGCCTGGGCCTCCGG  184

seq1  GCGCTGGCGAGGACTGGGCTGGGCCGGGCTGGACTGGGGCTCCGTGCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTGGCGAGGACTGGGCTGGGCCGGGCTGGACTGGGGCTCCGTGCCCC  234

seq1  GCCCCGTCTCTCTCCGCCGCCAGTGGGGAGGAGCCGCCCGGCACCCCGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCGTCTCTCTCCGCCGCCAGTGGGGAGGAGCCGCCCGGCACCCCGAG  284

seq1  ACCTCCAGGGAGCGCTGGGGTCCCCTCCAGACCTCAACCACGACCCAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCCAGGGAGCGCTGGGGTCCCCTCCAGACCTCAACCACGACCCAGGT  334

seq1  GTGAGTGGTTCACATTTACTGGAAGCAACGCCGGTTCGCAGCGAAAACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGGTTCACATTTACTGGAAGCAACGCCGGTTCGCAGCGAAAACCC  384

seq1  AAACTCACTGGGAAAAAAATAACTTCTTTCCATGAATTCCAGACTCCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCACTGGGAAAAAAATAACTTCTTTCCATGAATTCCAGACTCCACC  434

seq1  CCAGTAAGAAGTGCTATTTATGCGTCATCAGTGCCTACATATCAGCGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAAGAAGTGCTATTTATGCGTCATCAGTGCCTACATATCAGCGATT  484

seq1  TGCGCTAGGGGCTTTAGAGCTAATCCTGTTGTCTTAAAAGTTGTTATTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCTAGGGGCTTTAGAGCTAATCCTGTTGTCTTAAAAGTTGTTATTGG  534

seq1  GTTTGTTTTTTTGTTTGTTTGTATTCTGGGTAAAAGAGCGATGTCGCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTTTTGTTTGTTTGTATTCTGGGTAAAAGAGCGATGTCGCTAT  584

seq1  GTACCTCAGGCTGGTCTCCAGCACTTGTCACCCGGCCTCAGCCCAAGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTCAGGCTGGTCTCCAGCACTTGTCACCCGGCCTCAGCCCAAGTGT  634

seq1  TGCAATTACTGACCCTGGTTTCACATAGTCAGATTTCACTGATTTTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTACTGACCCTGGTTTCACATAGTCAGATTTCACTGATTTTTTTT  684

seq1  CCCTCTTTTTCTTTTTTGTCACTAACTGATCTTCAGCACTTTCGGTCTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTTTTCTTTTTTGTCACTAACTGATCTTCAGCACTTTCGGTCTAG  734

seq1  GGGCGTAGGTCAGTGGTAGATCTCTGGCTTTCCATGTGAGAGACCCAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGTAGGTCAGTGGTAGATCTCTGGCTTTCCATGTGAGAGACCCAGCT  784

seq1  GGGTTTCATCCCCATGCCAGGAAAACCAAACAACAAAAGAATAGTTTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCATCCCCATGCCAGGAAAACCAAACAACAAAAGAATAGTTTCAA  834

seq1  TGATGCACAATATTGTATCACATGGCTATGCTATGTTTATATCAATTCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCACAATATTGTATCACATGGCTATGCTATGTTTATATCAATTCAT  884

seq1  TCTTAAAACTTCTTATTTCGTGAAAAAAAAATTTAAGTCACAAAAAAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAACTTCTTATTTCGTGAAAAAAAAATTTAAGTCACAAAAAAAAG  934

seq1  AAAGAAAAAAAAAGAAAAGAAAAATTTAAGTCACAAAAAAGTCTGTGGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAAAAAGAAAAGAAAAATTTAAGTCACAAAAAAGTCTGTGGTG  984

seq1  ACTAAGAATTC  1011
      |||||||||||
seq2  ACTAAGAATTC  995