BAC Information

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BAC

Clone NameB6Ng01-144E18
Chromosome12 (Build37)1 (Build37)
Map Location 8,707,036 - 8,707,50295,670,126 - 95,671,089
singlet/doubletsingletsinglet
Overlap genePum2
Upstream geneEG668388, Apob, 1110057K04Rik, Gdf7, Hs1bp3, BC106175, Rhob, Slc7a15, LOC100043154
Downstream geneF730043H23, Sdc1, Laptm4a, Matn3, Wdr35, Ttc32, LOC633030, LOC100042238, Osr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-144E18.bB6Ng01-144E18.g
ACCDH942013DH942014
length981963
definitionDH942013|Mus musculus domesticus DNA, BAC clone: B6Ng01-144E18, 5' end.DH942014|Mus musculus domesticus DNA, BAC clone: B6Ng01-144E18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(8,707,036 - 8,707,502)(95,670,126 - 95,671,089)
sequence
gaattctggagatggctcagctgctaagagcactgactgttcttccagtg
gtcctgagctcaattcccagcaaccacatgatggctcacaaccatctgca
atgggacctgagaccatcttctagtgtgcctgaagacagctatagtatac
tcatatacataaaacaaacaaaactctaaaaagacatagaactattataa
gaatgttttgttttaaccccaggtgtgggatgtggggcagcttcagattg
tccacagcagctgactaccatttgcctcctgtgctggcagaggcatggtt
ttgccagctgcagatagtttcagcaactgtgtgacatttggaattctggg
gacttttcagaggttatatacatgttagggccccatgagaggttgtctgt
ggtttgttaagtagtcacacataaggaagaagcttgaagaaatttagaga
tcctgacctcgaatatcaaacttgtgccaaggaattcaatgtcctgatca
gcagaaagtagtctaatgataacgtccaccaccacccctttcccctctat
ccctttttctctcctatctagtgtgaggggattgaaaaggtgcaataagg
gcagagaagaactcacaaagtaggcaaaagttgggttacagttgctatgt
agtccaggctggtttgaaaatcagagaggtctgcctacttctacctcccc
agtgctgagattaaaggtatacaccaccacactcagcaggtaatttcact
tatttatttgcttgctttgattaattattgaaatgtgatctcacttgtaa
ctgcggctagctttgaattcacaagagatcttcctgcttatgcagcctca
gtggtgggattaaaggcattgtcctgtaaaggcttcctcagagaatagaa
catgccatcttgtgggaagctccttcagctggcagataaacaactcaaat
acctttagaagtccctgaaattgagcagatt
gaattcttgtttgtgtgccaggtgttcctattggatatgtgactgatcat
tcacatattttgcccatctggagagaattgttagggcattctactcccca
gcatatgtcctcagagttgtaccttgtctgacaagttcagatttataagg
aggatcagtgcctgtggtatggagctgcctctctctgattgtgaatgttt
cttgttctgtcttccacacagggggaactggccctacttcagacacaggc
tggggttgcatgcttcggtgtggacagatgatctttgcccaggccctggt
atgccggcacttaggtcgaggtgagtcacagtgcttacatagaatctgtg
tagtaagggatggttaaagcacatcatagaagctggacatagtggcacat
gcctttaatcccaaccccagggaggtgacaaaataaaaaagcatgtcata
ggcaaaacacagatttgtgtggttcttgtctatcaggttcaaagctgtag
gctcaatcttgagtagcaacaaattgtgtgggtgtgtacacggttccttg
ccagtgaaaaccagggggtcatacttaaatgctgtggaaagtccatttga
aagttatctcactttctgtaggaagcttgcagtgctcaacacaggttttt
gtttttgtttttatttttgagacagggtttctctgtgtaaccctggctgt
cctagaattcactctgtagaccaggctggccttgaactcagaaatctgcc
tgcctctgcctcccaagtgctgggattaaaggagtgcgccaccactgccg
gcttcagcacagtttaatctttttttcttagtattttaattcaggagctt
actgagttgcccaggcagaacttgagcttgcagttttttatgtcttagtt
agggtttttattgttgtgaaaaaacaccatgaccaaaagcaacatgggga
ggaaagggcttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_8707036_8707502
seq2: B6Ng01-144E18.b_54_219 (reverse)

seq1  GTTTTGTTTGTTTTATTCCAGAATTCACCCATTGGAATAAATTAAAGCAG  50
                                                        
seq2  --------------------------------------------------  0

seq1  CCTGTACTCTCTGGCTCTTTTCTCGTTTTCTAAGATTGCTTGTTTGGGAT  100
                                                        
seq2  --------------------------------------------------  0

seq1  GTTTTTGTGATGTAAAACAATCCCTTTTTTTTTTTTTAATGGATTGCCCT  150
                                                        
seq2  --------------------------------------------------  0

seq1  GTTCTTTCCTTTTAAAGTTTTGCATATTGAGTCTTAACTGTTATAAATCT  200
                                                        
seq2  --------------------------------------------------  0

seq1  CTCTAATGTATGGAGAATCATTGTGTATACTTACAAGAATTGTTTTAAAT  250
                                                        
seq2  --------------------------------------------------  0

seq1  GTATCGTTTTTTGTGAGCTATCATCAGGAGGTCATTTTATTTTTTAAAGT  300
                                                      ||
seq2  ------------------------------------------------GT  2

