BAC Information

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BAC

Clone NameB6Ng01-144E06
Chromosome1 (Build37)17 (Build37)
Map Location 109,610,187 - 109,611,31517,836,151 - 17,836,213
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneBcl2, LOC100042085, Fvt1, Vps4b, Serpinb5, LOC671141, Serpinb12, Serpinb13, LOC666394, Serpinb3a, Serpinb3d, LOC100041276, Serpinb3b, EG666401, Serpinb3c, LOC666414, Serpinb11, Serpinb7, Serpinb2, Serpinb10, Serpinb8
Downstream geneLOC435640
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144E06.bB6Ng01-144E06.g
ACCDH941989DH941990
length1,1071,012
definitionDH941989|Mus musculus domesticus DNA, BAC clone: B6Ng01-144E06, 5' end.DH941990|Mus musculus domesticus DNA, BAC clone: B6Ng01-144E06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(109,610,187 - 109,611,315)(17,836,151 - 17,836,213)
sequence
gaattctcccaattgtttttatagtctgccttctgggctatagtagacaa
ccactgtttttatggtaatagaattcactttggttgctagtttattataa
aaaacctgtgaacactatcttgtttgtacagagcttacgcacagtacaac
actagctttaaactccaaatgcagttataggaaaaaaaaaaaaaaacctt
aactaacgtttaaacgtttatatgtattgcattatctttcatggagagtt
ctgattaatgaactcaagacctgtgcctttattaaaaaacatgttataaa
tcattgatgtttcagtacataattgtctgaattgcttgcttactatttgc
tgactctactccctacaaagatgagtcagtcacccaggcaaatatctccc
tcagcgtttgtgtttgttgtccacatttgaaagggtcaagagtgcagaaa
tttaagaatggttaaagtgatatgcaacattctcttaattaaaagtaaag
gaacatttaatattttattaaatcaaaaccacaaaatggaatttttaagc
tcccataaagatttttttctatgactgtgtagtttccattagtaatgaat
atttggacttgaactaatattacaattcaaataatagtatttaatttttc
attgttttgcaatctaaaagctccctcttctgataatgtggagaaagtct
tcacaaagttccctcctgtgggcttctgtctagatctgcttgcatttcca
gaacacatgttctttattaaaggctgttgtgaaccctaacaagtatatac
attaaagtgcatatcatataaagacccagtttatgctcagtccctgactg
gaacagcaactgcaaattgtacaccaggttttcttaaagtcatgagtata
tttctgagaaaattaacattcattaccctgttatgggattccagtatcct
ttttactgcaacactatatgaagatcacaacattaggacagatattcagg
atgtcataggacttttgttgataattcatagcagcttctttctcagcata
atattacctactaagtctgataattgattcaatgtataacttaataatat
caggaat
gaattctccctttagatttgtatccaactcttacttgaattatttacttt
tgatatcaaatttttgagtttttatgtatttttgatattaaatctctacc
acatatggaggtggcatttttcccagtatgcagtctgactctttatctgt
ttgacagtattctttgccgtacaagagcttcccagtttcataaagtcaca
tttattaagtccatcttagtgcctgcattagtgctattttatttaggaag
gtatctcctgtgatactgcatttgaggctgcttcccacctcctcttttat
cagcttccgtatttctgatgcatgttgaggtctttgatctacttggacat
gagttttgtgcagggtgataaatatgaatatgttttcattcttctacaga
catccagttacaccagaatcatttgttgaagatgctctcaattttccatt
gtctactttcggattctttatgaaaagtcaggtgtctataagtgtgtgga
tttatgtctatgttttcattcaattcccttgatcaatgtgcctgttttta
tgtcagttctatgctgttgttattactatagctctgtattacaacttgaa
atcagggctcatgatacctccagcagttcttttattgttcggtattgttt
tagatatcctggcctttttattttcccacatagaagtaagaattgtcctt
tcaagatctaaaagacttatgtacaaattctgatggatactgatttcagg
agaataactactgttactatgtgaaccctactgtttcctgaagccgggag
atttttccatcttctgatatctttttcaatctctttggagacttgaagtt
tttatcattcaagtctttcacttgctgattagaattaccctaaggtattt
ttctctggtttttttctctcagtatgtttgtcatttgtgtataggaatgt
gccttttggtttgtttgttttggatggctttaatttggtttttgttttgt
ttgttttgttag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_109610187_109611315
seq2: B6Ng01-144E06.b_44_1150 (reverse)

seq1  ATTCATGATATTATTTAAGATTATACATATGTGAAAACCATATTATCAAA  50
      |||| |||||||| ||||| ||||||||   ||  || || ||||||  |
seq2  ATTCCTGATATTA-TTAAG-TTATACAT---TG--AATCA-ATTATC--A  40

seq1  GACTTTAGTAGGTAAATTATTATGCTGAGAAAGAAGCTGCTATGAATTTA  100
      ||| |||||||||||  ||||||||||||||||||||||||||||| |||
seq2  GAC-TTAGTAGGTAA--TATTATGCTGAGAAAGAAGCTGCTATGAA-TTA  86