seq1  CTTATTTATTTTATGTATGTGAGTACACTCACTGTCATGTCTTCAGACAC  350
       || ||| |||||||||| |||||| ||| |  |   ||||||||| |||
seq2  TTTGTTTGTTTTATGTATATGAGTATACT-ATAG--CTGTCTTCAGGCAC  49

seq1  CCCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGT  400
       | |||||| ||  |||| ||||||| ||||||||||||||||| |||||
seq2  ACTAGAAGATGGTCTCAGGTCCCATTGCAGATGGTTGTGAGCCATCATGT  99

seq1  GGTTGCTGGGAATTGAGCTCAGGACCTGTGGAAGAGCAGTCAGTGCTCTT  450
      ||||||||||||||||||||||||||  ||||||| ||||||||||||||
seq2  GGTTGCTGGGAATTGAGCTCAGGACCACTGGAAGAACAGTCAGTGCTCTT  149

seq1  AACCGCTGAGCCATCTC  467
      | | |||||||||||||
seq2  AGCAGCTGAGCCATCTC  166

seq1: chr1_95670126_95671089
seq2: B6Ng01-144E18.g_67_1029

seq1  GAATTCTTGTTTGTGTGCCAGGTGTTCCTATTGGATATGTGACTGATCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTTTGTGTGCCAGGTGTTCCTATTGGATATGTGACTGATCAT  50

seq1  TCACATATTTTGCCCATCTGGAGAGAATTGTTAGGGCATTCTACTCCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATATTTTGCCCATCTGGAGAGAATTGTTAGGGCATTCTACTCCCCA  100

seq1  GCATATGTCCTCAGAGTTGTACCTTGTCTGACAAGTTCAGATTTATAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATGTCCTCAGAGTTGTACCTTGTCTGACAAGTTCAGATTTATAAGG  150

seq1  AGGATCAGTGCCTGTGGTATGGAGCTGCCTCTCTCTGATTGTGAATGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCAGTGCCTGTGGTATGGAGCTGCCTCTCTCTGATTGTGAATGTTT  200

seq1  CTTGTTCTGTCTTCCACACAGGGGGAACTGGCCCTACTTCAGACACAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCTGTCTTCCACACAGGGGGAACTGGCCCTACTTCAGACACAGGC  250

seq1  TGGGGTTGCATGCTTCGGTGTGGACAGATGATCTTTGCCCAGGCCCTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTTGCATGCTTCGGTGTGGACAGATGATCTTTGCCCAGGCCCTGGT  300

seq1  ATGCCGGCACTTAGGTCGAGGTGAGTCACAGTGCTTACATAGAATCTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCGGCACTTAGGTCGAGGTGAGTCACAGTGCTTACATAGAATCTGTG  350

seq1  TAGTAAGGGATGGTTAAAGCACATCATAGAAGCTGGACATAGTGGCACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAGGGATGGTTAAAGCACATCATAGAAGCTGGACATAGTGGCACAT  400

seq1  GCCTTTAATCCCAACCCCAGGGAGGTGACAAAATAAAAAAGCATGTCATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAATCCCAACCCCAGGGAGGTGACAAAATAAAAAAGCATGTCATA  450

seq1  GGCAAAACACAGATTTGTGTGGTTCTTGTCTATCAGGTTCAAAGCTGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAACACAGATTTGTGTGGTTCTTGTCTATCAGGTTCAAAGCTGTAG  500

seq1  GCTCAATCTTGAGTAGCAACAAATTGTGTGGGTGTGTACACGGTTCCTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAATCTTGAGTAGCAACAAATTGTGTGGGTGTGTACACGGTTCCTTG  550

seq1  CCAGTGAAAACCAGGGGGTCATACTTAAATGCTGTGGAAAGTCCATTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGAAAACCAGGGGGTCATACTTAAATGCTGTGGAAAGTCCATTTGA  600

seq1  AAGTTATCTCACTTTCTGTAGGAAGCTTGCAGTGCTCAACACAGGTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATCTCACTTTCTGTAGGAAGCTTGCAGTGCTCAACACAGGTTTTT  650

seq1  GTTTTTGTTTTTATTTTTGAGACAGGGTTTCTCTGTGTAACCCTGGCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTTTTTATTTTTGAGACAGGGTTTCTCTGTGTAACCCTGGCTGT  700

seq1  CCTAGAATTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAATTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCTGCC  750

seq1  TGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGAGTGCGCCACCACTGCCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGAGTGCGCCACCACTGCCG  800

seq1  GCTTCAGCACAGTTTTAATC-TTTTTTCTTAGTATTTTAATTCAGGAGCT  849
      |||||||||||| ||||||| |||||||||||||||||||||||||||||
seq2  GCTTCAGCACAG-TTTAATCTTTTTTTCTTAGTATTTTAATTCAGGAGCT  849

seq1  TACTGAGTTGCCCAGGCAGAACTTGAGCTTGCAGTTCTTTTATGTCTTAG  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TACTGAGTTGCCCAGGCAGAACTTGAGCTTGCAGTT-TTTTATGTCTTAG  898

seq1  TTAGGGTTTTTATTGTTGTGATAAAACACCATGACCAAAAGCAACATGGG  949
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTAGGGTTTTTATTGTTGTGAAAAAACACCATGACCAAAAGCAACATGGG  948

seq1  GAGGAAAGGGCTTAT  964
      |||||||||||||||
seq2  GAGGAAAGGGCTTAT  963