seq1  TCAAACAAAAGGTTCTTATGACATCCTGAATATCTGTCCTAATGTTGGTG  150
      || ||||||||  || |||||||||||||||||||||||||||||| |||
seq2  TC-AACAAAAG--TCCTATGACATCCTGAATATCTGTCCTAATGTT-GTG  132

seq1  ATTCTTCATATAGTGTTTGCAGTAAAAAGGATACTGGAATCCCATAACAG  200
      | ||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  A-TCTTCATATAGTG-TTGCAGTAAAAAGGATACTGGAATCCCATAACAG  180

seq1  GGTAATGAATGTTAATTTTCTCAGAAATATTACTCATGACTTTTAAGAAA  250
      ||||||||||||||||||||||||||||| |||||||||| |||||||||
seq2  GGTAATGAATGTTAATTTTCTCAGAAATA-TACTCATGAC-TTTAAGAAA  228

seq1  ACCTGGTGTACAATTTGCAGTTGCTGTTCCAGTCAGGGACTGAGCATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGTGTACAATTTGCAGTTGCTGTTCCAGTCAGGGACTGAGCATAAA  278

seq1  CTGGGTCTTTATATGATATGCACTTTAATGTATATACTTGTTAGGGTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCTTTATATGATATGCACTTTAATGTATATACTTGTTAGGGTTCA  328

seq1  CAACAGCCTTTAATAAAGAACATGTGTTCTGGAAATGCAAGCAGATCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCCTTTAATAAAGAACATGTGTTCTGGAAATGCAAGCAGATCTAG  378

seq1  ACAGAAGCCCACAGGAGGGAACTTTGTGAAGACTTTCTCCACATTATCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGCCCACAGGAGGGAACTTTGTGAAGACTTTCTCCACATTATCAG  428

seq1  AAGAGGGAGCTTTTAGATTGCAAAACAATGAAAAATTAAATACTATTATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGAGCTTTTAGATTGCAAAACAATGAAAAATTAAATACTATTATT  478

seq1  TGAATTGTAATATTAGTTCAAGTCCAAATATTCATTACTAATGGAAACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGTAATATTAGTTCAAGTCCAAATATTCATTACTAATGGAAACTA  528

seq1  CACAGTCATAGAAAAAAATCTTTATGGGAGCTTAAAAATTCCATTTTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTCATAGAAAAAAATCTTTATGGGAGCTTAAAAATTCCATTTTGTG  578

seq1  GTTTTGATTTAATAAAATATTAAATGTTCCTTTACTTTTAATTAAGAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGATTTAATAAAATATTAAATGTTCCTTTACTTTTAATTAAGAGAA  628

seq1  TGTTGCATATCACTTTAACCATTCTTAAATTTCTGCACTCTTGACCCTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCATATCACTTTAACCATTCTTAAATTTCTGCACTCTTGACCCTTT  678

seq1  CAAATGTGGACAACAAACACAAACGCTGAGGGAGATATTTGCCTGGGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTGGACAACAAACACAAACGCTGAGGGAGATATTTGCCTGGGTGA  728

seq1  CTGACTCATCTTTGTAGGGAGTAGAGTCAGCAAATAGTAAGCAAGCAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCATCTTTGTAGGGAGTAGAGTCAGCAAATAGTAAGCAAGCAATT  778

seq1  CAGACAATTATGTACTGAAACATCAATGATTTATAACATGTTTTTTAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAATTATGTACTGAAACATCAATGATTTATAACATGTTTTTTAATA  828

seq1  AAGGCACAGGTCTTGAGTTCATTAATCAGAACTCTCCATGAAAGATAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACAGGTCTTGAGTTCATTAATCAGAACTCTCCATGAAAGATAATG  878

seq1  CAATACATATAAACGTTTAAACGTTAGTTAAGGTTTTTTTTTTTTTTTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACATATAAACGTTTAAACGTTAGTTAAGGTTTTTTTTTTTTTTTCC  928

seq1  TATAACTGCATTTGGAGTTTAAAGCTAGTGTTGTACTGTGCGTAAGCTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACTGCATTTGGAGTTTAAAGCTAGTGTTGTACTGTGCGTAAGCTCT  978

seq1  GTACAAACAAGATAGTGTTCACAGGTTTTTTATAATAAACTAGCAACCAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAACAAGATAGTGTTCACAGGTTTTTTATAATAAACTAGCAACCAA  1028

seq1  AGTGAATTCTATTACCATAAAAACAGTGGTTGTCTACTATAGCCCAGAAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATTCTATTACCATAAAAACAGTGGTTGTCTACTATAGCCCAGAAG  1078

seq1  GCAGACTATAAAAACAATTGGGAGAATTC  1129
      |||||||||||||||||||||||||||||
seq2  GCAGACTATAAAAACAATTGGGAGAATTC  1107

seq1: chr17_17836151_17836213
seq2: B6Ng01-144E06.g_1022_1080 (reverse)

seq1  CTAACAAAATATATTTAAAAAGACAAAAA-AAAAAAAAACCAAAAGAAAA  49
      ||||||||| |     || || |||||||  |||  ||| | |   ||||
seq2  CTAACAAAACA-----AACAAAACAAAAACCAAATTAAAGCCATCCAAAA  45

seq1  CAAACAAACCAAAA  63
      ||||||||||||||
seq2  CAAACAAACCAAAA  59